MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-02-16 05:56:09 PST
Job id & description: 1346, EmrR
Query type: protein
Count queries & homologs: 1, 27
Min % identity & max e-value: 30%, 1e-3
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
EmrR5406467CompleteK03712COG1846ProteobacteriaCitrobacter100.0100.096.59
EmrR5406640CompleteK03712COG1846ProteobacteriaCitrobacter100.0100.094.89
EmrR5308206CompleteK03712COG1846ProteobacteriaEnterobacter100.098.3293.75
EmrR5400006CompleteK03712COG1846ProteobacteriaEnterobacter100.0100.093.75
EmrR5403046CompleteK03712COG1846ProteobacteriaEnterobacter100.0100.093.18
EmrR4333536CompleteK03712COG1846ProteobacteriaKlebsiella100.081.1192.61
EmrR5401649CompleteK03712COG1846ProteobacteriaEnterobacter100.0100.092.05
EmrR5372521Lack 5'-endK03712COG1846ProteobacteriaKlebsiella100.099.4492.61
EmrR5378043CompleteK03712COG1846ProteobacteriaEscherichia99.4399.4393.14
EmrR5397832CompleteK03712COG1846ProteobacteriaEnterobacter100.0100.092.05
EmrR5527469CompleteK03712COG1846Proteobacteriaunknown96.0298.2676.92
EmrR5712887Lack 5'-endK03712COG1846ProteobacteriaKlebsiella80.1184.9491.49
EmrR6807285Lack 5'-endK03712COG1846ProteobacteriaEnterobacter70.45100.091.13
EmrR5424314CompleteK03712COG1846ProteobacteriaProteus93.7596.5767.46
EmrR5546247CompleteK03712COG1846unknownunknown93.1898.2567.26
EmrR5549743CompleteK03712COG1846ProteobacteriaProvidencia94.3299.4265.88
EmrR5760520CompleteK03712COG1846unknownunknown86.3692.6844.08
EmrR5687254CompleteK03712COG1846ProteobacteriaEscherichia86.9392.1738.56
EmrR5718777CompleteK03712COG1846ProteobacteriaEscherichia88.0793.3739.35
EmrR5169468CompleteK03712COG1846ProteobacteriaEscherichia89.7785.8735.44
EmrR5757226CompleteK03712COG1846unknownunknown92.0598.7833.33
EmrR5622887CompleteK03712COG1846ProteobacteriaEscherichia92.6198.2231.33
EmrR5436926CompleteK03712COG1846ProteobacteriaEscherichia88.6489.6630.82
EmrR6488906CompleteK03712COG1846FirmicutesGemella71.5991.1830.16
EmrR6046797CompleteK03712COG1846unknownunknown70.4579.6132.54
EmrR6244735CompleteunknownNOG85258Firmicutesunknown78.4193.7930.43
EmrR6380108CompleteK03712COG1846unknownunknown71.0281.4330.4
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382