MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-08-16 02:41:54 PST
Job id & description: 1483, tyrDC_test
Query type: protein
Count queries & homologs: 8, 8
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
QAV53956.1_L-tyrosine525212CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
AZV33183.1:1-636_tyrosine536501CompleteK01580COG0076FirmicutesEnterococcus97.48100.0100.0
QAV53955.1_L-tyrosine546922CompleteK01580COG0076FirmicutesEnterococcus100.099.1998.69
QAV53955.1_L-tyrosine524085CompleteK01580COG0076FirmicutesEnterococcus100.097.696.73
QAV53955.1_L-tyrosine556459CompleteK01580COG0076unknownunknown99.6799.6765.41
QAV53956.1_L-tyrosine547268CompleteK01580COG0076FirmicutesLactobacillus98.2499.6862.76
QAV53956.1_L-tyrosine528470CompleteK01580COG0076unknownunknown97.2897.7652.95
EEI60793.1:2-615_tyrosine479046CompleteK01580COG0076ProteobacteriaProvidencia98.796.1441.41
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382