MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-10-04 08:04:03 PST
Job id & description: 1256, Q9M0G0
Query type: protein
Count queries & homologs: 1, 75
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|Q9M0G0|GAGT3_ARATH624976CompleteK00681COG0405Proteobacteriaunknown81.1687.5637.14
sp|Q9M0G0|GAGT3_ARATH621385CompleteK00681COG0405ProteobacteriaProvidencia81.9588.2738.11
sp|Q9M0G0|GAGT3_ARATH640829CompleteK00681COG0405ProteobacteriaKlebsiella81.3289.537.15
sp|Q9M0G0|GAGT3_ARATH643700CompleteK00681COG0405ProteobacteriaEscherichia81.3289.6636.59
sp|Q9M0G0|GAGT3_ARATH580429CompleteK00681COG0405ProteobacteriaEscherichia81.1686.0736.84
sp|Q9M0G0|GAGT3_ARATH643160CompleteK00681COG0405ProteobacteriaEnterobacter80.5388.337.07
sp|Q9M0G0|GAGT3_ARATH627843CompleteK00681COG0405ProteobacteriaEscherichia81.3288.7436.4
sp|Q9M0G0|GAGT3_ARATH616077CompleteK00681COG0405ProteobacteriaEscherichia81.3288.1436.59
sp|Q9M0G0|GAGT3_ARATH644225CompleteK00681COG0405ProteobacteriaKlebsiella80.5388.4536.69
sp|Q9M0G0|GAGT3_ARATH580410CompleteK00681COG0405ProteobacteriaCitrobacter81.1686.0737.03
sp|Q9M0G0|GAGT3_ARATH616056CompleteK00681COG0405ProteobacteriaEnterobacter81.3288.1437.15
sp|Q9M0G0|GAGT3_ARATH642535CompleteK00681COG0405ProteobacteriaKlebsiella81.3289.536.59
sp|Q9M0G0|GAGT3_ARATH642746CompleteK00681COG0405ProteobacteriaEnterobacter80.5388.336.69
sp|Q9M0G0|GAGT3_ARATH643243CompleteK00681COG0405ProteobacteriaEnterobacter80.5388.336.31
sp|Q9M0G0|GAGT3_ARATH672087CompleteK00681COG0405ProteobacteriaKlebsiella80.5389.8436.31
sp|Q9M0G0|GAGT3_ARATH642709CompleteK00681COG0405ProteobacteriaEnterobacter80.5388.336.31
sp|Q9M0G0|GAGT3_ARATH642593CompleteK00681COG0405ProteobacteriaEnterobacter81.3289.536.4
sp|Q9M0G0|GAGT3_ARATH615189CompleteK00681COG0405ProteobacteriaProteus82.2688.3136.09
sp|Q9M0G0|GAGT3_ARATH643180CompleteK00681COG0405ProteobacteriaCitrobacter81.3289.535.83
sp|Q9M0G0|GAGT3_ARATH624056CompleteK00681COG0405unknownunknown81.3287.7336.88
sp|Q9M0G0|GAGT3_ARATH694092CompleteK00681COG0405FusobacteriaFusobacterium87.1391.8433.04
sp|Q9M0G0|GAGT3_ARATH634091CompleteK00681COG0405FusobacteriaFusobacterium73.1679.4535.71
sp|Q9M0G0|GAGT3_ARATH633171CompleteK00681COG0405FusobacteriaFusobacterium73.1679.4535.5
sp|Q9M0G0|GAGT3_ARATH618480CompleteK00681COG0405FusobacteriaFusobacterium81.087.6133.52
sp|Q9M0G0|GAGT3_ARATH620846CompleteK00681COG0405FusobacteriaFusobacterium73.1678.9135.29
sp|Q9M0G0|GAGT3_ARATH535097CompleteK00681COG0405FirmicutesClostridium87.684.734.62
sp|Q9M0G0|GAGT3_ARATH569303CompleteK00681COG0405FirmicutesClostridium72.6875.2934.26
sp|Q9M0G0|GAGT3_ARATH586908CompleteK00681COG0405unknownunknown87.9188.3333.57
sp|Q9M0G0|GAGT3_ARATH699995Lack 5'-endK00681COG0405unknownunknown76.9286.8333.73
sp|Q9M0G0|GAGT3_ARATH685627CompleteK00681COG0405FusobacteriaFusobacterium72.8481.1334.96
sp|Q9M0G0|GAGT3_ARATH649010CompleteK00681COG0405FusobacteriaFusobacterium80.0689.4633.21
sp|Q9M0G0|GAGT3_ARATH642770Lack 5'-endK00681COG0405FusobacteriaFusobacterium72.8479.1734.11
sp|Q9M0G0|GAGT3_ARATH554100CompleteK00681COG0405FirmicutesClostridium74.4176.3535.52
sp|Q9M0G0|GAGT3_ARATH593171CompleteK00681COG0405FirmicutesAcidaminococcus78.3483.2834.94
sp|Q9M0G0|GAGT3_ARATH623105Lack 3'-endK00681COG0405unknownunknown78.3483.8433.07
sp|Q9M0G0|GAGT3_ARATH591307CompleteK00681COG0405FirmicutesAcidaminococcus79.2884.2834.54
sp|Q9M0G0|GAGT3_ARATH788275CompleteK00681COG0405unknownunknown72.2185.0733.26
sp|Q9M0G0|GAGT3_ARATH621585CompleteK00681COG0405Fusobacteriaunknown86.8188.2733.45
sp|Q9M0G0|GAGT3_ARATH601013CompleteK00681COG0405unknownunknown78.0283.0334.58
sp|Q9M0G0|GAGT3_ARATH510085CompleteK00681COG0405Firmicutesunknown87.685.4432.19
sp|Q9M0G0|GAGT3_ARATH673745CompleteK00681COG0405unknownunknown79.2887.7432.69
sp|Q9M0G0|GAGT3_ARATH500065CompleteK00681COG0405unknownunknown87.684.331.54
sp|Q9M0G0|GAGT3_ARATH688619CompleteK00681COG0405Firmicutesunknown82.192.0531.27
sp|Q9M0G0|GAGT3_ARATH642557CompleteK00681COG0405unknownunknown72.6878.3133.69
sp|Q9M0G0|GAGT3_ARATH662710CompleteK00681COG0405unknownunknown79.2887.2833.46
sp|Q9M0G0|GAGT3_ARATH673100CompleteK00681COG0405unknownunknown79.7588.2731.74
sp|Q9M0G0|GAGT3_ARATH648414CompleteK00681COG0405unknownunknown87.2889.8130.93
sp|Q9M0G0|GAGT3_ARATH661454CompleteK00681COG0405FirmicutesClostridium78.3486.4333.46
sp|Q9M0G0|GAGT3_ARATH680194CompleteK00681COG0405unknownunknown78.4988.230.47
sp|Q9M0G0|GAGT3_ARATH672596CompleteK00681COG0405unknownunknown79.2887.7432.57
sp|Q9M0G0|GAGT3_ARATH730260CompleteK00681COG0405unknownunknown72.6883.031.92
sp|Q9M0G0|GAGT3_ARATH666819CompleteK00681COG0405unknownunknown79.2887.4333.33
sp|Q9M0G0|GAGT3_ARATH664019CompleteK00681COG0405unknownunknown78.3486.5931.7
sp|Q9M0G0|GAGT3_ARATH675765CompleteK00681COG0405FusobacteriaFusobacterium79.7588.4232.95
sp|Q9M0G0|GAGT3_ARATH664059CompleteK00681COG0405FirmicutesClostridium78.1886.0634.31
sp|Q9M0G0|GAGT3_ARATH657604CompleteK00681COG0405Firmicutesunknown79.7587.8532.76
sp|Q9M0G0|GAGT3_ARATH627329CompleteK00681COG0405unknownunknown94.1996.7632.14
sp|Q9M0G0|GAGT3_ARATH640920CompleteK00681COG0405unknownunknown79.7587.0930.64
sp|Q9M0G0|GAGT3_ARATH749138CompleteK00681COG0405unknownunknown87.1396.3430.94
sp|Q9M0G0|GAGT3_ARATH678866CompleteK00681COG0405unknownunknown79.2888.2231.05
sp|Q9M0G0|GAGT3_ARATH664878CompleteK00681COG0405unknownunknown78.4986.7630.47
sp|Q9M0G0|GAGT3_ARATH564180CompleteK00681COG0405unknownunknown80.2286.731.59
sp|Q9M0G0|GAGT3_ARATH673242CompleteK00681COG0405unknownunknown78.0286.5132.61
sp|Q9M0G0|GAGT3_ARATH664699CompleteK00681COG0405unknownunknown78.4986.7630.27
sp|Q9M0G0|GAGT3_ARATH1074499Lack 3'-endK00681COG0405unknownunknown70.1795.5831.66
sp|Q9M0G0|GAGT3_ARATH661813CompleteK00681COG0405unknownunknown78.3486.4330.0
sp|Q9M0G0|GAGT3_ARATH789876CompleteK00681COG0405FirmicutesAcidaminococcus73.084.4932.29
sp|Q9M0G0|GAGT3_ARATH777385CompleteK00681COG0405unknownunknown74.185.932.64
sp|Q9M0G0|GAGT3_ARATH782636CompleteK00681COG0405FirmicutesAcidaminococcus73.084.1730.9
sp|Q9M0G0|GAGT3_ARATH970480Lack 3'-endK00681COG0405unknownunknown73.091.530.17
sp|Q9M0G0|GAGT3_ARATH789511CompleteK00681COG0405FirmicutesMegasphaera73.7885.4230.35
sp|Q9M0G0|GAGT3_ARATH791013CompleteK00681COG0405unknownunknown79.2890.0930.04
sp|Q9M0G0|GAGT3_ARATH603802CompleteK00681COG0405unknownunknown73.077.131.72
sp|Q9M0G0|GAGT3_ARATH612107CompleteK00681COG0405unknownunknown73.077.6630.17
sp|Q9M0G0|GAGT3_ARATH1202852Lack 3'-endK00681COG0405unknownunknown72.5398.2430.17
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382