MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-09-21 21:05:57 PST
Job id & description: 1200, cgr2
Query type: protein
Count queries & homologs: 1, 19
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1661431CompleteunknownNOG151208ActinobacteriaEggerthella100.084.92100.0
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1701371CompleteK03388COG1145ActinobacteriaEggerthella97.6382.9941.07
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1699136CompleteunknownCOG1145unknownunknown97.6382.9941.19
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1598392CompleteunknownCOG1145unknownunknown97.3483.1739.53
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE2221446CompleteunknownCOG1145unknownunknown96.1593.638.23
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1743270Lack 5'-endunknownCOG1145unknownunknown97.3482.0137.84
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1278906CompleteunknownCOG1145unknownunknown96.1582.6634.32
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1905514Lack 3'-endK03388COG1145unknownunknown92.676.4737.85
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1449799CompleteK00338COG1145unknownunknown97.6384.8333.88
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1828064CompleteunknownCOG1145ActinobacteriaEggerthella94.6783.4634.05
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1416659CompleteK00338COG1145unknownunknown97.6384.9834.13
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1736790CompleteunknownCOG1145unknownunknown96.7583.8534.6
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1738560CompleteunknownCOG1145unknownunknown92.982.3133.03
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1593361CompleteunknownCOG1145unknownunknown89.0574.0735.46
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1733434CompleteunknownCOG1145unknownunknown89.0579.2332.18
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1736789CompleteunknownCOG1145unknownunknown89.0579.2331.55
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE1804041CompleteunknownCOG1145unknownunknown91.4281.9833.33
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE2030528Lack 3'-endunknownCOG1145unknownunknown86.6980.6630.33
query_idMSLINGLLALLGEIESDAIAVHEERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPE2450418Lack 5'-endunknownNOG151208unknownunknown74.8582.2131.75
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382