MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-11-06 23:37:40 PST
Job id & description: 1526, Alcaligenes
Query type: dna
Count queries & homologs: 1, 100
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
D88008.1905339unknownunknownProteobacteriaSutterella100.096.3290.02
D88008.1896243unknownunknownProteobacteriaunknown100.096.3487.9
D88008.1877836unknownunknownProteobacteriaProteus100.095.6582.68
D88008.1856178unknownunknownProteobacteriaEnterobacter100.094.7382.4
D88008.1896267unknownunknownProteobacteriaAggregatibacter100.096.3482.28
D88008.1843984unknownunknownProteobacteriaEscherichia100.094.8981.65
D88008.11093628unknownunknownProteobacteriaProvidencia93.297.0382.65
D88008.1860634unknownunknownProteobacteriaHaemophilus100.094.7881.51
D88008.1933546unknownunknownProteobacteriaSuccinatimonas100.096.2881.26
D88008.1882598unknownunknownProteobacteriaDesulfovibrio85.7182.3180.0
D88008.1909972unknownunknownFirmicutesunknown85.7881.5780.05
D88008.1919228unknownunknownFirmicutesAnaerotruncus85.7881.4979.95
D88008.1887138unknownunknownFirmicutesRoseburia85.7880.8579.59
D88008.1909876unknownunknownFirmicutesRuminococcus85.7881.5379.5
D88008.1905337unknownunknownFirmicutesClostridium85.7881.5579.55
D88008.1905338unknownunknownFirmicutesAnaerostipes85.7881.4879.42
D88008.1882548unknownunknownProteobacteriaBilophila85.7182.3379.22
D88008.1914680unknownunknownFirmicutesClostridium85.7881.4679.39
D88008.1909967unknownunknownFirmicutesunknown85.7881.6479.42
D88008.1909790unknownunknownFirmicutesunknown85.7881.5379.49
D88008.1952897unknownunknownFirmicutesRuminococcus85.7882.4679.34
D88008.1905340unknownunknownFirmicutesBlautia85.8581.679.14
D88008.11076271unknownunknownFirmicutesEubacterium85.7887.1579.16
D88008.1868799unknownunknownFirmicutesStreptococcus85.7181.6578.91
D88008.1864662unknownunknownFirmicutesLactobacillus85.7181.578.75
D88008.1836310unknownunknownFirmicutesLactobacillus79.874.9879.65
D88008.1948040unknownunknownFirmicutesEubacterium85.7882.4379.03
D88008.1856177unknownunknownFirmicutesLactococcus85.7181.1778.75
D88008.1909968unknownunknownFirmicutesunknown85.7881.6478.84
D88008.1923885unknownunknownFirmicutesButyrivibrio85.7882.0678.86
D88008.1868909unknownunknownFirmicutesGemella85.7182.1578.6
D88008.1909821unknownunknownFirmicutesEubacterium85.8581.5978.88
D88008.1741096unknownunknownFirmicutesLactobacillus85.7176.6878.52
D88008.1720465unknownunknownFusobacteriaFusobacterium85.7174.3978.81
D88008.1909969unknownunknownFirmicutesDorea85.7881.6378.75
D88008.1919126unknownunknownFirmicutesunknown85.7182.8478.54
D88008.1909970unknownunknownFirmicutesClostridium85.7881.6378.73
D88008.1836208unknownunknownFirmicutesLactobacillus85.7180.7378.51
D88008.1821203unknownunknownFirmicutesWeissella85.7179.878.33
D88008.1882599unknownunknownFirmicutesGranulicatella85.7182.1878.43
D88008.11477250unknownunknownFirmicutesHoldemania83.8897.5478.69
D88008.1882554unknownunknownFirmicutesLeuconostoc85.7182.2678.35
D88008.1962644unknownunknownFirmicutesunknown85.7883.4778.63
D88008.1909879unknownunknownFirmicutesunknown85.7881.6678.58
D88008.1943064unknownunknownActinobacteriaAtopobium85.6582.478.33
D88008.1928676unknownunknownFirmicutesAnaerofustis85.7181.4978.44
D88008.1860628unknownunknownFirmicutesLactobacillus85.7181.3478.09
D88008.1832524unknownunknownFirmicutesLactobacillus85.7180.2578.19
D88008.1943183unknownunknownFirmicutesFaecalibacterium98.7895.0677.09
D88008.1900735unknownunknownFirmicutesunknown85.7181.9378.38
D88008.1864729unknownunknownFirmicutesEnterococcus85.7181.6778.23
D88008.1948164unknownunknownLentisphaeraeVictivallis85.7183.0978.39
D88008.1909964unknownunknownFirmicutesEubacterium85.7881.5178.38
D88008.1873211unknownunknownFirmicutesAcidaminococcus85.7882.1478.07
D88008.1896266unknownunknownFirmicutesunknown85.7182.278.23
D88008.1919230unknownunknownFirmicutesSolobacterium85.7182.3578.12
D88008.1844088unknownunknownFirmicutesLactobacillus85.7180.8977.94
D88008.1957732unknownunknownFirmicutesClostridium85.7883.178.19
D88008.1909973unknownunknownFirmicutesClostridium85.7881.6378.13
D88008.1860637unknownunknownFirmicutesStreptococcus85.7181.5177.96
D88008.1856179unknownunknownFirmicutesStreptococcus85.7181.2977.96
D88008.1824698unknownunknownFirmicutesLactobacillus85.7180.1477.81
D88008.1948166unknownunknownFusobacteriaFusobacterium85.7183.0978.06
D88008.1643255unknownunknownFirmicutesunknown85.7871.0678.14
D88008.1856145unknownunknownFirmicutesDialister85.7881.5777.51
D88008.11047730unknownunknownFirmicutesOribacterium85.7885.7577.68
D88008.1747640unknownunknownFirmicutesPhascolarctobacterium85.7877.0477.29
D88008.1948025unknownunknownActinobacteriaEggerthella79.3276.0977.98
D88008.11081828unknownunknownActinobacteriaActinomyces78.8482.1877.75
D88008.1860636unknownunknownFirmicutesMegasphaera85.7881.7776.81
D88008.1864728unknownunknownFirmicutesMitsuokella85.7881.7976.76
D88008.11013960unknownunknownProteobacteriaCampylobacter80.8880.4577.53
D88008.11125287unknownunknownFirmicutesunknown79.3982.5877.71
D88008.1886983unknownunknownActinobacteriaBifidobacterium81.5677.677.36
D88008.1882600unknownunknownActinobacteriaBifidobacterium80.8276.5177.41
D88008.1860635unknownunknownFirmicutesVeillonella79.3975.7277.38
D88008.1864726unknownunknownActinobacteriaBifidobacterium80.6176.5277.28
D88008.11721090unknownunknownFirmicutesCoprobacillus78.597.3777.54
D88008.1864727unknownunknownFirmicutesMegasphaera85.7882.076.52
D88008.1919121unknownunknownBacteroidetesAlistipes79.7377.177.21
D88008.11041798unknownunknownFirmicutesAnaerococcus79.8679.7577.19
D88008.11186048unknownunknownFirmicutesPeptoniphilus78.4482.1476.88
D88008.1923883unknownunknownProteobacteriaCampylobacter80.276.9776.62
D88008.1948165unknownunknownActinobacteriaCollinsella76.3973.5376.81
D88008.1933570unknownunknownVerrucomicrobiaAkkermansia85.7182.8675.8
D88008.1919229unknownunknownBacteroidetesBacteroides79.7377.275.23
D88008.1914677unknownunknownBacteroidetesBacteroides79.4676.6674.79
D88008.1882601unknownunknownBacteroidetesBacteroides81.2277.4974.42
D88008.1919231unknownunknownBacteroidetesBacteroides79.4676.8774.66
D88008.1923767unknownunknownBacteroidetesOdoribacter79.5277.0574.44
D88008.1909971unknownunknownBacteroidetesBacteroides79.4676.7674.18
D88008.1909965unknownunknownBacteroidetesBacteroides79.7376.9174.08
D88008.1919154unknownunknownBacteroidetesBacteroides79.4676.7774.1
D88008.1914679unknownunknownBacteroidetesBacteroides79.4676.7273.86
D88008.1923884unknownunknownBacteroidetesBacteroides79.4676.9773.67
D88008.1909831unknownunknownBacteroidetesBacteroides79.4676.6673.63
D88008.1919127unknownunknownBacteroidetesBacteroides79.4676.7773.61
D88008.1914678unknownunknownBacteroidetesParaprevotella79.4676.7373.51
D88008.1914676unknownunknownBacteroidetesPorphyromonas80.077.4673.24
D88008.1983224unknownunknownBacteroidetesPrevotella79.5279.1273.18
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.5116.05e-1252.86e-122
speciesSubdoligranulum_unclassified-0.4284.21e-849.94e-82
genusSubdoligranulum-0.4256.74e-831.06e-80
familyPrevotellaceae-0.4241.95e-822.3e-80
speciesAnaerotruncus_unclassified-0.4162.69e-792.54e-77
speciesAlistipes_senegalensis-0.418.22e-776.47e-75
speciesEubacterium_siraeum-0.3942.06e-701.39e-68
genusEggerthella0.3861.62e-679.56e-66
speciesEggerthella_unclassified0.3841.09e-665.72e-65
speciesCoprobacillus_unclassified0.3819.64e-664.55e-64
classMethanobacteria-0.3765.52e-642e-62
orderMethanobacteriales-0.3765.52e-642e-62
familyMethanobacteriaceae-0.3765.52e-642e-62
speciesMethanobrevibacter_smithii-0.3768.33e-642.81e-62
phylumEuryarchaeota-0.3722.02e-626.36e-61
genusMethanobrevibacter-0.371.1e-613.25e-60
familyBacteroidaceae0.3594.36e-581.14e-56
genusBacteroides0.3594.36e-581.14e-56
genusButyrivibrio-0.3564.8e-571.19e-55
genusCoprobacillus0.3536.71e-561.58e-54
speciesPrevotella_copri-0.3451.8e-534.05e-52
genusAnaerotruncus-0.3383.39e-517.27e-50
genusPrevotella-0.3383.57e-517.33e-50
genusBarnesiella-0.3361.08e-502.04e-49
speciesBarnesiella_intestinihominis-0.3361.08e-502.04e-49
familyBacteroidales_noname-0.3339.83e-501.66e-48
genusBacteroidales_noname-0.3339.83e-501.66e-48
speciesBacteroidales_bacterium_ph8-0.3339.83e-501.66e-48
speciesClostridium_bolteae0.3322.68e-494.36e-48
speciesClostridium_ramosum0.3244.91e-477.73e-46
genusOdoribacter-0.326.22e-469.47e-45
genusCoprococcus-0.321.09e-451.61e-44
speciesAlistipes_shahii-0.3011.63e-402.33e-39
speciesAlistipes_indistinctus-0.2958.36e-391.16e-37
speciesEubacterium_biforme-0.2932.84e-383.83e-37
speciesRoseburia_hominis-0.2925.53e-387.25e-37
speciesOdoribacter_splanchnicus-0.2916.37e-388.13e-37
familyFusobacteriaceae0.2892.78e-373.45e-36
speciesMitsuokella_unclassified-0.2884.46e-375.4e-36
phylumFusobacteria0.2885.48e-376.16e-36
classFusobacteriia0.2885.48e-376.16e-36
orderFusobacteriales0.2885.48e-376.16e-36
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2878.73e-379.58e-36
speciesCoprococcus_catus-0.2861.23e-361.32e-35
genusFusobacterium0.2853.19e-363.27e-35
genusOxalobacter-0.2853.26e-363.27e-35
speciesOxalobacter_formigenes-0.2853.26e-363.27e-35
familyOxalobacteraceae-0.2839.34e-369.18e-35
genusMitsuokella-0.2821.34e-351.29e-34
genusDesulfovibrio-0.2812.69e-352.54e-34
genusPseudoflavonifractor-0.2813.51e-353.19e-34
speciesPseudoflavonifractor_capillosus-0.2813.51e-353.19e-34
speciesLachnospiraceae_bacterium_1_4_56FAA0.2781.7e-341.51e-33
speciesParaprevotella_xylaniphila-0.2772.86e-342.5e-33
speciesCoprococcus_sp_ART55_1-0.2692.38e-322.04e-31
genusParaprevotella-0.2627.91e-316.67e-30
genusCoprobacter-0.2621.09e-308.87e-30
speciesCoprobacter_fastidiosus-0.2621.09e-308.87e-30
speciesParaprevotella_unclassified-0.2611.38e-301.1e-29
speciesClostridium_nexile0.262.54e-302e-29
speciesMethanobrevibacter_unclassified-0.2586.75e-305.22e-29
speciesClostridium_symbiosum0.2586.98e-305.31e-29
speciesButyrivibrio_crossotus-0.2571.23e-299.22e-29
familyRikenellaceae-0.2571.64e-291.19e-28
genusAlistipes-0.2571.64e-291.19e-28
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2545.73e-294.1e-28
phylumVerrucomicrobia-0.2521.64e-281.08e-27
classVerrucomicrobiae-0.2521.64e-281.08e-27
orderVerrucomicrobiales-0.2521.64e-281.08e-27
familyVerrucomicrobiaceae-0.2521.64e-281.08e-27
genusAkkermansia-0.2521.64e-281.08e-27
speciesAkkermansia_muciniphila-0.2521.64e-281.08e-27
speciesParaprevotella_clara-0.2512.29e-281.48e-27
speciesAlistipes_putredinis-0.2499.51e-286.07e-27
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2471.92e-271.21e-26
speciesRuminococcus_callidus-0.2472.62e-271.63e-26
speciesClostridiales_bacterium_1_7_47FAA0.2431.37e-268.4e-26
genusCatenibacterium-0.2422.59e-261.55e-25
speciesCatenibacterium_mitsuokai-0.2422.59e-261.55e-25
speciesEubacterium_eligens-0.2422.65e-261.56e-25
speciesDorea_longicatena-0.246.54e-263.81e-25
speciesBlautia_producta0.2382.12e-251.22e-24
speciesLachnospiraceae_bacterium_2_1_58FAA0.2373.05e-251.73e-24
speciesEggerthella_lenta0.2356.33e-253.56e-24
speciesAlistipes_finegoldii-0.2322.81e-241.56e-23
speciesBacteroides_fragilis0.238.27e-244.54e-23
speciesLachnospiraceae_bacterium_6_1_63FAA0.2281.55e-238.33e-23
genusFlavonifractor0.2281.57e-238.33e-23
speciesFlavonifractor_plautii0.2281.57e-238.33e-23
speciesClostridium_sp_L2_50-0.2282.06e-231.08e-22
classGammaproteobacteria0.2241.05e-225.45e-22
speciesDesulfovibrio_desulfuricans-0.2232.07e-221.06e-21
genusPhascolarctobacterium-0.2222.72e-221.37e-21
speciesPhascolarctobacterium_succinatutens-0.2222.72e-221.37e-21
familyRuminococcaceae-0.2213.43e-221.7e-21
speciesClostridium_clostridioforme0.2213.7e-221.82e-21
orderEnterobacteriales0.2214.21e-222.03e-21
familyEnterobacteriaceae0.2214.21e-222.03e-21
speciesOlsenella_unclassified-0.2191.13e-215.39e-21
speciesStreptococcus_mitis_oralis_pneumoniae0.2191.18e-215.57e-21
speciesCoprococcus_comes-0.2181.39e-216.5e-21
speciesFusobacterium_ulcerans0.2181.58e-217.31e-21
speciesDesulfovibrio_piger-0.2172.7e-211.24e-20
familyAcidaminococcaceae-0.2154.64e-212.11e-20
speciesBifidobacterium_adolescentis-0.2131.26e-205.66e-20
genusBlautia0.2121.85e-208.24e-20
speciesCoprococcus_eutactus-0.2122.06e-209.09e-20
speciesClostridium_hathewayi0.2122.09e-209.13e-20
speciesCollinsella_aerofaciens-0.214.75e-202.02e-19
genusRuminococcaceae_noname-0.214.76e-202.02e-19
speciesRuminococcaceae_bacterium_D16-0.214.76e-202.02e-19
speciesSutterella_wadsworthensis-0.2071.44e-196.07e-19
genusEscherichia0.2053.33e-191.39e-18
speciesStreptococcus_sanguinis0.2045.73e-192.37e-18
speciesButyrivibrio_unclassified-0.2021.35e-185.54e-18
familyBacillales_noname0.1993.37e-181.36e-17
genusGemella0.1993.37e-181.36e-17
speciesLactobacillus_ruminis-0.1993.66e-181.46e-17
speciesEscherichia_coli0.1985.06e-182.01e-17
genusSutterella-0.1951.64e-176.45e-17
speciesParabacteroides_merdae-0.1933.7e-171.44e-16
phylumProteobacteria0.191.11e-164.26e-16
speciesAnaerostipes_unclassified0.191.11e-164.26e-16
genusActinomyces0.1891.62e-166.17e-16
familyActinomycetaceae0.1891.88e-167.1e-16
speciesFusobacterium_varium0.1882.93e-161.1e-15
speciesClostridium_citroniae0.1872.98e-161.11e-15
speciesClostridium_leptum-0.1873.02e-161.11e-15
genusCollinsella-0.1873.75e-161.37e-15
speciesRuminococcus_champanellensis-0.1856.43e-162.33e-15
orderBacillales0.1831.4e-155.04e-15
genusSolobacterium0.1789.86e-153.5e-14
speciesSolobacterium_moorei0.1789.86e-153.5e-14
genusOlsenella-0.1771.1e-143.87e-14
speciesMegasphaera_micronuciformis0.1771.14e-143.99e-14
speciesRuminococcus_lactaris-0.1761.58e-145.48e-14
genusDorea-0.1761.78e-146.13e-14
speciesEubacterium_ventriosum-0.1761.86e-146.36e-14
speciesEubacterium_ramulus-0.1761.92e-146.52e-14
genusKlebsiella0.1743.48e-141.17e-13
speciesLachnospiraceae_bacterium_5_1_57FAA0.1725.97e-142e-13
orderActinomycetales0.1718.84e-142.94e-13
speciesRothia_mucilaginosa0.1682.38e-137.86e-13
genusMethanosphaera-0.1683.06e-139.96e-13
speciesMethanosphaera_stadtmanae-0.1683.06e-139.96e-13
genusRothia0.1673.46e-131.12e-12
speciesC2likevirus_unclassified-0.1673.93e-131.26e-12
genusVeillonella0.1674.27e-131.36e-12
familyMicrococcaceae0.1664.32e-131.37e-12
genusC2likevirus-0.1656.32e-131.98e-12
speciesFusobacterium_nucleatum0.1656.35e-131.98e-12
speciesFusobacterium_mortiferum0.1649.12e-132.83e-12
speciesVeillonella_parvula0.1649.96e-133.07e-12
speciesAlistipes_onderdonkii-0.1631.53e-124.69e-12
genusStreptococcus0.1612.35e-127.16e-12
speciesBacteroides_pectinophilus-0.1612.4e-127.26e-12
speciesEubacterium_rectale-0.163.07e-129.23e-12
speciesBacteroides_thetaiotaomicron0.1586.09e-121.82e-11
genusErysipelotrichaceae_noname-0.1587.38e-122.19e-11
genusClostridium0.1578.18e-122.41e-11
familyClostridiaceae0.1561.29e-113.78e-11
speciesKlebsiella_pneumoniae0.1561.34e-113.9e-11
familyEubacteriaceae-0.1551.51e-114.37e-11
genusEubacterium-0.1551.52e-114.37e-11
familyStreptococcaceae0.1551.63e-114.66e-11
genusPantoea0.1523.73e-111.05e-10
speciesPantoea_unclassified0.1523.73e-111.05e-10
speciesLachnospiraceae_bacterium_2_1_46FAA0.156.8e-111.91e-10
speciesBacteroides_faecis-0.157.48e-112.09e-10
speciesBacteroides_ovatus0.1481.43e-103.97e-10
speciesMitsuokella_multacida-0.1471.63e-104.5e-10
speciesRuminococcus_bromii-0.1452.66e-107.3e-10
familySutterellaceae-0.1453.37e-109.19e-10
speciesLactobacillus_fermentum0.1444.34e-101.18e-09
speciesBacteroides_plebeius-0.1444.36e-101.18e-09
classClostridia-0.1444.5e-101.2e-09
orderClostridiales-0.1444.51e-101.2e-09
speciesEubacterium_dolichum0.1435.89e-101.56e-09
genusClostridiales_noname0.1427.55e-101.99e-09
speciesStreptococcus_anginosus0.1417.98e-102.09e-09
familySiphoviridae-0.1418.02e-102.09e-09
familyPorphyromonadaceae-0.1418.66e-102.25e-09
speciesStreptococcus_gordonii0.141.06e-092.73e-09
speciesOdoribacter_unclassified-0.141.34e-093.44e-09
speciesOscillibacter_unclassified-0.1382.16e-095.51e-09
speciesVeillonella_unclassified0.1382.35e-095.96e-09
speciesClostridium_asparagiforme0.1372.67e-096.74e-09
speciesEubacterium_hallii-0.1372.84e-097.13e-09
speciesVeillonella_dispar0.1363.64e-099.09e-09
phylumViruses_noname-0.1354.45e-091.1e-08
classViruses_noname-0.1354.45e-091.1e-08
genusButyricimonas-0.1354.82e-091.18e-08
speciesButyricimonas_synergistica-0.1354.82e-091.18e-08
classBacilli0.1338.12e-091.98e-08
speciesStreptococcus_salivarius0.1338.51e-092.06e-08
familyOscillospiraceae-0.1311.35e-083.23e-08
genusOscillibacter-0.1311.35e-083.23e-08
speciesBifidobacterium_pseudocatenulatum0.1311.44e-083.43e-08
orderLactobacillales0.1292.33e-085.53e-08
speciesStreptococcus_australis0.1282.54e-085.99e-08
classErysipelotrichia-0.1273.99e-089.28e-08
orderErysipelotrichales-0.1273.99e-089.28e-08
familyErysipelotrichaceae-0.1273.99e-089.28e-08
speciesVeillonella_atypica0.1264.97e-081.15e-07
speciesAlistipes_sp_AP11-0.1255.28e-081.22e-07
genusEnterococcus0.1247.26e-081.66e-07
familyEnterococcaceae0.1247.81e-081.78e-07
orderBurkholderiales-0.1239.7e-082.2e-07
speciesBacteroides_caccae-0.1239.88e-082.23e-07
speciesRuminococcus_obeum-0.1231.05e-072.36e-07
genusPeptostreptococcus0.1211.42e-073.18e-07
speciesLactobacillus_rhamnosus0.121.86e-074.14e-07
speciesEubacterium_cylindroides-0.121.9e-074.21e-07
speciesBacteroides_stercoris0.122.13e-074.7e-07
classBetaproteobacteria-0.1182.81e-076.17e-07
speciesStreptococcus_vestibularis0.1182.92e-076.38e-07
speciesEscherichia_unclassified0.1183.14e-076.83e-07
speciesEubacterium_sp_3_1_310.1165.39e-071.17e-06
phylumFirmicutes-0.1155.61e-071.21e-06
orderCaudovirales-0.1156.07e-071.3e-06
familyClostridiales_noname0.1147.71e-071.65e-06
speciesStreptococcus_mutans0.1138.75e-071.86e-06
speciesBifidobacterium_dentium0.1139.14e-071.93e-06
speciesBacteroides_coprophilus-0.1139.59e-072.02e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1121.27e-062.66e-06
speciesBacteroides_vulgatus0.1111.41e-062.94e-06
speciesPrevotella_stercorea-0.1082.64e-065.49e-06
speciesBacteroides_eggerthii-0.1083.02e-066.25e-06
speciesDialister_succinatiphilus-0.1073.3e-066.8e-06
speciesDorea_formicigenerans-0.1073.49e-067.16e-06
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genusAdlercreutzia-0.1064.2e-068.51e-06
speciesAdlercreutzia_equolifaciens-0.1064.2e-068.51e-06
speciesRoseburia_unclassified-0.1064.41e-068.9e-06
speciesCampylobacter_concisus0.1037.43e-061.49e-05
classDeltaproteobacteria-0.1038.57e-061.7e-05
orderDesulfovibrionales-0.1038.57e-061.7e-05
familyDesulfovibrionaceae-0.1038.57e-061.7e-05
speciesBifidobacterium_breve0.1038.6e-061.7e-05
speciesPrevotella_buccae0.1021.04e-052.05e-05
speciesStreptococcus_parasanguinis0.1011.27e-052.49e-05
genusAcidaminococcaceae_unclassified-0.0991.69e-053.3e-05
speciesEggerthella_sp_1_3_56FAA0.0991.72e-053.34e-05
speciesErysipelotrichaceae_bacterium_2_2_44A0.0982.39e-054.62e-05
speciesLactobacillus_salivarius0.0963.26e-056.28e-05
speciesKlebsiella_sp_MS_92_30.0963.41e-056.54e-05
speciesLactococcus_phage_P680-0.0954.12e-057.87e-05
speciesClostridium_sp_ATCC_BAA_4420.0954.14e-057.88e-05
speciesEnterococcus_faecalis0.0935.79e-050.00011
speciesParabacteroides_unclassified0.0935.89e-050.000111
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0927.38e-050.000139
speciesBacteroides_cellulosilyticus-0.0917.56e-050.000142
speciesClostridium_perfringens0.0917.71e-050.000144
speciesPeptostreptococcus_stomatis0.0918.15e-050.000151
speciesErysipelotrichaceae_bacterium_3_1_530.0918.26e-050.000152
speciesAlistipes_sp_HGB5-0.0918.27e-050.000152
speciesLachnospiraceae_bacterium_5_1_63FAA0.099.26e-050.00017
speciesGemella_morbillorum0.090.0001040.00019
speciesParabacteroides_sp_D13-0.090.0001040.00019
genusSutterellaceae_unclassified-0.0890.0001150.000209
speciesHaemophilus_sputorum0.0870.0001710.000309
genusMorganella0.0860.0001970.000354
speciesMorganella_morganii0.0860.0001970.000354
speciesCitrobacter_unclassified0.0860.0002070.00037
speciesKlebsiella_unclassified0.0850.0002320.000413
classNegativicutes-0.0850.0002420.000428
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genusAggregatibacter0.0840.0002560.000451
orderViruses_noname-0.0830.0003140.000551
speciesCollinsella_intestinalis0.0820.00040.000699
genusMegasphaera0.0810.0004240.000738
speciesStreptococcus_pasteurianus0.0810.0004450.000772
speciesBacteroides_salanitronis-0.080.0005380.00093
speciesStreptococcus_lutetiensis0.080.0005430.000935
speciesEnterobacteria_phage_HK5440.0780.0007250.00124
speciesLactococcus_phage_phi7-0.0780.0007440.00127
speciesLactobacillus_gasseri0.0780.000770.00131
genusWeissella0.0760.0009670.00164
speciesBifidobacterium_angulatum-0.0760.0009670.00164
genusCitrobacter0.0750.001120.00189
speciesHaemophilus_parainfluenzae0.0750.001150.00193
familyLeuconostocaceae0.0750.00120.00201
genusHaemophilus0.0740.001390.00232
genusRuminococcus-0.0730.001490.00248
speciesParabacteroides_johnsonii-0.0730.00160.00265
speciesBacteroides_xylanisolvens0.0720.001880.0031
speciesBacteroides_barnesiae-0.0720.001910.00314
orderPasteurellales0.0720.001950.00318
familyPasteurellaceae0.0720.001950.00318
speciesPeptostreptococcaceae_noname_unclassified-0.0710.002050.00334
speciesAggregatibacter_segnis0.0710.002220.0036
speciesRoseburia_inulinivorans-0.070.002310.00373
speciesLactobacillus_oris0.070.002370.00382
speciesWeissella_confusa0.0690.002720.00437
speciesLactobacillus_delbrueckii0.0680.003130.00501
speciesLactobacillus_amylovorus0.0680.003260.0052
speciesRuminococcus_sp_JC3040.0680.003460.0055
genusPropionibacterium0.0680.003480.00551
speciesCitrobacter_freundii0.0670.003650.00576
speciesBacteroides_coprocola-0.0670.003830.00603
speciesHoldemania_sp_AP20.0670.003940.00618
speciesKlebsiella_oxytoca0.0670.004010.00627
genusFaecalibacterium-0.0660.004310.00669
speciesFaecalibacterium_prausnitzii-0.0660.004310.00669
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0660.004430.00686
speciesHaemophilus_paraphrohaemolyticus0.0660.00450.00694
familySuccinivibrionaceae-0.0660.004550.007
speciesHoldemania_filiformis-0.0650.004710.00722
genusClostridiaceae_noname0.0650.004840.00737
speciesClostridiaceae_bacterium_JC1180.0650.004840.00737
speciesBifidobacterium_longum0.0650.005010.0076
genusSuccinatimonas-0.0640.005290.00798
speciesSuccinatimonas_hippei-0.0640.005290.00798
familyMyoviridae0.0640.005480.00824
genusLachnospiraceae_noname0.0640.005550.00829
speciesEnterococcus_faecium0.0640.005560.00829
speciesOdoribacter_laneus-0.0640.005570.00829
speciesBacteroides_finegoldii-0.0640.005760.00855
familyClostridiales_Family_XI_Incertae_Sedis0.0630.006260.00926
genusButyricicoccus0.0620.00720.0106
speciesButyricicoccus_pullicaecorum0.0620.00720.0106
speciesLactobacillus_vaginalis0.0620.007250.0106
speciesPorphyromonas_asaccharolytica-0.0620.007350.0107
genusActinobacillus0.0610.00810.0118
speciesActinobacillus_unclassified0.0610.00810.0118
genusAnaerostipes0.0610.008330.0121
speciesLactobacillus_mucosae0.0610.008610.0124
speciesLactobacillus_crispatus0.0610.008660.0125
speciesDialister_invisus0.0610.008850.0127
speciesLeuconostoc_lactis0.060.009150.0131
genusSiphoviridae_noname-0.060.009620.0137
speciesLactococcus_phage_936_sensu_lato-0.0590.01120.0159
speciesEnterobacter_aerogenes0.0580.01190.0169
speciesAcidaminococcus_fermentans-0.0580.01250.0177
speciesAnaerotruncus_colihominis0.0570.01440.0203
speciesLactococcus_phage_jm2-0.0550.01670.0235
speciesEnterobacter_cloacae0.0550.01720.0241
genusParasutterella-0.0540.02020.0281
speciesParasutterella_excrementihominis-0.0540.02020.0281
genusProteus0.0530.02130.0295
genusEnterobacter0.0530.02130.0295
speciesStreptococcus_infantarius0.0530.02230.0308
speciesWeissella_cibaria0.0520.02320.0319
speciesProteus_mirabilis0.0520.02560.0351
genusPorphyromonas-0.0510.02690.0368
speciesSutterella_parvirubra0.0480.0360.0491
speciesBacteroides_oleiciplenus0.0480.03620.0492
familyLactobacillaceae0.0480.03720.0505
orderCoriobacteriales-0.0480.03790.0511
familyCoriobacteriaceae-0.0480.03790.0511
genusMegamonas0.0480.03940.053
speciesMegamonas_unclassified0.0470.04060.0544
speciesBlautia_hydrogenotrophica0.0470.04080.0546
genusLeuconostoc0.0470.04170.0556
speciesRuminococcus_sp_5_1_39BFAA0.0470.04220.0561
speciesRuminococcus_torques0.0440.05520.0732
speciesErysipelotrichaceae_bacterium_21_3-0.0440.05540.0732
speciesEubacterium_limosum0.0440.05680.0749
speciesLactobacillus_sanfranciscensis0.0440.05890.0774
familyPropionibacteriaceae0.0430.06180.081
familyStaphylococcaceae0.0430.06460.0845
genusLactobacillus0.0430.06490.0846
genusBilophila-0.0420.06940.0902
genusMyoviridae_noname0.0420.0710.0921
speciesParabacteroides_sp_20_3-0.0410.0740.0957
speciesParabacteroides_distasonis-0.0410.07680.099
speciesLactobacillus_acidophilus0.0410.0790.102
speciesBilophila_unclassified-0.040.08310.107
speciesBilophila_wadsworthia-0.0390.09340.119
genusCampylobacter0.0390.09360.119
speciesRoseburia_intestinalis-0.0390.09390.119
genusStaphylococcus0.0380.09720.123
speciesBacteroides_dorei-0.0380.09820.124
genusRoseburia-0.0380.1030.13
familyVeillonellaceae0.0360.1180.149
orderBifidobacteriales0.0360.120.15
familyBifidobacteriaceae0.0360.120.15
speciesMegamonas_rupellensis0.0350.1250.156
familyCampylobacteraceae0.0350.1320.164
phylumActinobacteria0.0340.1410.175
classActinobacteria0.0340.1410.175
speciesLactobacillus_casei_paracasei0.0330.1480.183
speciesBifidobacterium_bifidum-0.0330.150.185
speciesHoldemania_unclassified-0.0330.1510.186
speciesBacteroides_massiliensis-0.0330.1540.189
genusBifidobacterium0.0330.1550.19
speciesMegamonas_funiformis-0.0330.1580.193
speciesBacteroides_sp_3_1_190.0320.1630.198
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0320.1640.199
speciesBacteroides_sp_1_1_6-0.0310.1750.211
speciesClostridium_sp_KLE_17550.0310.1750.211
speciesPeptostreptococcus_anaerobius0.0310.1770.213
speciesLactobacillus_plantarum0.030.1930.232
orderAeromonadales-0.030.1960.235
orderPseudomonadales0.0290.2050.245
speciesBacteroides_clarus-0.0290.2060.246
speciesSlackia_piriformis-0.0290.2120.252
speciesAnaerostipes_hadrus-0.0280.220.261
genusGordonibacter0.0270.2380.281
speciesGordonibacter_pamelaeae0.0270.2380.281
speciesCoprobacillus_sp_29_1-0.0270.2510.295
speciesParvimonas_unclassified0.0270.2520.296
genusParvimonas0.0260.2530.296
genusPyramidobacter0.0260.2540.296
speciesPyramidobacter_piscolens0.0260.2540.296
classEpsilonproteobacteria0.0250.2710.314
orderCampylobacterales0.0250.2710.314
speciesMegasphaera_elsdenii-0.0250.2750.318
speciesLactococcus_garvieae0.0250.2790.322
genusTuricibacter-0.0250.2810.323
speciesTuricibacter_unclassified-0.0240.2990.343
speciesErysipelotrichaceae_bacterium_6_1_450.0230.3220.369
speciesStreptococcus_thermophilus-0.0230.3230.369
speciesBacteroides_sp_2_1_220.0230.330.376
speciesBacteroides_intestinalis-0.0220.3440.391
speciesAcidaminococcus_intestini0.0220.3450.391
speciesPropionibacterium_freudenreichii0.0220.3490.395
genusParabacteroides-0.0220.3520.397
speciesAlistipes_unclassified0.0210.3550.4
speciesOscillibacter_sp_KLE_17280.0210.3610.406
speciesCollinsella_tanakaei0.0210.3620.406
phylumSynergistetes0.020.3990.443
classSynergistia0.020.3990.443
orderSynergistales0.020.3990.443
familySynergistaceae0.020.3990.443
speciesPorphyromonas_uenonis-0.0190.4170.462
speciesPrevotella_bivia0.0190.4180.462
genusAcidaminococcus-0.0180.4310.475
speciesBifidobacterium_catenulatum-0.0180.4320.475
genusPeptostreptococcaceae_noname-0.0180.4460.49
speciesStreptococcus_phage_Sfi210.0170.4660.51
speciesLactococcus_phage_bIL67-0.0170.4670.51
speciesCollinsella_unclassified0.0160.4890.533
familyViruses_noname-0.0150.5240.569
genusViruses_noname-0.0150.5240.569
speciesBifidobacterium_animalis-0.0140.5350.579
speciesClostridium_bartlettii-0.0140.5450.589
familyLachnospiraceae-0.0140.5510.594
speciesAcidaminococcus_unclassified-0.0120.610.656
familyPeptostreptococcaceae-0.0120.6170.662
speciesBacteroides_fluxus-0.0110.6420.687
genusLambdalikevirus0.0110.6470.691
speciesOscillibacter_sp_KLE_1745-0.0090.6840.729
genusPeptoniphilus0.0090.7020.746
speciesKlebsiella_phage_KP36-0.0080.7210.765
phylumBacteroidetes-0.0080.7240.765
classBacteroidia-0.0080.7260.765
orderBacteroidales-0.0080.7260.765
genusSlackia-0.0070.7610.8
speciesDorea_unclassified-0.0070.7640.801
genusLactococcus-0.0070.7770.812
speciesBacteroides_sp_4_3_47FAA0.0070.7780.812
familyBurkholderiales_noname-0.0060.7880.821
speciesBacteroides_nordii0.0050.8140.846
speciesBacteroides_uniformis-0.0050.8180.849
genusCoriobacteriaceae_noname0.0050.8260.855
speciesCoriobacteriaceae_bacterium_phI0.0050.8360.863
speciesLactococcus_lactis-0.0050.8390.865
genusHoldemania-0.0040.8650.889
speciesBacteroides_salyersiae-0.0040.8680.891
speciesMegamonas_hypermegale0.0040.8730.891
genusBurkholderiales_noname-0.0040.8740.891
speciesBurkholderiales_bacterium_1_1_47-0.0040.8740.891
speciesMegasphaera_unclassified0.0030.8920.907
speciesLachnospiraceae_bacterium_1_1_57FAA0.0030.8970.911
speciesLactobacillus_reuteri0.0030.9040.916
speciesTuricibacter_sanguinis-0.0030.9080.918
speciesCoprobacillus_sp_D6-0.0020.920.928
familyPodoviridae0.0020.9250.931
genusDialister0.0020.9320.936
speciesClostridium_spiroforme0.0010.9690.971
genusTunalikevirus0.0010.9730.973
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17663.618626910042.704269743170.00013993946312322237.39152
Liver cirrhosisChina1201143.754393314873.329844536360.00320361538715895430.0783
Type II diabetesDenmark752772.83694123822.665692167310.0468846555316703623.0636
Ulcerative colitisSpain78662.89493554252.704269743170.0713019373583583519.2485
Type II diabetesSweden53923.182916222132.991343667540.0920088963809337011.4121
Rheumatoid arthritisChina127983.416170014473.311234501280.190709496334862328.7558
ObesityDenmark1691232.707148541182.63098864360.2280552658041197839.3871
Type II diabetesChina1831853.782774121823.666632404920.3198584007421682855.6132
Colorectal cancerAustria64353.704178305024.111251241620.4313875754291574353.265
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382