MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-10-02 15:33:01 PST
Job id & description: 1515, pg
Query type: protein
Count queries & homologs: 1, 10
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
P80563_pyrogallol181167CompleteK07812COG0243unknownunknown98.8695.241.15
P80563_pyrogallol148323CompleteK07812COG0243unknownunknown98.9789.8733.52
P80563_pyrogallol199525CompleteK07812COG0243unknownunknown96.9192.6434.6
P80563_pyrogallol198078CompleteK07812COG0243unknownunknown96.5792.3134.37
P80563_pyrogallol178347CompleteK07812COG0243unknownunknown97.2693.5633.52
P80563_pyrogallol199505CompleteK07812COG0243unknownunknown97.0393.132.84
P80563_pyrogallol214466CompleteK07812COG0243unknownunknown97.2695.5331.07
P80563_pyrogallol198854CompleteK07812COG0243unknownunknown96.892.9932.18
P80563_pyrogallol287418Lack 5'-endK07812COG0243unknownunknown85.695.8732.58
P80563_pyrogallol325692Lack 5'-endK07812COG0243unknownunknown80.9195.5531.79
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusSubdoligranulum0.5626.2e-1562.86e-153
speciesSubdoligranulum_unclassified0.5611.21e-1552.86e-153
speciesClostridium_leptum0.5083.09e-1234.86e-121
speciesEubacterium_siraeum0.4722.3e-1042.71e-102
genusPseudoflavonifractor0.4661.36e-1011.07e-99
speciesPseudoflavonifractor_capillosus0.4661.36e-1011.07e-99
orderCoriobacteriales0.459.09e-945.36e-92
familyCoriobacteriaceae0.459.09e-945.36e-92
familyRuminococcaceae0.4471.77e-929.28e-91
genusAdlercreutzia0.4368.35e-883.58e-86
speciesAdlercreutzia_equolifaciens0.4368.35e-883.58e-86
speciesLachnospiraceae_bacterium_7_1_58FAA0.4242.47e-829.72e-81
phylumVerrucomicrobia0.4122.05e-775.38e-76
classVerrucomicrobiae0.4122.05e-775.38e-76
orderVerrucomicrobiales0.4122.05e-775.38e-76
familyVerrucomicrobiaceae0.4122.05e-775.38e-76
genusAkkermansia0.4122.05e-775.38e-76
speciesAkkermansia_muciniphila0.4122.05e-775.38e-76
genusCoprococcus0.4115.02e-771.25e-75
speciesEubacterium_hallii0.4058.99e-752.12e-73
speciesCoprococcus_catus0.4015.13e-731.15e-71
classClostridia0.3961.99e-714.08e-70
orderClostridiales0.3961.99e-714.08e-70
genusCollinsella0.3934.86e-709.56e-69
speciesRuminococcus_obeum0.3935.54e-701.05e-68
speciesAnaerotruncus_unclassified0.3891.25e-682.27e-67
speciesCollinsella_aerofaciens0.3884.2e-687.34e-67
familyFusobacteriaceae-0.3789.32e-651.57e-63
phylumFusobacteria-0.3781.03e-641.57e-63
classFusobacteriia-0.3781.03e-641.57e-63
orderFusobacteriales-0.3781.03e-641.57e-63
genusRuminococcaceae_noname0.3752.14e-633.06e-62
speciesRuminococcaceae_bacterium_D160.3752.14e-633.06e-62
genusAnaerotruncus0.3744.28e-635.94e-62
genusFusobacterium-0.3731.06e-621.43e-61
genusDorea0.3691.63e-612.14e-60
speciesDorea_longicatena0.3684.53e-615.78e-60
speciesCoprococcus_comes0.3653.6e-604.47e-59
familyBacteroidales_noname0.3632.64e-593.04e-58
genusBacteroidales_noname0.3632.64e-593.04e-58
speciesBacteroidales_bacterium_ph80.3632.64e-593.04e-58
genusRuminococcus0.3632.78e-593.12e-58
genusMethanobrevibacter0.3618e-598.78e-58
speciesLachnospiraceae_bacterium_3_1_46FAA0.3611.61e-581.73e-57
speciesMethanobrevibacter_smithii0.3595.72e-586e-57
classMethanobacteria0.3596.86e-586.75e-57
orderMethanobacteriales0.3596.86e-586.75e-57
familyMethanobacteriaceae0.3596.86e-586.75e-57
speciesEubacterium_ramulus0.3535.51e-565.31e-55
speciesHaemophilus_parainfluenzae-0.3521.02e-559.63e-55
genusHaemophilus-0.355.15e-554.77e-54
phylumEuryarchaeota0.3482.01e-541.82e-53
speciesRuminococcus_gnavus-0.3483.14e-542.8e-53
orderPasteurellales-0.3467.04e-546.04e-53
familyPasteurellaceae-0.3467.04e-546.04e-53
genusVeillonella-0.3376.98e-515.88e-50
speciesOscillibacter_unclassified0.3352.8e-502.32e-49
speciesRuminococcus_sp_5_1_39BFAA0.3323.13e-492.55e-48
familyOscillospiraceae0.3292.42e-481.9e-47
genusOscillibacter0.3292.42e-481.9e-47
speciesBifidobacterium_adolescentis0.3271e-477.74e-47
classGammaproteobacteria-0.3238.37e-476.37e-46
speciesVeillonella_parvula-0.3222.04e-461.53e-45
phylumFirmicutes0.3191.58e-451.17e-44
speciesVeillonella_unclassified-0.3183.36e-452.44e-44
genusBarnesiella0.3178.84e-456.23e-44
speciesBarnesiella_intestinihominis0.3178.84e-456.23e-44
speciesDorea_formicigenerans0.3144.72e-443.28e-43
genusGordonibacter0.3112.42e-431.63e-42
speciesGordonibacter_pamelaeae0.3112.42e-431.63e-42
phylumActinobacteria0.316.35e-434.16e-42
classActinobacteria0.316.35e-434.16e-42
speciesClostridium_nexile-0.317.14e-434.62e-42
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3091.42e-429.06e-42
speciesKlebsiella_pneumoniae-0.3081.95e-421.23e-41
speciesErysipelotrichaceae_bacterium_21_30.3051.16e-417.2e-41
classBacteroidia-0.3028.68e-415.22e-40
orderBacteroidales-0.3028.68e-415.22e-40
phylumBacteroidetes-0.3028.73e-415.22e-40
genusKlebsiella-0.3028.97e-415.29e-40
familyEubacteriaceae0.2971.82e-391.06e-38
genusEubacterium0.2971.95e-391.12e-38
phylumProteobacteria-0.2956.58e-393.74e-38
familyRikenellaceae0.2932.76e-381.53e-37
genusAlistipes0.2932.76e-381.53e-37
speciesAlistipes_senegalensis0.2925.26e-382.89e-37
speciesHoldemania_filiformis0.2893.15e-371.71e-36
familyBacteroidaceae-0.2878.11e-374.3e-36
genusBacteroides-0.2878.11e-374.3e-36
genusHoldemania0.2781.28e-346.71e-34
speciesMegasphaera_micronuciformis-0.2741.18e-336.12e-33
speciesRuminococcus_bromii0.2741.22e-336.26e-33
speciesAnaerostipes_hadrus0.2741.7e-338.63e-33
speciesRoseburia_hominis0.2724.88e-332.45e-32
speciesVeillonella_atypica-0.2717.21e-333.58e-32
speciesVeillonella_dispar-0.2717.32e-333.6e-32
speciesAlistipes_onderdonkii0.2683.92e-321.91e-31
orderEnterobacteriales-0.2635.18e-312.47e-30
familyEnterobacteriaceae-0.2635.18e-312.47e-30
speciesStreptococcus_thermophilus0.2587.98e-303.77e-29
speciesMethanobrevibacter_unclassified0.2562.77e-291.29e-28
speciesFusobacterium_mortiferum-0.2545.06e-292.34e-28
speciesFusobacterium_ulcerans-0.2521.97e-289.03e-28
speciesEubacterium_rectale0.2481.33e-276.04e-27
speciesOlsenella_unclassified0.2463.24e-271.46e-26
speciesBlautia_hydrogenotrophica0.2464.12e-271.83e-26
genusEscherichia-0.2456.87e-273.03e-26
speciesEscherichia_coli-0.2413.32e-261.45e-25
genusButyrivibrio0.2323.35e-241.44e-23
speciesFusobacterium_varium-0.2323.35e-241.44e-23
speciesAlistipes_indistinctus0.236.17e-242.62e-23
genusPrevotella-0.236.99e-242.95e-23
genusOlsenella0.2249.08e-233.77e-22
familyOxalobacteraceae0.2249.11e-233.77e-22
genusOxalobacter0.2241.12e-224.56e-22
speciesOxalobacter_formigenes0.2241.12e-224.56e-22
speciesBifidobacterium_longum0.2231.51e-226.09e-22
genusMegasphaera-0.2231.68e-226.72e-22
speciesPrevotella_stercorea-0.2231.87e-227.42e-22
speciesPrevotella_buccae-0.2213.62e-221.42e-21
speciesAlistipes_putredinis0.2213.69e-221.44e-21
genusBifidobacterium0.2197.86e-223.04e-21
orderBifidobacteriales0.2199.73e-223.7e-21
familyBifidobacteriaceae0.2199.73e-223.7e-21
speciesMegamonas_unclassified-0.2172.8e-211.06e-20
speciesAlistipes_sp_AP110.2163.65e-211.37e-20
genusEnterobacter-0.2163.76e-211.4e-20
genusMegamonas-0.2164.03e-211.49e-20
speciesEubacterium_cylindroides0.2154.95e-211.81e-20
genusDesulfovibrio0.2155.23e-211.9e-20
genusAnaerostipes0.2155.93e-212.14e-20
speciesEubacterium_ventriosum0.2148.82e-213.15e-20
speciesAlistipes_shahii0.2122.33e-208.27e-20
speciesEnterobacter_cloacae-0.2113.14e-201.11e-19
speciesSubdoligranulum_sp_4_3_54A2FAA0.2095.68e-201.99e-19
speciesRuminococcus_torques0.2071.3e-194.51e-19
speciesCoprococcus_sp_ART55_10.2045.87e-192.02e-18
speciesBacteroides_stercoris-0.2011.47e-185.03e-18
speciesRuminococcus_lactaris0.2012.04e-186.93e-18
speciesFusobacterium_nucleatum-0.22.11e-187.11e-18
speciesPrevotella_copri-0.1993.43e-181.15e-17
speciesClostridium_ramosum-0.1977.54e-182.51e-17
speciesCoprobacillus_unclassified-0.1977.96e-182.63e-17
speciesLactobacillus_salivarius-0.1961.01e-173.3e-17
genusActinobacillus-0.1961.02e-173.3e-17
speciesActinobacillus_unclassified-0.1961.02e-173.3e-17
familySiphoviridae0.1951.8e-175.78e-17
speciesLactobacillus_mucosae-0.1934.18e-171.33e-16
genusC2likevirus0.1918.18e-172.59e-16
familyLachnospiraceae0.1919.16e-172.88e-16
speciesClostridium_perfringens-0.1919.57e-172.99e-16
speciesC2likevirus_unclassified0.1891.44e-164.47e-16
speciesCampylobacter_concisus-0.1882.42e-167.47e-16
speciesAlistipes_finegoldii0.1873.8e-161.16e-15
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1864.78e-161.46e-15
genusAggregatibacter-0.1841.13e-153.42e-15
speciesBacteroides_plebeius-0.1821.89e-155.68e-15
speciesBacteroides_fragilis-0.1822.29e-156.84e-15
speciesBacteroides_ovatus-0.1813.65e-151.08e-14
speciesAggregatibacter_segnis-0.1771.35e-143.98e-14
genusCoprobacter0.1761.6e-144.66e-14
speciesCoprobacter_fastidiosus0.1761.6e-144.66e-14
speciesLactococcus_lactis0.1761.9e-145.5e-14
genusCoprobacillus-0.1761.91e-145.5e-14
genusOdoribacter0.1752.83e-148.1e-14
speciesPropionibacterium_freudenreichii0.1743.15e-148.96e-14
speciesMitsuokella_unclassified0.1734.2e-141.19e-13
speciesDesulfovibrio_desulfuricans0.1734.23e-141.19e-13
familyVeillonellaceae-0.1734.7e-141.31e-13
speciesBacteroides_thetaiotaomicron-0.1725.99e-141.66e-13
speciesBacteroides_xylanisolvens-0.171.51e-134.17e-13
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1692.05e-135.63e-13
genusPantoea-0.1682.64e-137.16e-13
speciesPantoea_unclassified-0.1682.64e-137.16e-13
genusMitsuokella0.1683.04e-138.2e-13
speciesBacteroides_cellulosilyticus0.1673.28e-138.8e-13
speciesErysipelotrichaceae_bacterium_6_1_450.1621.7e-124.53e-12
speciesMegamonas_hypermegale-0.1594.03e-121.07e-11
genusLactococcus0.1587.02e-121.85e-11
phylumViruses_noname0.1579.42e-122.46e-11
classViruses_noname0.1579.42e-122.46e-11
classErysipelotrichia0.1561.09e-112.8e-11
orderErysipelotrichales0.1561.09e-112.8e-11
familyErysipelotrichaceae0.1561.09e-112.8e-11
speciesClostridium_bolteae-0.1532.91e-117.42e-11
speciesOdoribacter_laneus0.1533e-117.61e-11
orderCaudovirales0.1524.38e-111.11e-10
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1515.85e-111.47e-10
speciesLactococcus_phage_P6800.156.52e-111.63e-10
speciesHoldemania_unclassified0.1499.72e-112.41e-10
genusLachnospiraceae_noname0.1499.85e-112.43e-10
speciesButyrivibrio_crossotus0.1462.08e-105.11e-10
speciesBifidobacterium_pseudocatenulatum-0.1462.31e-105.65e-10
speciesAnaerostipes_unclassified-0.1462.53e-106.16e-10
speciesMegamonas_rupellensis-0.1452.71e-106.56e-10
speciesBacteroides_pectinophilus0.1452.95e-107.09e-10
speciesButyrivibrio_unclassified0.1452.96e-107.09e-10
genusCitrobacter-0.1453.25e-107.75e-10
speciesLachnospiraceae_bacterium_5_1_63FAA0.1444.11e-109.75e-10
speciesBifidobacterium_animalis0.1435.36e-101.26e-09
genusErysipelotrichaceae_noname0.1435.72e-101.34e-09
speciesOdoribacter_splanchnicus0.1426.23e-101.46e-09
speciesHaemophilus_paraphrohaemolyticus-0.1426.51e-101.51e-09
speciesCitrobacter_freundii-0.1419.38e-102.17e-09
speciesAnaerotruncus_colihominis0.1411e-092.3e-09
speciesStreptococcus_pasteurianus-0.1381.9e-094.35e-09
genusPropionibacterium0.1382.04e-094.65e-09
familyPrevotellaceae-0.1382.09e-094.74e-09
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1363.48e-097.86e-09
speciesClostridiales_bacterium_1_7_47FAA-0.1363.72e-098.36e-09
speciesStreptococcus_mitis_oralis_pneumoniae-0.1354.77e-091.07e-08
speciesClostridium_sp_L2_500.1346.19e-091.38e-08
speciesCitrobacter_unclassified-0.1346.4e-091.42e-08
classEpsilonproteobacteria-0.1321.06e-082.33e-08
orderCampylobacterales-0.1321.06e-082.33e-08
speciesBifidobacterium_catenulatum0.1311.32e-082.88e-08
speciesEubacterium_biforme0.131.73e-083.76e-08
genusCampylobacter-0.1282.59e-085.61e-08
genusTuricibacter0.1282.71e-085.84e-08
speciesClostridium_symbiosum-0.1282.74e-085.88e-08
speciesDesulfovibrio_piger0.1282.77e-085.92e-08
speciesEnterobacter_aerogenes-0.1283.03e-086.44e-08
speciesEggerthella_lenta0.1273.32e-087.03e-08
speciesTuricibacter_unclassified0.1273.66e-087.71e-08
familyCampylobacteraceae-0.1246.97e-081.46e-07
speciesBacteroides_vulgatus-0.1247.64e-081.6e-07
genusSiphoviridae_noname0.1239.43e-081.96e-07
genusDialister0.1239.74e-082.02e-07
classDeltaproteobacteria0.1231.03e-072.1e-07
orderDesulfovibrionales0.1231.03e-072.1e-07
familyDesulfovibrionaceae0.1231.03e-072.1e-07
speciesWeissella_confusa-0.1221.07e-072.18e-07
classNegativicutes-0.1221.17e-072.36e-07
orderSelenomonadales-0.1221.17e-072.36e-07
familyPropionibacteriaceae0.1221.18e-072.37e-07
speciesHaemophilus_sputorum-0.1211.51e-073.02e-07
speciesBacteroides_coprocola-0.1192.32e-074.62e-07
speciesCoprococcus_eutactus0.1183.08e-076.11e-07
speciesStreptococcus_anginosus-0.1173.93e-077.76e-07
familyMyoviridae-0.1165.12e-071.01e-06
speciesRuminococcus_champanellensis0.1155.55e-071.09e-06
speciesAlistipes_sp_HGB50.1138.63e-071.68e-06
genusWeissella-0.1139.31e-071.81e-06
genusMethanosphaera0.1139.44e-071.82e-06
speciesMethanosphaera_stadtmanae0.1139.44e-071.82e-06
speciesBacteroides_uniformis0.1111.66e-063.19e-06
classBetaproteobacteria-0.112.06e-063.94e-06
speciesMegamonas_funiformis-0.1092.11e-064.02e-06
speciesStreptococcus_infantarius-0.1092.28e-064.32e-06
speciesClostridium_clostridioforme-0.1092.29e-064.32e-06
speciesEubacterium_limosum0.1082.97e-065.59e-06
speciesErysipelotrichaceae_bacterium_2_2_44A0.1064.25e-067.96e-06
speciesRuminococcus_callidus0.1054.91e-069.16e-06
genusCoriobacteriaceae_noname0.1046.19e-061.15e-05
speciesStreptococcus_lutetiensis-0.1037.39e-061.37e-05
speciesMegasphaera_unclassified-0.1038.28e-061.53e-05
familyPorphyromonadaceae0.1021.03e-051.89e-05
speciesCoriobacteriaceae_bacterium_phI0.1021.04e-051.9e-05
familySutterellaceae-0.1011.13e-052.06e-05
orderBurkholderiales-0.1011.26e-052.29e-05
speciesTuricibacter_sanguinis0.1011.27e-052.3e-05
speciesOscillibacter_sp_KLE_17450.1011.28e-052.31e-05
speciesDialister_invisus0.0991.66e-052.98e-05
speciesRoseburia_unclassified0.0982.27e-054.06e-05
genusFaecalibacterium0.0972.73e-054.84e-05
speciesFaecalibacterium_prausnitzii0.0972.73e-054.84e-05
speciesStreptococcus_australis-0.0963.23e-055.71e-05
genusCatenibacterium0.0953.8e-056.67e-05
speciesCatenibacterium_mitsuokai0.0953.8e-056.67e-05
genusBlautia0.0935.24e-059.16e-05
speciesPorphyromonas_asaccharolytica0.0926.87e-050.00012
speciesWeissella_cibaria-0.0926.94e-050.00012
speciesClostridium_citroniae-0.0926.98e-050.000121
genusActinomyces0.0918.54e-050.000147
speciesBacteroides_massiliensis-0.099.64e-050.000165
familyActinomycetaceae0.090.0001050.00018
speciesKlebsiella_sp_MS_92_3-0.090.0001060.000181
orderActinomycetales0.0890.000110.000187
speciesEscherichia_unclassified-0.0880.0001320.000223
speciesLactobacillus_casei_paracasei0.0880.0001340.000226
speciesEubacterium_eligens0.0880.0001390.000233
speciesBacteroides_finegoldii-0.0880.0001420.000238
speciesClostridium_sp_ATCC_BAA_442-0.0870.0001640.000274
genusMorganella-0.0850.0002290.000379
speciesMorganella_morganii-0.0850.0002290.000379
genusFlavonifractor-0.0850.0002340.000385
speciesFlavonifractor_plautii-0.0850.0002340.000385
speciesClostridium_spiroforme0.0850.0002350.000385
familyAcidaminococcaceae0.0850.0002430.000397
speciesBacteroides_sp_3_1_19-0.0850.0002470.000402
speciesKlebsiella_unclassified-0.0830.0003040.000493
genusPorphyromonas0.0820.0003630.000587
speciesLactobacillus_delbrueckii0.0820.000370.000596
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0820.000390.000626
speciesRuminococcus_sp_JC3040.0810.000420.000672
speciesLactobacillus_crispatus-0.0810.0004290.000684
speciesEubacterium_dolichum-0.0810.000470.000747
speciesLactococcus_phage_phi70.0810.0004860.00077
genusAcidaminococcaceae_unclassified0.080.0005150.000813
speciesLactobacillus_oris-0.080.000530.000834
speciesBacteroides_nordii-0.0780.0006840.00107
speciesLactobacillus_sanfranciscensis-0.0780.0006970.00109
speciesStreptococcus_gordonii-0.0770.0008040.00125
speciesBifidobacterium_breve-0.0770.0008210.00127
speciesOdoribacter_unclassified0.0770.0008640.00134
genusMyoviridae_noname-0.0760.001080.00167
genusLeuconostoc0.0750.001210.00185
speciesAcidaminococcus_unclassified0.0750.001210.00185
speciesLactobacillus_rhamnosus0.0740.001440.0022
familyBacillales_noname-0.0730.001470.00223
genusGemella-0.0730.001470.00223
speciesBilophila_wadsworthia0.0730.001650.0025
speciesKlebsiella_oxytoca-0.0720.001890.00285
genusPeptostreptococcus-0.0720.001970.00296
genusProteus-0.0710.0020.003
speciesPeptostreptococcus_stomatis-0.0710.002150.00321
speciesClostridium_asparagiforme0.070.00250.00372
speciesParaprevotella_unclassified0.070.002510.00373
speciesLactococcus_phage_jm20.070.002540.00376
speciesBacteroides_oleiciplenus-0.0680.003140.00463
genusBilophila0.0680.003410.00501
genusParaprevotella0.0670.003660.00536
orderBacillales-0.0670.003880.00567
speciesLeuconostoc_lactis-0.0660.004240.00618
speciesEggerthella_sp_1_3_56FAA0.0660.004350.00632
speciesEubacterium_sp_3_1_310.0660.004460.00645
speciesCollinsella_intestinalis-0.0660.004470.00645
speciesBilophila_unclassified0.0640.005360.00771
speciesParabacteroides_merdae0.0640.005870.00842
speciesStreptococcus_salivarius-0.0630.00610.00872
speciesParabacteroides_unclassified-0.0630.00620.00883
speciesProteus_mirabilis-0.0630.006210.00883
orderViruses_noname0.0620.007020.00992
familyLactobacillaceae-0.0620.007020.00992
speciesSutterella_wadsworthensis0.0620.007620.0107
speciesLactobacillus_fermentum-0.0610.007950.0112
speciesParabacteroides_sp_D130.0610.007980.0112
speciesAcidaminococcus_intestini-0.0610.008260.0115
speciesLactobacillus_vaginalis-0.0610.008450.0118
speciesDorea_unclassified-0.0610.00870.0121
speciesSutterella_parvirubra-0.060.008950.0124
genusPyramidobacter-0.060.00940.0129
speciesPyramidobacter_piscolens-0.060.00940.0129
speciesLactobacillus_acidophilus0.060.009880.0136
speciesPeptostreptococcus_anaerobius0.0590.01070.0146
speciesLactobacillus_amylovorus-0.0590.01080.0147
speciesClostridium_sp_KLE_17550.0580.01170.0159
genusLactobacillus-0.0580.01230.0167
familyBurkholderiales_noname-0.0580.01270.0172
speciesBifidobacterium_bifidum0.0570.01310.0177
speciesParabacteroides_sp_20_30.0570.01390.0187
genusBurkholderiales_noname-0.0560.01560.0209
speciesBurkholderiales_bacterium_1_1_47-0.0560.01560.0209
speciesParaprevotella_xylaniphila0.0560.01590.0212
classBacilli-0.0550.01730.023
genusPhascolarctobacterium0.0530.02310.0305
speciesPhascolarctobacterium_succinatutens0.0530.02310.0305
familyClostridiales_noname0.0520.02380.0314
speciesBlautia_producta-0.0520.02470.0325
speciesBacteroides_faecis-0.0520.02510.0329
orderLactobacillales-0.0520.02530.0331
speciesBifidobacterium_dentium-0.0520.02560.0334
genusClostridiales_noname-0.0520.02580.0335
speciesParaprevotella_clara0.0510.0260.0337
speciesRoseburia_intestinalis0.050.0290.0375
familyClostridiaceae-0.0490.03280.0422
genusClostridiaceae_noname0.0490.03290.0422
speciesClostridiaceae_bacterium_JC1180.0490.03290.0422
speciesBacteroides_salanitronis0.0490.03310.0423
genusClostridium-0.0490.03580.0457
speciesClostridium_hathewayi-0.0480.03660.0466
genusSutterella0.0480.03680.0467
speciesBacteroides_salyersiae-0.0480.03820.0483
genusParasutterella-0.0470.04060.0511
speciesParasutterella_excrementihominis-0.0470.04060.0511
genusParvimonas0.0470.04380.055
speciesParvimonas_unclassified0.0460.04460.0558
speciesLactococcus_garvieae-0.0450.0510.0637
speciesCollinsella_tanakaei0.0440.0560.0697
phylumSynergistetes-0.0440.05750.0709
classSynergistia-0.0440.05750.0709
orderSynergistales-0.0440.05750.0709
familySynergistaceae-0.0440.05750.0709
speciesStreptococcus_sanguinis-0.0430.06030.0741
speciesLactobacillus_plantarum0.0430.06080.0745
speciesBacteroides_clarus0.0430.06240.0763
speciesSlackia_piriformis0.0420.06750.0823
speciesBifidobacterium_angulatum0.0420.07240.0881
speciesLachnospiraceae_bacterium_1_1_57FAA0.0410.07420.09
speciesPeptostreptococcaceae_noname_unclassified0.0410.0750.0908
speciesLachnospiraceae_bacterium_8_1_57FAA0.0410.07850.0948
speciesPrevotella_bivia-0.0410.07890.095
speciesMegasphaera_elsdenii-0.040.080.0961
orderPseudomonadales0.040.08020.0961
speciesRoseburia_inulinivorans-0.040.08340.0997
speciesEnterococcus_faecalis-0.040.08520.102
familySuccinivibrionaceae0.0380.09970.119
genusStreptococcus-0.0380.1040.123
speciesOscillibacter_sp_KLE_17280.0360.1160.137
speciesStreptococcus_parasanguinis0.0360.1240.146
speciesDialister_succinatiphilus0.0350.1280.151
speciesBacteroides_eggerthii0.0350.1310.154
speciesAlistipes_unclassified0.0340.140.164
familyClostridiales_Family_XI_Incertae_Sedis0.0340.1440.168
speciesParabacteroides_goldsteinii0.0340.1460.17
genusSuccinatimonas0.0330.1510.175
speciesSuccinatimonas_hippei0.0330.1510.175
speciesGemella_morbillorum-0.0330.1530.177
speciesParabacteroides_distasonis-0.0330.1570.181
speciesLactococcus_phage_936_sensu_lato0.0320.1650.19
genusEnterococcus-0.0310.1780.204
familyEnterococcaceae-0.0310.1860.213
speciesHoldemania_sp_AP20.030.1890.216
familyStreptococcaceae-0.030.1950.222
genusAcidaminococcus0.030.1970.224
speciesStreptococcus_vestibularis-0.030.1970.224
genusButyricimonas0.030.2010.227
speciesButyricimonas_synergistica0.030.2010.227
speciesLachnospiraceae_bacterium_5_1_57FAA0.0280.2250.253
speciesEnterobacteria_phage_HK544-0.0280.2320.261
speciesPorphyromonas_uenonis0.0270.2480.278
genusSlackia0.0240.3020.338
speciesLactococcus_phage_bIL670.0240.3030.338
speciesBacteroides_caccae0.0240.3080.343
speciesParabacteroides_johnsonii0.0230.3280.364
speciesLactobacillus_ruminis0.0230.330.366
genusSutterellaceae_unclassified-0.0220.340.376
genusRoseburia-0.0210.3720.409
speciesLactobacillus_gasseri-0.0210.3720.409
speciesBacteroides_barnesiae0.0210.3750.412
familyPodoviridae0.0190.40.438
speciesBacteroides_fluxus-0.0190.4010.438
speciesEggerthella_unclassified-0.0190.4110.448
genusPeptostreptococcaceae_noname-0.0190.420.457
speciesEnterococcus_faecium-0.0170.4640.503
genusLambdalikevirus-0.0160.4780.517
familyPeptostreptococcaceae-0.0160.4810.52
speciesBacteroides_sp_1_1_60.0160.4920.529
speciesBacteroides_coprophilus-0.0160.4920.529
genusSolobacterium-0.0150.510.546
speciesSolobacterium_moorei-0.0150.510.546
speciesStreptococcus_mutans-0.0140.5490.586
genusParabacteroides-0.0140.5580.595
speciesLachnospiraceae_bacterium_1_4_56FAA0.0130.570.606
familyLeuconostocaceae-0.0130.5810.615
speciesRothia_mucilaginosa-0.0130.5810.615
genusStaphylococcus0.0120.5950.628
familyStaphylococcaceae0.0120.610.643
speciesLactobacillus_reuteri-0.0110.6240.656
speciesClostridium_bartlettii-0.0110.6310.662
speciesMitsuokella_multacida-0.0110.6390.669
genusPeptoniphilus-0.0110.6430.671
speciesCollinsella_unclassified-0.0080.7250.755
speciesBacteroides_intestinalis-0.0070.7550.785
speciesKlebsiella_phage_KP360.0070.7680.797
speciesCoprobacillus_sp_29_10.0070.7770.804
speciesAcidaminococcus_fermentans-0.0060.780.806
orderAeromonadales-0.0060.7850.809
familyViruses_noname-0.0050.820.841
genusViruses_noname-0.0050.820.841
speciesBacteroides_sp_4_3_47FAA-0.0050.8240.844
speciesBacteroides_sp_2_1_22-0.0040.8650.884
speciesErysipelotrichaceae_bacterium_3_1_53-0.0040.8720.889
speciesBacteroides_dorei0.0030.9090.925
genusRothia0.0020.9140.928
genusButyricicoccus-0.0020.9180.928
speciesButyricicoccus_pullicaecorum-0.0020.9180.928
familyMicrococcaceae0.0020.9290.937
speciesCoprobacillus_sp_D60.0020.9320.938
speciesStreptococcus_phage_Sfi21-0.0010.9540.958
genusTunalikevirus-0.0010.9610.963
genusEggerthella0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201145.21263777547e-050.0003437727721842.44799847501e-0629709.97682
Crohns diseaseSpain17660.0001655519379190.0008088513791363.80044800511e-064981.65586
Rheumatoid arthritisChina127980.0005191718659170.0002355938755720.000239956856253740.246774
Type II diabetesSweden53920.001885318028650.003272663234360.00128876095836550.186251
Type II diabetesChina1831850.0004950426382170.0002199519856930.0447631880648668422.0893
Ulcerative colitisSpain78660.001078574075220.0008088513791360.10795972438738724.3683
Type II diabetesDenmark752770.00137473802790.000871215401980.1101405306411002632.8646
ObesityDenmark1691230.0007405202080180.001050720398850.2089346350651132437.2365
Colorectal cancerAustria64350.002218834083820.002540387950080.5754908461532000767.6918
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382