MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-10-02 15:33:32 PST
Job id & description: 1516, pgh
Query type: protein
Count queries & homologs: 1, 27
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
P80564_pyrogallol3353271CompleteK08358COG0437unknownunknown98.1898.543.22
P80564_pyrogallol3352217CompleteK08358COG0437unknownunknown98.1898.539.29
P80564_pyrogallol3210926CompleteK08358COG0437unknownunknown100.096.7440.36
P80564_pyrogallol3290717CompleteK08358COG0437unknownunknown90.5190.0439.77
P80564_pyrogallol3242384CompleteK08358COG0437unknownunknown90.5188.6940.62
P80564_pyrogallol4183053Lack 3'-endK08358COG0437unknownunknown82.4898.2245.49
P80564_pyrogallol3322579Lack 5'-endK08358COG0437unknownunknown98.1898.5137.5
P80564_pyrogallol3250817CompleteK08358COG0437unknownunknown98.1896.736.69
P80564_pyrogallol3255408CompleteK08358COG0437unknownunknown90.5189.0139.22
P80564_pyrogallol4095557Lack 3'-endK08358COG0437unknownunknown83.9498.2539.66
P80564_pyrogallol3493023CompleteK08358COG0437unknownunknown97.4597.336.0
P80564_pyrogallol3402958CompleteK08358COG0437unknownunknown98.1897.7333.21
P80564_pyrogallol3353658CompleteK08358COG0437unknownunknown100.097.3831.79
P80564_pyrogallol3793136CompleteunknownCOG0437unknownunknown86.590.5335.95
P80564_pyrogallol3404359CompleteK08358COG0437unknownunknown98.1897.7332.12
P80564_pyrogallol4032325CompleteK08358COG0437unknownunknown77.3788.3134.39
P80564_pyrogallol3666937Lack 5'-endK08358COG0437unknownunknown88.6998.832.58
P80564_pyrogallol3791487CompleteunknownCOG0437unknownunknown86.8690.9534.57
P80564_pyrogallol4171893Lack 5'-endK08358COG0437unknownunknown77.3788.8433.8
P80564_pyrogallol4584555CompleteK00184COG0437unknownunknown71.997.0935.62
P80564_pyrogallol4159593CompleteK00184COG0437unknownunknown72.2689.3330.23
P80564_pyrogallol4514546CompleteK08358COG0437unknownunknown74.0992.3431.43
P80564_pyrogallol4251120CompleteK00184COG0437ActinobacteriaEggerthella75.1885.0730.84
P80564_pyrogallol4250286CompleteK00184COG0437ActinobacteriaEggerthella75.1885.0730.37
P80564_pyrogallol4266902CompleteK00184COG0437Actinobacteriaunknown70.0780.031.0
P80564_pyrogallol4258359CompleteK00184COG0437Actinobacteriaunknown74.4584.5530.66
P80564_pyrogallol4538529CompleteK07307COG0437Actinobacteriaunknown75.1897.630.37
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderCoriobacteriales0.686.79e-2541.6e-251
familyCoriobacteriaceae0.686.79e-2541.6e-251
genusAdlercreutzia0.653.86e-2254.55e-223
speciesAdlercreutzia_equolifaciens0.653.86e-2254.55e-223
phylumActinobacteria0.5423.07e-1432.42e-141
classActinobacteria0.5423.07e-1432.42e-141
speciesRuminococcus_obeum0.5372.72e-1401.83e-138
speciesEubacterium_hallii0.5284.95e-1352.92e-133
genusGordonibacter0.5188.94e-1294.22e-127
speciesGordonibacter_pamelaeae0.5188.94e-1294.22e-127
genusDorea0.4953.04e-1161.3e-114
genusRuminococcus0.4858.15e-1113.21e-109
speciesRuminococcus_sp_5_1_39BFAA0.4781.33e-1074.83e-106
phylumBacteroidetes-0.4722.2e-1046.73e-103
classBacteroidia-0.4722.28e-1046.73e-103
orderBacteroidales-0.4722.28e-1046.73e-103
orderClostridiales0.4615.25e-991.38e-97
classClostridia0.4615.26e-991.38e-97
speciesDorea_formicigenerans0.4491.83e-934.55e-92
familyRuminococcaceae0.4484.76e-931.12e-91
speciesEggerthella_lenta0.4241.89e-824.25e-81
speciesDorea_longicatena0.4191.82e-803.9e-79
genusEggerthella0.4113.31e-776.79e-76
phylumFirmicutes0.4085.17e-761.02e-74
speciesCoprococcus_comes0.4012.7e-735.1e-72
orderBifidobacteriales0.4014.01e-737.01e-72
familyBifidobacteriaceae0.4014.01e-737.01e-72
genusBifidobacterium0.46.17e-731.04e-71
speciesCoprococcus_catus0.3971.23e-712e-70
genusCoprococcus0.3971.56e-712.45e-70
speciesClostridium_leptum0.3942.06e-703.14e-69
genusSubdoligranulum0.3861.78e-672.55e-66
speciesEggerthella_unclassified0.3861.78e-672.55e-66
speciesBifidobacterium_longum0.3852.98e-674.14e-66
genusCollinsella0.3855.45e-677.35e-66
speciesAnaerostipes_hadrus0.3824.87e-666.39e-65
speciesSubdoligranulum_unclassified0.3781.38e-641.76e-63
genusAnaerostipes0.3766.95e-648.63e-63
speciesRuminococcus_torques0.3656.65e-608.05e-59
genusBlautia0.3625.36e-596.32e-58
speciesCollinsella_aerofaciens0.362.49e-582.87e-57
speciesEubacterium_ramulus0.3542.87e-563.23e-55
familyBacteroidaceae-0.3497.93e-558.51e-54
genusBacteroides-0.3497.93e-558.51e-54
speciesStreptococcus_thermophilus0.3443.18e-533.34e-52
speciesLachnospiraceae_bacterium_5_1_63FAA0.3413.86e-523.96e-51
familyLachnospiraceae0.3292.4e-482.41e-47
speciesErysipelotrichaceae_bacterium_21_30.3244.9e-474.82e-46
genusLachnospiraceae_noname0.329.46e-469.11e-45
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3177.84e-457.4e-44
speciesRuminococcus_bromii0.3042.23e-412.06e-40
speciesHaemophilus_parainfluenzae-0.3043.34e-413.03e-40
genusHaemophilus-0.3034.38e-413.9e-40
orderPasteurellales-0.2994.77e-404.09e-39
familyPasteurellaceae-0.2994.77e-404.09e-39
familyActinomycetaceae0.2892.28e-371.92e-36
genusActinomyces0.2893.31e-372.74e-36
speciesBlautia_hydrogenotrophica0.2861.91e-361.55e-35
speciesBifidobacterium_adolescentis0.2831.09e-358.72e-35
genusHoldemania0.286.35e-355e-34
familyEubacteriaceae0.2764.28e-343.31e-33
genusEubacterium0.2765.85e-344.45e-33
phylumVerrucomicrobia0.2635.2e-313.61e-30
classVerrucomicrobiae0.2635.2e-313.61e-30
orderVerrucomicrobiales0.2635.2e-313.61e-30
familyVerrucomicrobiaceae0.2635.2e-313.61e-30
genusAkkermansia0.2635.2e-313.61e-30
speciesAkkermansia_muciniphila0.2635.2e-313.61e-30
orderActinomycetales0.2571.45e-299.92e-29
speciesErysipelotrichaceae_bacterium_6_1_450.2561.99e-291.34e-28
speciesPropionibacterium_freudenreichii0.2512.86e-281.9e-27
familySutterellaceae-0.2457.37e-274.83e-26
phylumFusobacteria-0.2422.99e-261.88e-25
classFusobacteriia-0.2422.99e-261.88e-25
orderFusobacteriales-0.2422.99e-261.88e-25
classBetaproteobacteria-0.2413.53e-262.19e-25
genusAnaerotruncus0.2413.6e-262.21e-25
speciesErysipelotrichaceae_bacterium_2_2_44A0.2414.27e-262.58e-25
genusPropionibacterium0.2391.11e-256.63e-25
genusPrevotella-0.2372.43e-251.43e-24
genusPseudoflavonifractor0.2363.82e-252.2e-24
speciesPseudoflavonifractor_capillosus0.2363.82e-252.2e-24
familyFusobacteriaceae-0.2364.06e-252.31e-24
speciesEubacterium_siraeum0.2364.55e-252.56e-24
classErysipelotrichia0.2357.52e-254.08e-24
orderErysipelotrichales0.2357.52e-254.08e-24
familyErysipelotrichaceae0.2357.52e-254.08e-24
genusFusobacterium-0.2358.68e-254.66e-24
orderBurkholderiales-0.2323.18e-241.69e-23
genusLactococcus0.2281.61e-238.44e-23
speciesSubdoligranulum_sp_4_3_54A2FAA0.2282.15e-231.12e-22
familyStreptococcaceae0.2272.75e-231.41e-22
speciesLachnospiraceae_bacterium_3_1_46FAA0.2258.17e-234.15e-22
speciesBacteroides_vulgatus-0.2231.77e-228.89e-22
speciesEubacterium_ventriosum0.2222.18e-221.08e-21
speciesBifidobacterium_animalis0.2213.43e-221.69e-21
genusStreptococcus0.2199.2e-224.48e-21
speciesPrevotella_stercorea-0.2199.99e-224.81e-21
speciesLactococcus_lactis0.2181.31e-216.25e-21
orderLactobacillales0.2181.49e-217.03e-21
speciesBacteroides_thetaiotaomicron-0.2181.81e-218.46e-21
classBacilli0.2172.12e-219.81e-21
genusParabacteroides-0.2112.61e-201.2e-19
speciesPrevotella_copri-0.214.31e-201.96e-19
classMethanobacteria0.2096.76e-202.98e-19
orderMethanobacteriales0.2096.76e-202.98e-19
familyMethanobacteriaceae0.2096.76e-202.98e-19
speciesLachnospiraceae_bacterium_1_1_57FAA0.2096.97e-203.05e-19
speciesFusobacterium_mortiferum-0.2081.02e-194.42e-19
genusMethanobrevibacter0.2062.1e-199.01e-19
phylumEuryarchaeota0.2062.3e-199.78e-19
speciesMethanobrevibacter_smithii0.2062.41e-191.02e-18
genusSolobacterium0.2052.96e-191.23e-18
speciesSolobacterium_moorei0.2052.96e-191.23e-18
speciesHoldemania_filiformis0.2044.98e-192.04e-18
speciesLachnospiraceae_bacterium_7_1_58FAA0.2037.76e-193.16e-18
speciesEubacterium_rectale0.2038.91e-193.59e-18
speciesPrevotella_buccae-0.2011.39e-185.56e-18
speciesAnaerotruncus_colihominis0.2011.64e-186.5e-18
speciesVeillonella_unclassified-0.22.54e-189.99e-18
genusVeillonella-0.1993.63e-181.42e-17
familyPrevotellaceae-0.1978.23e-183.18e-17
speciesBacteroides_ovatus-0.1979.29e-183.56e-17
speciesClostridium_bartlettii0.1961.32e-175.02e-17
speciesKlebsiella_pneumoniae-0.1951.64e-176.19e-17
phylumProteobacteria-0.1952.06e-177.72e-17
speciesLachnospiraceae_bacterium_5_1_57FAA0.1952.1e-177.8e-17
speciesBacteroides_xylanisolvens-0.1933.88e-171.43e-16
familyBacteroidales_noname0.1934.19e-171.51e-16
genusBacteroidales_noname0.1934.19e-171.51e-16
speciesBacteroidales_bacterium_ph80.1934.19e-171.51e-16
genusLeuconostoc0.1924.81e-171.72e-16
genusMegasphaera-0.1925.59e-171.98e-16
genusErysipelotrichaceae_noname0.1925.77e-172.03e-16
genusOlsenella0.191.2e-164.2e-16
speciesBacteroides_stercoris-0.1891.54e-165.34e-16
speciesAnaerotruncus_unclassified0.1891.6e-165.51e-16
speciesOlsenella_unclassified0.1891.63e-165.58e-16
familyPropionibacteriaceae0.1891.79e-166.07e-16
speciesVeillonella_dispar-0.1891.8e-166.07e-16
speciesVeillonella_parvula-0.1864.66e-161.56e-15
speciesMegasphaera_micronuciformis-0.1856.3e-162.09e-15
speciesLactobacillus_delbrueckii0.1849.99e-163.3e-15
genusRuminococcaceae_noname0.1841.02e-153.32e-15
speciesRuminococcaceae_bacterium_D160.1841.02e-153.32e-15
familyPeptostreptococcaceae0.1831.27e-154.11e-15
speciesHoldemania_unclassified0.1822.34e-157.51e-15
speciesVeillonella_atypica-0.1822.39e-157.62e-15
speciesStreptococcus_parasanguinis0.1787.79e-152.47e-14
genusDialister0.1789.67e-153.04e-14
genusPeptostreptococcaceae_noname0.1743.73e-141.17e-13
speciesCampylobacter_concisus-0.1744.1e-141.27e-13
speciesStreptococcus_sanguinis0.1734.7e-141.45e-13
speciesLactobacillus_casei_paracasei0.1691.67e-135.12e-13
genusKlebsiella-0.1665.21e-131.59e-12
speciesOscillibacter_unclassified0.1665.28e-131.6e-12
speciesRuminococcus_lactaris0.1649e-132.71e-12
familyEnterococcaceae0.1641.1e-123.29e-12
genusEnterococcus0.1631.45e-124.3e-12
speciesMethanobrevibacter_unclassified0.1621.68e-124.96e-12
speciesDialister_invisus0.1621.85e-125.42e-12
speciesAlistipes_sp_AP110.163.55e-121.03e-11
speciesLactobacillus_rhamnosus0.163.63e-121.05e-11
speciesRoseburia_hominis0.1587.38e-122.12e-11
familyOscillospiraceae0.1561.06e-113.01e-11
genusOscillibacter0.1561.06e-113.01e-11
speciesFusobacterium_varium-0.1561.33e-113.76e-11
familyClostridiales_Family_XI_Incertae_Sedis0.1551.64e-114.61e-11
speciesFusobacterium_ulcerans-0.1551.81e-115.06e-11
genusActinobacillus-0.1542.26e-116.24e-11
speciesActinobacillus_unclassified-0.1542.26e-116.24e-11
speciesStreptococcus_salivarius0.1533.35e-119.19e-11
speciesBifidobacterium_catenulatum0.1523.84e-111.05e-10
orderBacillales0.1523.87e-111.05e-10
speciesBifidobacterium_bifidum0.1523.97e-111.07e-10
speciesEnterococcus_faecium0.1514.65e-111.25e-10
speciesMegamonas_unclassified-0.1481.21e-103.23e-10
genusBarnesiella0.1481.27e-103.35e-10
speciesBarnesiella_intestinihominis0.1481.27e-103.35e-10
genusMegamonas-0.1471.49e-103.91e-10
familyBacillales_noname0.1471.62e-104.2e-10
genusGemella0.1471.62e-104.2e-10
speciesRuminococcus_sp_JC3040.1462.42e-106.24e-10
speciesBacteroides_plebeius-0.1452.94e-107.54e-10
speciesLachnospiraceae_bacterium_1_4_56FAA0.1453.12e-107.96e-10
familyPorphyromonadaceae-0.1444.01e-101.02e-09
genusCoriobacteriaceae_noname0.1435.05e-101.27e-09
speciesBacteroides_fragilis-0.1427.23e-101.82e-09
speciesEggerthella_sp_1_3_56FAA0.1417.99e-102e-09
speciesClostridium_nexile-0.1418.12e-102.02e-09
speciesCoriobacteriaceae_bacterium_phI0.1419.59e-102.37e-09
genusAggregatibacter-0.141.05e-092.58e-09
genusParvimonas0.1391.53e-093.74e-09
speciesParvimonas_unclassified0.1391.57e-093.82e-09
speciesHaemophilus_paraphrohaemolyticus-0.1391.67e-094.04e-09
familyLeuconostocaceae0.1372.39e-095.76e-09
classGammaproteobacteria-0.1372.89e-096.92e-09
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.131.5e-083.58e-08
speciesAggregatibacter_segnis-0.1292.15e-085.1e-08
speciesLactococcus_phage_P6800.1282.88e-086.8e-08
speciesLactobacillus_plantarum0.1273.25e-087.63e-08
familySiphoviridae0.1274.03e-089.42e-08
speciesTuricibacter_unclassified0.1264.42e-081.03e-07
speciesEubacterium_limosum0.1264.67e-081.08e-07
speciesBlautia_producta0.1264.76e-081.1e-07
speciesClostridium_asparagiforme0.1247.54e-081.72e-07
speciesEubacterium_sp_3_1_310.1247.55e-081.72e-07
genusSutterellaceae_unclassified-0.1248.04e-081.82e-07
speciesClostridium_perfringens-0.1239.61e-082.17e-07
genusTuricibacter0.1221.34e-073.01e-07
speciesRuminococcus_callidus0.1211.41e-073.15e-07
familyLactobacillaceae0.121.8e-074.01e-07
speciesPeptostreptococcus_anaerobius0.1192.2e-074.88e-07
speciesTuricibacter_sanguinis0.1192.7e-075.96e-07
speciesCoprococcus_sp_ART55_10.1173.56e-077.82e-07
speciesMegamonas_rupellensis-0.1173.63e-077.93e-07
speciesParabacteroides_unclassified-0.1155.63e-071.22e-06
speciesEubacterium_cylindroides0.1155.94e-071.29e-06
genusSiphoviridae_noname0.1156.35e-071.37e-06
genusLactobacillus0.1146.9e-071.48e-06
classEpsilonproteobacteria-0.1147.48e-071.59e-06
orderCampylobacterales-0.1147.48e-071.59e-06
phylumViruses_noname0.1148.11e-071.71e-06
classViruses_noname0.1148.11e-071.71e-06
speciesClostridium_spiroforme0.1139.62e-072.02e-06
genusButyrivibrio0.1131.06e-062.21e-06
speciesMegamonas_hypermegale-0.1121.11e-062.31e-06
genusCampylobacter-0.1111.49e-063.08e-06
genusC2likevirus0.1111.65e-063.4e-06
genusMethanosphaera0.1092.16e-064.41e-06
speciesMethanosphaera_stadtmanae0.1092.16e-064.41e-06
speciesC2likevirus_unclassified0.1092.18e-064.44e-06
familyCampylobacteraceae-0.1082.76e-065.59e-06
speciesFusobacterium_nucleatum-0.1082.86e-065.77e-06
speciesLactobacillus_salivarius-0.1083.05e-066.13e-06
speciesAlistipes_onderdonkii0.1073.33e-066.66e-06
speciesOdoribacter_laneus0.1073.41e-066.79e-06
classNegativicutes-0.1064.7e-069.28e-06
orderSelenomonadales-0.1064.7e-069.28e-06
speciesMegasphaera_unclassified-0.1055.21e-061.02e-05
genusRothia0.1046.13e-061.2e-05
familyMicrococcaceae0.1046.85e-061.34e-05
speciesPorphyromonas_asaccharolytica0.1037.96e-061.55e-05
speciesParabacteroides_distasonis-0.1021.09e-052.11e-05
speciesLactobacillus_acidophilus0.1011.11e-052.14e-05
speciesStreptococcus_australis0.0991.67e-053.2e-05
genusPorphyromonas0.0991.73e-053.31e-05
speciesLactobacillus_mucosae-0.0991.86e-053.54e-05
speciesRuminococcus_gnavus-0.0991.91e-053.62e-05
orderCaudovirales0.0982.3e-054.34e-05
speciesBacteroides_massiliensis-0.0963.11e-055.85e-05
speciesErysipelotrichaceae_bacterium_3_1_530.0963.25e-056.09e-05
speciesMegamonas_funiformis-0.0944.36e-058.13e-05
speciesAlistipes_senegalensis0.0944.95e-059.2e-05
speciesRothia_mucilaginosa0.0945.08e-059.4e-05
speciesStreptococcus_vestibularis0.0926.5e-050.00012
speciesButyrivibrio_unclassified0.0927.19e-050.000132
familyVeillonellaceae-0.0927.32e-050.000134
speciesBacteroides_nordii-0.0917.69e-050.00014
speciesLactobacillus_gasseri0.0890.0001070.000194
genusPeptoniphilus0.0890.0001220.000221
speciesClostridium_sp_L2_500.0890.0001230.000222
speciesClostridium_hathewayi0.0880.0001290.000232
genusPantoea-0.0880.0001380.000246
speciesPantoea_unclassified-0.0880.0001380.000246
orderPseudomonadales0.0870.0001520.00027
speciesBacteroides_coprocola-0.0870.0001550.000274
speciesPeptostreptococcaceae_noname_unclassified0.0850.0002420.000426
speciesClostridium_sp_KLE_17550.0850.0002470.000433
speciesStreptococcus_mutans0.0840.0002540.000444
speciesEnterococcus_faecalis0.0830.0003060.000533
speciesAlistipes_indistinctus0.0830.0003180.000552
genusEnterobacter-0.0820.0003610.000622
speciesOdoribacter_splanchnicus-0.0820.0003610.000622
speciesEnterobacter_cloacae-0.0810.0004440.000762
genusClostridiaceae_noname0.0810.0004490.000765
speciesClostridiaceae_bacterium_JC1180.0810.0004490.000765
familyClostridiaceae0.0810.0004740.000805
speciesCoprobacillus_sp_D60.080.0005160.000873
genusFaecalibacterium0.0790.0005860.000981
speciesHaemophilus_sputorum-0.0790.0005860.000981
speciesFaecalibacterium_prausnitzii0.0790.0005860.000981
genusClostridium0.0790.0006150.00103
speciesMitsuokella_unclassified0.0790.0006310.00105
speciesParabacteroides_merdae-0.0790.000640.00106
genusCoprobacillus0.0760.0009440.00156
genusMitsuokella0.0760.0009550.00157
familyStaphylococcaceae0.0760.000960.00157
genusButyricimonas-0.0760.0009750.00159
speciesButyricimonas_synergistica-0.0760.0009750.00159
speciesRoseburia_inulinivorans-0.0760.001030.00167
speciesBacteroides_caccae-0.0740.001320.00213
genusStaphylococcus0.0730.001530.00246
speciesDorea_unclassified-0.0730.001610.00258
speciesPorphyromonas_uenonis0.0730.001640.00262
genusPeptostreptococcus0.0720.001740.00277
speciesHoldemania_sp_AP20.0720.001760.0028
speciesStreptococcus_gordonii0.0720.001880.00298
speciesBacteroides_oleiciplenus-0.0710.002120.00335
speciesStreptococcus_anginosus0.0710.002140.00337
speciesEnterobacter_aerogenes-0.070.002590.00406
genusOdoribacter-0.070.002630.00411
speciesStreptococcus_pasteurianus-0.0690.002790.00435
orderEnterobacteriales-0.0690.002890.00447
familyEnterobacteriaceae-0.0690.002890.00447
genusSutterella-0.0670.00360.00555
speciesBacteroides_pectinophilus0.0670.003890.00598
speciesRuminococcus_champanellensis0.0670.003920.00601
familyOxalobacteraceae0.0670.003990.00609
speciesBacteroides_faecis-0.0660.004020.00612
familyClostridiales_noname0.0660.004310.00654
familyMyoviridae-0.0640.005570.00843
speciesButyrivibrio_crossotus0.0640.00560.00844
speciesBacteroides_dorei-0.0640.005750.00864
orderAeromonadales-0.0630.006050.00907
speciesBilophila_wadsworthia0.0620.006960.0104
genusOxalobacter0.0620.007190.0107
speciesOxalobacter_formigenes0.0620.007190.0107
genusParasutterella-0.0620.007520.0111
speciesParasutterella_excrementihominis-0.0620.007520.0111
speciesCoprobacillus_sp_29_10.0610.007960.0117
speciesLactobacillus_sanfranciscensis0.060.009010.0132
orderViruses_noname0.0590.01070.0156
speciesEscherichia_coli-0.0580.01160.0169
speciesSutterella_wadsworthensis-0.0580.0120.0174
genusCoprobacter0.0580.01260.0182
speciesCoprobacter_fastidiosus0.0580.01260.0182
speciesLactococcus_phage_jm20.0570.0130.0187
genusEscherichia-0.0570.01410.0202
speciesBacteroides_intestinalis-0.0560.01510.0216
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0550.01810.0258
speciesBifidobacterium_dentium0.0540.01860.0264
speciesDesulfovibrio_desulfuricans0.0540.020.0283
speciesClostridium_citroniae0.0530.02120.03
speciesOscillibacter_sp_KLE_1728-0.0530.02310.0325
classDeltaproteobacteria0.0520.0240.0335
orderDesulfovibrionales0.0520.0240.0335
familyDesulfovibrionaceae0.0520.0240.0335
speciesLactococcus_garvieae0.0510.02620.0365
speciesGemella_morbillorum0.0510.02640.0366
speciesEubacterium_biforme0.0510.02890.04
speciesRoseburia_unclassified0.0490.03390.0468
speciesDialister_succinatiphilus0.0490.03530.0486
speciesMegasphaera_elsdenii-0.0490.03550.0487
speciesLactococcus_phage_phi70.0480.0360.0493
speciesLactococcus_phage_bIL670.0480.03980.0543
speciesBacteroides_finegoldii-0.0470.04380.0596
genusMorganella-0.0470.04430.0599
speciesMorganella_morganii-0.0470.04430.0599
speciesClostridium_ramosum0.0460.04630.0624
speciesParabacteroides_sp_20_30.0460.04820.0648
genusBilophila0.0460.04840.0649
speciesBacteroides_coprophilus-0.0450.05090.0681
speciesCoprobacillus_unclassified0.0450.0520.0693
genusProteus-0.0450.05360.0713
speciesCoprococcus_eutactus0.0440.0550.0729
familyBurkholderiales_noname-0.0440.0560.074
speciesAlistipes_unclassified0.0440.05750.0758
speciesBilophila_unclassified0.0440.05770.0758
familyRikenellaceae0.0440.0580.0758
genusAlistipes0.0440.0580.0758
speciesStreptococcus_phage_Sfi210.0440.05930.0773
genusRoseburia-0.0430.06510.0846
genusBurkholderiales_noname-0.0420.07070.0914
speciesBurkholderiales_bacterium_1_1_47-0.0420.07070.0914
genusDesulfovibrio0.0420.07120.0918
speciesOscillibacter_sp_KLE_17450.0410.07730.0994
speciesAcidaminococcus_unclassified0.040.08260.106
speciesLachnospiraceae_bacterium_2_1_58FAA0.040.08760.112
speciesMitsuokella_multacida-0.0370.1110.141
speciesClostridium_clostridioforme0.0370.1110.141
genusMyoviridae_noname-0.0360.1150.146
speciesRoseburia_intestinalis0.0360.1150.146
speciesLactobacillus_crispatus-0.0360.1240.156
genusSuccinatimonas-0.0340.1390.174
speciesSuccinatimonas_hippei-0.0340.1390.174
speciesSutterella_parvirubra-0.0330.1490.186
speciesParaprevotella_xylaniphila-0.0330.1490.186
genusTunalikevirus-0.0330.1510.188
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0330.1520.189
speciesLactobacillus_ruminis-0.0330.1560.193
speciesBacteroides_uniformis-0.0320.1620.2
speciesPrevotella_bivia0.0320.1680.207
speciesClostridium_symbiosum0.0310.1750.215
speciesStreptococcus_infantarius-0.0310.1860.228
speciesPeptostreptococcus_stomatis0.030.1880.23
familySuccinivibrionaceae-0.030.1930.235
speciesStreptococcus_mitis_oralis_pneumoniae0.0290.2120.258
phylumSynergistetes-0.0290.2160.26
classSynergistia-0.0290.2160.26
orderSynergistales-0.0290.2160.26
familySynergistaceae-0.0290.2160.26
speciesBacteroides_barnesiae0.0280.2210.265
speciesBacteroides_sp_3_1_19-0.0280.2260.271
speciesAcidaminococcus_fermentans-0.0280.2310.276
speciesDesulfovibrio_piger-0.0270.2360.281
speciesStreptococcus_lutetiensis-0.0270.2380.283
speciesKlebsiella_sp_MS_92_3-0.0270.2410.286
speciesProteus_mirabilis-0.0260.2560.302
speciesClostridium_sp_ATCC_BAA_442-0.0260.2560.302
speciesKlebsiella_oxytoca0.0260.2610.307
genusPyramidobacter-0.0260.2680.314
speciesPyramidobacter_piscolens-0.0260.2680.314
speciesKlebsiella_phage_KP36-0.0250.2720.317
speciesBifidobacterium_pseudocatenulatum0.0250.2720.317
speciesAcidaminococcus_intestini-0.0250.2790.324
speciesBifidobacterium_breve-0.0240.2970.344
genusClostridiales_noname0.0240.310.358
speciesCitrobacter_freundii-0.0240.310.358
speciesBacteroides_sp_2_1_22-0.0230.3110.358
speciesCollinsella_tanakaei-0.0230.320.367
speciesBacteroides_salyersiae-0.0230.3260.373
speciesBacteroides_sp_1_1_6-0.0230.3270.374
speciesCitrobacter_unclassified-0.0230.3290.375
genusAcidaminococcus0.0220.3310.376
genusParaprevotella-0.0220.3370.382
genusPhascolarctobacterium-0.0220.3480.393
speciesPhascolarctobacterium_succinatutens-0.0220.3480.393
speciesWeissella_cibaria0.0210.3630.408
speciesEubacterium_dolichum0.0210.3630.408
speciesAlistipes_putredinis0.0210.3660.41
genusCitrobacter-0.0210.3670.41
genusLambdalikevirus0.020.3790.422
speciesParaprevotella_unclassified-0.020.3790.422
genusSlackia0.020.3850.427
speciesOdoribacter_unclassified0.020.3850.427
speciesAlistipes_finegoldii0.020.3880.429
speciesLactobacillus_reuteri0.0190.4210.464
genusAcidaminococcaceae_unclassified0.0180.4250.468
speciesLeuconostoc_lactis0.0180.4410.484
speciesBacteroides_eggerthii0.0170.4550.498
speciesBacteroides_fluxus0.0170.4580.5
speciesWeissella_confusa-0.0160.4920.536
speciesCollinsella_intestinalis-0.0160.4950.538
speciesSlackia_piriformis0.0150.510.553
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0150.5230.566
speciesParabacteroides_goldsteinii-0.0130.580.626
speciesKlebsiella_unclassified-0.0110.630.679
speciesAnaerostipes_unclassified-0.010.6580.707
speciesAlistipes_shahii0.010.6590.707
speciesBacteroides_cellulosilyticus0.010.6710.718
speciesParaprevotella_clara-0.010.6740.72
speciesEscherichia_unclassified0.0090.6920.737
speciesCollinsella_unclassified-0.0090.7130.758
speciesLactobacillus_amylovorus-0.0080.7170.761
speciesAlistipes_sp_HGB50.0080.7270.769
speciesBacteroides_clarus-0.0080.7390.78
speciesBacteroides_salanitronis-0.0070.7470.785
speciesClostridiales_bacterium_1_7_47FAA-0.0070.7470.785
speciesLactobacillus_oris-0.0070.7720.81
speciesLactobacillus_fermentum0.0060.7970.834
speciesParabacteroides_johnsonii0.0060.8020.837
familyAcidaminococcaceae-0.0060.8040.838
speciesLactobacillus_vaginalis0.0050.8240.857
speciesBifidobacterium_angulatum0.0050.8420.873
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0050.8460.876
speciesClostridium_bolteae0.0040.8670.895
speciesEubacterium_eligens0.0030.8830.91
genusFlavonifractor-0.0020.9230.946
speciesFlavonifractor_plautii-0.0020.9230.946
speciesBacteroides_sp_4_3_47FAA-0.0020.9270.946
genusCatenibacterium0.0020.9280.946
speciesCatenibacterium_mitsuokai0.0020.9280.946
speciesEnterobacteria_phage_HK5440.0020.9420.955
speciesParabacteroides_sp_D13-0.0020.9430.955
genusButyricicoccus0.0020.9450.955
speciesButyricicoccus_pullicaecorum0.0020.9450.955
speciesLactococcus_phage_936_sensu_lato-0.0020.9480.956
familyPodoviridae-0.0010.9680.974
familyViruses_noname0.0010.9820.984
genusViruses_noname0.0010.9820.984
genusWeissella0.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0003091262990060.0005834840149030.000246420757786595119.9906
Crohns diseaseSpain17660.00101710478530.003646691168530.00104504784817421414.0116
Type II diabetesChina1831850.001220024322060.0007758180436330.0101775550264372712.317
Type II diabetesSweden53920.005201255995750.0079475690260.01611627276486102.0657
Rheumatoid arthritisChina127980.003357228582640.002407431593870.227299522685983632.8009
Colorectal cancerAustria64350.01410952840260.01907379092430.4313818776061574053.2548
Type II diabetesDenmark752770.001287991648580.001212936972420.4463234765941924963.097
Ulcerative colitisSpain78660.003647011607070.003646691168530.5643459790422069368.2622
ObesityDenmark1691230.000995832204890.001513291620510.9323532001612901095.3931
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382