MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-02-15 17:22:46 PST
Job id & description: 1344, baie
Query type: protein
Count queries & homologs: 3, 11
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 25%, 25%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
SRS054956-2922_7-2212-1544-(6)6836998Lack 5'-endunknownNOG67977unknownunknown55.16100.0100.0
SRS054956_scaffolds-SRS0549565622900CompleteunknownNOG46803FirmicutesClostridium61.4375.7433.8
SRS054956_scaffolds-SRS0549565293377Lack 5'-endunknownNOG46803unknownunknown61.4371.5133.1
SRS054956_scaffolds-SRS0549565487010Lack 5'-endunknownNOG46803unknownunknown61.4373.9932.39
SRS053573-826_16-1657-989-(6)5622748CompleteunknownNOG46803FirmicutesClostridium61.4375.1531.91
SRS054956_scaffolds-SRS0549565386538CompleteunknownNOG46803unknownunknown62.7874.4331.03
SRS054956_scaffolds-SRS0549566153623Lack 3'-endunknownNOG46803unknownunknown61.4385.9130.99
SRS054956_scaffolds-SRS0549565093438CompleteunknownNOG46803unknownunknown66.3777.4232.7
SRS054956_scaffolds-SRS0549565218188CompleteunknownNOG46803unknownunknown64.1374.1831.97
SRS054956_scaffolds-SRS0549566365203Lack 5'-endunknownNOG46803unknownunknown52.0276.4331.4
SRS054956_scaffolds-SRS0549566380848Lack 3'-endunknownNOG46803unknownunknown63.6895.0430.82
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382