MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-09-27 06:21:11 PST
Job id & description: 1221, test.2
Query type: protein
Count queries & homologs: 2, 16
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|Q9F0W4|NOSZ_PSEFL420445CompleteK00376COG4263Bacteroidetesunknown94.8493.3630.84
sp|Q9F0W4|NOSZ_PSEFL419823CompleteK00376COG4263Bacteroidetesunknown94.8493.3630.69
sp|Q9F0W4|NOSZ_PSEFL268768Lack 5'-endK00376COG4263unknownunknown86.5472.0632.39
sp|Q9F0W4|NOSZ_PSEFL895381Lack both endsK00376COG4263unknownunknown73.494.5132.01
sp|Q5XW77|CNBA_COMTE4083877CompleteK00540COG0778ProteobacteriaOxalobacter98.2496.9441.7
sp|Q5XW77|CNBA_COMTE4104698CompleteK00540COG0778ProteobacteriaOxalobacter96.4895.6142.01
sp|Q5XW77|CNBA_COMTE4079128CompleteK00540COG0778unknownunknown96.4893.8932.88
sp|Q5XW77|CNBA_COMTE4288641CompleteK00540COG0778unknownunknown94.2795.4332.71
sp|Q5XW77|CNBA_COMTE3891494Lack 5'-endK00540COG0778unknownunknown96.0489.9231.82
sp|Q5XW77|CNBA_COMTE4280138CompleteK00540COG0778unknownunknown94.2795.4332.24
sp|Q5XW77|CNBA_COMTE4284217CompleteK00540COG0778unknownunknown94.2795.4331.78
sp|Q5XW77|CNBA_COMTE4311213CompleteK00540COG0778FirmicutesLactobacillus95.1595.8731.25
sp|Q5XW77|CNBA_COMTE4319277CompleteK00540COG0778FirmicutesLactobacillus95.1595.8730.36
sp|Q5XW77|CNBA_COMTE4338526CompleteK00540COG0778FirmicutesLactobacillus94.7197.2430.73
sp|Q5XW77|CNBA_COMTE5757788Lack 3'-endK00540COG0778unknownunknown70.9394.5535.4
sp|Q5XW77|CNBA_COMTE4477892Lack 5'-endK00540COG0778unknownunknown91.1989.0530.18
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382