MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-10-04 07:58:55 PST
Job id & description: 1253, P15684
Query type: protein
Count queries & homologs: 1, 5
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P15684|AMPN_RAT217933CompleteK01256COG0308Firmicutesunknown80.5288.7730.14
sp|P15684|AMPN_RAT218013CompleteK01256COG0308FirmicutesStreptococcus80.6288.7730.08
sp|P15684|AMPN_RAT216954CompleteK01256COG0308FirmicutesStreptococcus77.3185.2430.18
sp|P15684|AMPN_RAT217221CompleteK01256COG0308FirmicutesStreptococcus77.5185.4830.37
sp|P15684|AMPN_RAT218029CompleteK01256COG0308FirmicutesWeissella76.3783.8130.1
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382