MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2018-10-04 08:13:44 PST
Job id & description: 1259, Q988D0
Query type: protein
Count queries & homologs: 1, 12
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|Q988D0|HMPD_RHILO4123241Lack 3'-endK01628COG0235unknownunknown88.4690.3531.1
sp|Q988D0|HMPD_RHILO4882460Lack 5'-endK01628COG0235unknownunknown76.0788.6630.27
sp|Q988D0|HMPD_RHILO4382968CompleteK01628COG0235FirmicutesAnaerostipes85.4788.3730.58
sp|Q988D0|HMPD_RHILO4290435CompleteK01628COG0235unknownunknown71.7973.5230.46
sp|Q988D0|HMPD_RHILO4487709CompleteK01628COG0235unknownunknown79.9184.2930.93
sp|Q988D0|HMPD_RHILO4663466CompleteK01628COG0235FirmicutesClostridium82.0591.6330.96
sp|Q988D0|HMPD_RHILO4831644CompleteK01628COG0235unknownunknown75.6485.7130.65
sp|Q988D0|HMPD_RHILO4519278CompleteK01628COG0235unknownunknown71.7977.0333.14
sp|Q988D0|HMPD_RHILO4503805CompleteK01628COG0235unknownunknown71.7977.0332.57
sp|Q988D0|HMPD_RHILO4242656CompleteK01628COG0235unknownunknown75.6478.7330.69
sp|Q988D0|HMPD_RHILO4403102CompleteK01628COG0235unknownunknown70.9474.330.0
sp|Q988D0|HMPD_RHILO4440592Lack 3'-endK01628COG0235unknownunknown79.4986.8531.5
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382