MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-10-04 05:59:18 PST
Job id & description: 1236, P0DOV6
Query type: protein
Count queries & homologs: 1, 34
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P0DOV6|SGL_PSEPU2927983CompleteK13874COG3386ProteobacteriaKlebsiella94.8593.8655.8
sp|P0DOV6|SGL_PSEPU2927368CompleteK13874COG3386ProteobacteriaKlebsiella92.4491.4756.88
sp|P0DOV6|SGL_PSEPU2936272CompleteK13874COG3386ProteobacteriaKlebsiella94.593.5256.0
sp|P0DOV6|SGL_PSEPU2557555CompleteK13874COG3386ProteobacteriaEnterobacter94.586.1655.27
sp|P0DOV6|SGL_PSEPU2928165CompleteK13874COG3386ProteobacteriaKlebsiella94.593.5255.27
sp|P0DOV6|SGL_PSEPU2988604CompleteK13874COG3386Proteobacteriaunknown94.594.4853.45
sp|P0DOV6|SGL_PSEPU2932851CompleteK13874COG3386ProteobacteriaKlebsiella92.4491.4756.13
sp|P0DOV6|SGL_PSEPU2588719CompleteK14274COG3386ProteobacteriaEnterobacter94.586.7153.82
sp|P0DOV6|SGL_PSEPU2986310CompleteK14274COG3386ProteobacteriaEnterobacter94.594.4852.73
sp|P0DOV6|SGL_PSEPU2674482CompleteK14274COG3386ProteobacteriaEnterobacter94.588.3953.09
sp|P0DOV6|SGL_PSEPU2451800CompleteK14274COG3386ProteobacteriaEnterobacter94.584.0553.45
sp|P0DOV6|SGL_PSEPU2986181CompleteK14274COG3386ProteobacteriaEnterobacter94.594.4853.45
sp|P0DOV6|SGL_PSEPU2986892CompleteK14274COG3386ProteobacteriaEnterobacter94.594.4852.73
sp|P0DOV6|SGL_PSEPU2988371CompleteK13874COG3386ProteobacteriaKlebsiella92.4492.4155.76
sp|P0DOV6|SGL_PSEPU2988489CompleteK14274COG3386ProteobacteriaEnterobacter94.594.4852.36
sp|P0DOV6|SGL_PSEPU2855549CompleteK13874COG3386unknownunknown99.3197.3232.42
sp|P0DOV6|SGL_PSEPU2943563CompleteK13874COG3386ProteobacteriaKlebsiella98.6399.3234.25
sp|P0DOV6|SGL_PSEPU2984350CompleteK13874COG3386unknownunknown97.2597.9331.62
sp|P0DOV6|SGL_PSEPU2444488Lack 5'-endK14274COG3386unknownunknown93.4780.9834.31
sp|P0DOV6|SGL_PSEPU3306621CompleteK14274COG3386unknownunknown94.8599.2635.36
sp|P0DOV6|SGL_PSEPU3267763CompleteK14274COG3386unknownunknown91.0794.4931.46
sp|P0DOV6|SGL_PSEPU3010229CompleteK14274COG3386unknownunknown94.8595.4933.45
sp|P0DOV6|SGL_PSEPU2981434CompleteK14274COG3386unknownunknown97.2597.9331.27
sp|P0DOV6|SGL_PSEPU3257098Lack 3'-endK14274COG3386unknownunknown90.3896.3533.09
sp|P0DOV6|SGL_PSEPU3018761CompleteK14274COG3386unknownunknown94.8595.4933.1
sp|P0DOV6|SGL_PSEPU2425069CompleteK13874COG3386unknownunknown96.5685.9830.34
sp|P0DOV6|SGL_PSEPU2956181CompleteK14274COG3386FirmicutesAnaerotruncus84.1983.932.39
sp|P0DOV6|SGL_PSEPU3125016CompleteK14274COG3386unknownunknown84.1983.2733.2
sp|P0DOV6|SGL_PSEPU2935968CompleteK13874COG3386unknownunknown86.687.3731.92
sp|P0DOV6|SGL_PSEPU3055713CompleteK13874COG3386unknownunknown97.2596.1430.77
sp|P0DOV6|SGL_PSEPU3081202CompleteK14274COG3386FirmicutesClostridium83.1684.1531.84
sp|P0DOV6|SGL_PSEPU3106264CompleteK14274COG3386unknownunknown86.689.3632.3
sp|P0DOV6|SGL_PSEPU3077201CompleteK14274COG3386unknownunknown94.594.7230.28
sp|P0DOV6|SGL_PSEPU2972305CompleteK13874COG3386Proteobacteriaunknown84.5483.8530.98
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382