MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-02-11 12:24:57 PST
Job id & description: 1330, baie
Query type: protein
Count queries & homologs: 66, 34
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
WP_118383052.15096523CompleteunknownNOG46803unknownunknown100.0100.0100.0
tr|A0A3D1VEZ94968483Lack 5'-endunknownNOG46803unknownunknown100.092.6799.44
CCX46488.15372063CompleteunknownNOG46803unknownunknown100.0100.098.31
pdb|4L8O|A5622900CompleteunknownNOG46803FirmicutesClostridium89.89100.0100.0
EDS05766.15622748CompleteunknownNOG46803FirmicutesClostridium100.0100.0100.0
SRS020869-364985087212CompleteunknownbactNOG80390unknownunknown100.084.95100.0
SRS020869-364985084370CompleteunknownbactNOG80390unknownunknown100.084.9598.73
SRS013951-307734797528CompleteunknownbactNOG80390unknownunknown100.077.6699.35
SRS015663-contig-100_187295218188CompleteunknownNOG46803unknownunknown100.080.7798.64
SRS011529-75975529369CompleteunknownNOG46803unknownunknown97.3284.8100.0
SRS014235-489695572570CompleteunknownNOG46803unknownunknown100.084.1299.3
SRS015663_scaffolds-C29643376380848Lack 3'-endunknownNOG46803unknownunknown94.0100.0100.0
SRS014235-489695559495CompleteunknownNOG46803unknownunknown100.084.1295.1
CCX46488.15386538CompleteunknownNOG46803unknownunknown94.9295.4575.6
WP_117771350.15293377Lack 5'-endunknownNOG46803unknownunknown100.093.8573.96
CCX46488.16186686Lack 3'-endunknownNOG46803unknownunknown83.62100.081.08
WP_117771350.15487010Lack 5'-endunknownNOG46803unknownunknown100.097.1171.01
SRS011529-75975426957CompleteunknownNOG46803unknownunknown97.3283.4377.4
SRS013098-450996639450Lack 3'-endunknownNOG46803unknownunknown78.44100.086.26
SRS054956-29226836998Lack 5'-endunknownNOG67977unknownunknown76.4795.12100.0
CCX46488.16153623Lack 3'-endunknownNOG46803unknownunknown84.18100.073.15
SRS014235-489695763657Lack 5'-endunknownNOG46803Actinobacteriaunknown97.284.7671.94
SRS014235-489695790903CompleteunknownNOG46803ActinobacteriaEggerthella97.285.2871.22
WP_066581400.16365203Lack 5'-endunknownNOG46803unknownunknown78.794.2972.93
SRS015663-contig-100_187295093438CompleteunknownNOG46803unknownunknown100.079.0366.44
SRS013951-307735493022CompleteunknownNOG75812unknownunknown98.0478.6149.33
SRS020869-364984849983Lack 5'-endunknownNOG75812unknownunknown98.172.3148.39
SRS013951-307735786375Completeunknownunknownunknownunknown98.0483.4448.67
SRS013951-307734928737Lack 5'-endunknownNOG75812unknownunknown100.072.443.79
SRS011529-75976255277Lack 5'-endunknownunknownunknownunknown73.1573.6130.7
SRS015663-contig-100_187295635358Completeunknownunknownunknownunknown91.8479.1730.94
SRS015663_scaffolds-C29643375642690Completeunknownunknownunknownunknown84.6773.2130.47
SRS013098-450995644399Completeunknownunknownunknownunknown76.0573.8130.53
SRS142503-390845580910CompleteunknownbactNOG80390unknownunknown95.182.3530.71
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382