MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-09-08 00:45:39 PST
Job id & description: 1186, tyrdc
Query type: protein
Count queries & homologs: 1, 8
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
WP_080480277.1536501CompleteK01580COG0076FirmicutesEnterococcus97.48100.099.84
WP_080480277.1525212CompleteK01580COG0076FirmicutesEnterococcus96.798.2485.04
WP_080480277.1547268CompleteK01580COG0076FirmicutesLactobacillus95.9199.0361.37
WP_080480277.1524085CompleteK01580COG0076FirmicutesEnterococcus95.4496.9660.53
WP_080480277.1546922CompleteK01580COG0076FirmicutesEnterococcus95.4498.5459.87
WP_080480277.1556459CompleteK01580COG0076unknownunknown95.4499.3555.67
WP_080480277.1528470CompleteK01580COG0076unknownunknown95.4497.651.89
WP_080480277.1479046CompleteK01580COG0076ProteobacteriaProvidencia95.696.4541.76
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382