MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-03-08 10:18:59 PST
Job id & description: 1351, msrq
Query type: protein
Count queries & homologs: 1, 24
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P76343|MSRQ_ECOLI4454118CompleteunknownCOG2717ProteobacteriaEscherichia100.0100.097.16
sp|P76343|MSRQ_ECOLI4476445CompleteunknownCOG2717ProteobacteriaEscherichia100.0100.096.68
sp|P76343|MSRQ_ECOLI4765442CompleteunknownCOG2717ProteobacteriaEscherichia92.8998.4992.35
sp|P76343|MSRQ_ECOLI4459832CompleteunknownCOG2717ProteobacteriaEscherichia100.0100.083.89
sp|P76343|MSRQ_ECOLI4765561CompleteunknownCOG2717ProteobacteriaCitrobacter92.8998.4986.73
sp|P76343|MSRQ_ECOLI4594249CompleteunknownCOG2717ProteobacteriaCitrobacter92.8995.1586.22
sp|P76343|MSRQ_ECOLI4760231CompleteunknownCOG2717ProteobacteriaEnterobacter92.8998.4982.14
sp|P76343|MSRQ_ECOLI5005707Lack 3'-endunknownCOG2717ProteobacteriaCitrobacter84.8394.2186.59
sp|P76343|MSRQ_ECOLI4754064CompleteunknownCOG2717ProteobacteriaKlebsiella92.8998.4980.61
sp|P76343|MSRQ_ECOLI4761543CompleteunknownCOG2717ProteobacteriaEnterobacter92.8998.4982.65
sp|P76343|MSRQ_ECOLI4758094CompleteunknownCOG2717ProteobacteriaEnterobacter92.8998.4982.14
sp|P76343|MSRQ_ECOLI4361633Lack 5'-endunknownCOG2717ProteobacteriaKlebsiella95.7393.5278.22
sp|P76343|MSRQ_ECOLI4761270CompleteunknownCOG2717ProteobacteriaEnterobacter92.8998.4982.65
sp|P76343|MSRQ_ECOLI4765341CompleteunknownCOG2717ProteobacteriaEnterobacter92.8998.4982.14
sp|P76343|MSRQ_ECOLI4746609CompleteunknownCOG2717ProteobacteriaKlebsiella92.8998.4981.63
sp|P76343|MSRQ_ECOLI4759770CompleteunknownCOG2717ProteobacteriaKlebsiella92.8998.4980.1
sp|P76343|MSRQ_ECOLI4533683CompleteunknownCOG2717ProteobacteriaCitrobacter91.9493.2775.77
sp|P76343|MSRQ_ECOLI4527126CompleteunknownCOG2717ProteobacteriaCitrobacter91.9493.2774.74
sp|P76343|MSRQ_ECOLI4746210CompleteunknownCOG2717ProteobacteriaKlebsiella92.8998.4980.61
sp|P76343|MSRQ_ECOLI5553941Lack 5'-endunknownCOG2717ProteobacteriaEnterobacter79.6298.2580.95
sp|P76343|MSRQ_ECOLI4765574CompleteunknownCOG2717Proteobacteriaunknown92.4297.4970.77
sp|P76343|MSRQ_ECOLI4684138CompleteunknownCOG2717ProteobacteriaProvidencia85.7888.6145.86
sp|P76343|MSRQ_ECOLI4760673CompleteunknownCOG2717unknownunknown96.6899.537.75
sp|P76343|MSRQ_ECOLI4565350CompleteunknownCOG2717unknownunknown91.093.7237.44
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382