MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-09-25 07:45:19 PST
Job id & description: 1210, glm
Query type: protein
Count queries & homologs: 1, 65
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
glm2412031CompleteK01599NOG132903unknownunknown100.0100.096.66
glm2384598CompleteK01599NOG132903unknownunknown100.099.479.64
glm2399199CompleteK01599NOG132903unknownunknown100.099.769.3
glm2401740CompleteK01599NOG132903unknownunknown100.099.769.0
glm1968031Lack 5'-endK01599NOG132903unknownunknown100.089.6569.6
glm2408189CompleteK01599NOG132903unknownunknown100.0100.068.39
glm2809722Lack 3'-endK01599NOG132903unknownunknown91.79100.072.52
glm2412033CompleteK01599NOG132903unknownunknown100.099.765.05
glm2412012CompleteK01599NOG132903unknownunknown100.099.765.96
glm2341564CompleteK01599NOG132903unknownunknown100.098.563.53
glm2322331CompleteK01599NOG132903unknownunknown100.098.5161.33
glm3129031Lack 3'-endK01599NOG132903unknownunknown85.4199.6570.11
glm2382993CompleteK01599NOG132903unknownunknown100.0100.054.98
glm2380785CompleteK01599NOG132903unknownunknown100.0100.055.29
glm2387288CompleteK01599NOG132903unknownunknown100.0100.054.98
glm2209483CompleteK01599NOG132903unknownunknown100.095.6556.8
glm1683632Lack 5'-endK01599NOG132903FirmicutesRuminococcus100.083.0456.23
glm2073172CompleteK01599NOG132903FirmicutesRuminococcus100.091.8855.93
glm1787136CompleteK01599NOG132903FirmicutesRuminococcus100.085.1955.93
glm3113133Lack 3'-endK01599NOG132903unknownunknown87.23100.063.41
glm2196646CompleteK01599NOG132903unknownunknown98.4893.6454.15
glm2195980CompleteK01599NOG132903unknownunknown100.095.3854.68
glm2220981CompleteunknownNOG132903Firmicutesunknown100.095.3553.5
glm2192941CompleteunknownNOG132903unknownunknown100.095.3854.38
glm2387285CompleteK01599NOG132903unknownunknown100.099.0953.8
glm2175488Lack 5'-endK01599NOG132903unknownunknown100.094.5452.42
glm3755887Lack 3'-endK01599NOG132903unknownunknown75.08100.068.02
glm2184228CompleteunknownNOG132903unknownunknown100.094.8151.52
glm1189957Lack 3'-endK00548NOG132903unknownunknown100.071.7752.12
glm2164340Lack 5'-endK01599NOG132903unknownunknown100.093.9850.15
glm2204269Lack 3'-endK01599NOG132903unknownunknown100.094.850.76
glm3291741Lack 3'-endK01599NOG132903unknownunknown82.67100.055.31
glm2373455CompleteK01599NOG132903unknownunknown99.3999.447.01
glm3128033Lack 5'-endK01599NOG132903unknownunknown79.9493.5952.09
glm3440664Lack 3'-endunknownNOG132903unknownunknown78.4297.7252.49
glm2903273Lack 3'-endK01599NOG132903unknownunknown88.4597.9743.34
glm2373284CompleteK01599NOG132903unknownunknown100.099.436.75
glm2372991CompleteK01599NOG132903unknownunknown97.5796.9938.27
glm2411720CompleteK01599NOG132903unknownunknown99.799.3938.55
glm2219970CompleteK01599NOG132903unknownunknown100.095.9340.06
glm2349040CompleteK01599NOG132903unknownunknown100.098.839.46
glm2412054CompleteK01599NOG132903unknownunknown99.799.3937.95
glm2293181CompleteK01599NOG132903unknownunknown100.097.6338.55
glm2104878Lack 3'-endK01599NOG132903unknownunknown95.1488.1738.92
glm2388639Lack 5'-endK01599NOG132903unknownunknown95.4495.7740.25
glm2323579CompleteK01599NOG132903unknownunknown100.099.437.09
glm2285864Lack 3'-endK01599NOG132903unknownunknown99.796.7637.24
glm2124202Lack 3'-endK01599NOG132903unknownunknown99.793.236.86
glm1232617CompleteK01599NOG132903unknownunknown97.5771.5637.35
glm2053601Lack 3'-endK01599NOG132903unknownunknown99.791.3937.16
glm2346277CompleteK01599NOG132903unknownunknown97.8797.937.08
glm2050792CompleteK01599NOG132903FirmicutesRuminococcus98.1891.3636.97
glm3586360Lack 3'-endK01599NOG132903unknownunknown75.9998.4341.67
glm2246584CompleteK01599NOG132903unknownunknown99.797.3735.42
glm3316008Lack 3'-endK01599NOG132903unknownunknown80.8598.8939.93
glm2157130Lack 3'-endK01599NOG132903unknownunknown75.0870.2942.63
glm2126518CompleteK01599NOG132903unknownunknown97.8792.936.28
glm2394280CompleteK01599NOG132903unknownunknown97.8795.4534.74
glm2406944CompleteK01599NOG132903unknownunknown87.2385.7134.84
glm2405563CompleteK01599NOG132903unknownunknown87.2385.7134.84
glm3978165Lack both endsK01599NOG132903unknownunknown70.5298.338.3
glm2074388CompleteK01599NOG132903unknownunknown86.9378.7132.17
glm2151921CompleteK01599NOG132903unknownunknown83.5977.1430.91
glm2411610CompleteK01599NOG132903unknownunknown79.0379.9431.37
glm2437274CompleteK01599NOG132903unknownunknown75.3878.930.53
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382