MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-11-18 08:49:44 PST
Job id & description: 1539, IRG
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
IRG11190495Lack 5'-endK01720COG2079unknownunknown93.6798.4630.53
IRG11335096CompleteK01720COG2079unknownunknown75.5184.430.47
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusFlavonifractor0.7840.00.0
speciesFlavonifractor_plautii0.7840.00.0
familyClostridiales_noname0.5513.21e-1495.05e-147
speciesClostridium_bolteae0.4614.7e-995.55e-97
speciesClostridium_citroniae0.41.21e-721.14e-70
speciesClostridium_hathewayi0.378.41e-626.62e-60
speciesClostridiales_bacterium_1_7_47FAA0.3595.28e-583.56e-56
speciesClostridium_symbiosum0.3572.58e-571.52e-55
speciesRuminococcus_gnavus0.3461.43e-537.5e-52
familyBacteroidaceae0.3344.26e-501.83e-48
genusBacteroides0.3344.26e-501.83e-48
speciesAnaerotruncus_colihominis0.3161.54e-446.06e-43
speciesClostridium_asparagiforme0.3011.39e-405.05e-39
speciesCoprococcus_catus-0.2972.9e-399.78e-38
familyClostridiaceae0.2925.73e-381.8e-36
familyOscillospiraceae0.2892.17e-376.02e-36
genusOscillibacter0.2892.17e-376.02e-36
genusClostridium0.2861.25e-363.28e-35
speciesEggerthella_unclassified0.2837.68e-361.91e-34
genusEggerthella0.2831.16e-352.74e-34
speciesClostridium_clostridioforme0.2791.16e-342.61e-33
speciesMethanobrevibacter_smithii-0.2773.29e-347.06e-33
genusMethanobrevibacter-0.2692.09e-324.29e-31
classMethanobacteria-0.2684.52e-328.21e-31
orderMethanobacteriales-0.2684.52e-328.21e-31
familyMethanobacteriaceae-0.2684.52e-328.21e-31
speciesOscillibacter_unclassified0.2661.12e-311.96e-30
phylumEuryarchaeota-0.2644.24e-317.15e-30
genusCoprococcus-0.2611.72e-302.8e-29
genusCoprobacillus0.2571.24e-291.92e-28
genusClostridiales_noname0.2571.26e-291.92e-28
speciesLachnospiraceae_bacterium_1_4_56FAA0.254.64e-286.84e-27
speciesCoprobacillus_unclassified0.2499.85e-281.41e-26
familyRuminococcaceae-0.2431.65e-262.29e-25
speciesEubacterium_siraeum-0.247.84e-261.06e-24
genusParabacteroides0.2363.81e-255e-24
genusHoldemania0.2355.62e-257.17e-24
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2341.06e-241.32e-23
genusButyrivibrio-0.2322.47e-242.99e-23
classBacteroidia0.2322.75e-243.1e-23
orderBacteroidales0.2322.75e-243.1e-23
phylumBacteroidetes0.2322.76e-243.1e-23
speciesBifidobacterium_adolescentis-0.2299.21e-241.01e-22
speciesBacteroides_thetaiotaomicron0.2214.41e-224.73e-21
speciesClostridium_nexile0.2198.88e-229.31e-21
speciesLachnospiraceae_bacterium_5_1_57FAA0.2172.32e-212.38e-20
genusBilophila0.2154.46e-214.48e-20
speciesBilophila_unclassified0.2131.19e-201.17e-19
speciesSubdoligranulum_unclassified-0.2131.46e-201.41e-19
phylumFirmicutes-0.2112.38e-202.25e-19
speciesAnaerostipes_unclassified0.2113.33e-203.08e-19
speciesLachnospiraceae_bacterium_6_1_63FAA0.2098.07e-207.33e-19
speciesDorea_longicatena-0.2089.7e-208.64e-19
speciesBacteroides_ovatus0.2071.3e-191.14e-18
speciesBacteroides_fragilis0.2053.05e-192.62e-18
speciesEubacterium_biforme-0.2044.93e-194.16e-18
speciesCoprococcus_sp_ART55_1-0.2045.63e-194.66e-18
speciesLachnospiraceae_bacterium_2_1_58FAA0.2037.12e-195.79e-18
classClostridia-0.2021.16e-189.13e-18
orderClostridiales-0.2021.16e-189.13e-18
genusClostridiaceae_noname0.2011.42e-181.08e-17
speciesClostridiaceae_bacterium_JC1180.2011.42e-181.08e-17
genusSubdoligranulum-0.2012.02e-181.51e-17
classDeltaproteobacteria0.1984.9e-183.5e-17
orderDesulfovibrionales0.1984.9e-183.5e-17
familyDesulfovibrionaceae0.1984.9e-183.5e-17
speciesButyrivibrio_crossotus-0.1985.12e-183.61e-17
speciesEubacterium_ramulus-0.1978.82e-186.09e-17
speciesClostridium_ramosum0.1978.9e-186.09e-17
speciesBilophila_wadsworthia0.1952.1e-171.42e-16
speciesEubacterium_dolichum0.1917.55e-175.02e-16
speciesBlautia_producta0.1917.67e-175.03e-16
genusOlsenella-0.191.06e-166.85e-16
speciesCollinsella_aerofaciens-0.1882.65e-161.69e-15
phylumFusobacteria0.1864.95e-163.03e-15
classFusobacteriia0.1864.95e-163.03e-15
orderFusobacteriales0.1864.95e-163.03e-15
speciesOlsenella_unclassified-0.1865.04e-163.05e-15
familyFusobacteriaceae0.1822.32e-151.39e-14
genusFusobacterium0.1781.03e-146.08e-14
speciesCoprococcus_comes-0.1744.15e-142.42e-13
genusDorea-0.1711.05e-136.04e-13
speciesEggerthella_lenta0.1682.3e-131.31e-12
phylumProteobacteria0.1683e-131.69e-12
familyPorphyromonadaceae0.1674.28e-132.38e-12
genusMitsuokella-0.1664.55e-132.5e-12
speciesMitsuokella_unclassified-0.1664.92e-132.67e-12
speciesCoprococcus_eutactus-0.1665.79e-133.11e-12
speciesMethanobrevibacter_unclassified-0.1631.42e-127.53e-12
speciesBacteroides_xylanisolvens0.1631.47e-127.71e-12
speciesAlistipes_senegalensis-0.163.66e-121.9e-11
familyBacteroidales_noname-0.1551.42e-117.13e-11
genusBacteroidales_noname-0.1551.42e-117.13e-11
speciesBacteroidales_bacterium_ph8-0.1551.42e-117.13e-11
speciesAnaerotruncus_unclassified-0.1515.2e-112.58e-10
genusCollinsella-0.156.13e-113.01e-10
speciesEubacterium_sp_3_1_310.1498.58e-114.18e-10
speciesEscherichia_coli0.1498.87e-114.27e-10
speciesRuminococcus_champanellensis-0.1481.24e-105.9e-10
speciesBifidobacterium_pseudocatenulatum0.1481.25e-105.9e-10
speciesBacteroides_stercoris0.1481.31e-106.12e-10
speciesErysipelotrichaceae_bacterium_2_2_44A0.1471.63e-107.54e-10
speciesRuminococcus_obeum-0.1462.46e-101.13e-09
phylumVerrucomicrobia-0.1452.96e-101.28e-09
classVerrucomicrobiae-0.1452.96e-101.28e-09
orderVerrucomicrobiales-0.1452.96e-101.28e-09
familyVerrucomicrobiaceae-0.1452.96e-101.28e-09
genusAkkermansia-0.1452.96e-101.28e-09
speciesAkkermansia_muciniphila-0.1452.96e-101.28e-09
speciesBacteroides_pectinophilus-0.1453.09e-101.33e-09
genusEscherichia0.1434.76e-102.02e-09
speciesFusobacterium_ulcerans0.1426.51e-102.74e-09
speciesSubdoligranulum_sp_4_3_54A2FAA0.1411.02e-094.26e-09
speciesOscillibacter_sp_KLE_17450.1372.84e-091.18e-08
speciesKlebsiella_pneumoniae0.1355.08e-092.09e-08
orderEnterobacteriales0.1345.92e-092.39e-08
familyEnterobacteriaceae0.1345.92e-092.39e-08
speciesHoldemania_filiformis0.1338.35e-093.34e-08
speciesRoseburia_hominis-0.131.53e-086.07e-08
speciesEubacterium_rectale-0.1273.64e-081.43e-07
genusBarnesiella-0.1264.56e-081.76e-07
speciesBarnesiella_intestinihominis-0.1264.56e-081.76e-07
genusKlebsiella0.1246.84e-082.62e-07
familyEubacteriaceae-0.1248.12e-083.09e-07
genusEubacterium-0.1238.47e-083.2e-07
speciesHoldemania_sp_AP20.1239.81e-083.67e-07
speciesDorea_formicigenerans-0.1221.26e-074.68e-07
speciesLactobacillus_ruminis-0.1221.29e-074.76e-07
speciesBacteroides_oleiciplenus0.1221.3e-074.76e-07
speciesLachnospiraceae_bacterium_1_1_57FAA0.1211.39e-075.05e-07
familyLachnospiraceae-0.1192.42e-078.72e-07
speciesBacteroides_nordii0.1192.47e-078.83e-07
speciesParaprevotella_unclassified-0.1192.65e-079.4e-07
speciesFusobacterium_varium0.1192.73e-079.62e-07
genusParaprevotella-0.1182.78e-079.72e-07
speciesMegamonas_unclassified0.1174.18e-071.45e-06
genusMegamonas0.1174.27e-071.47e-06
genusCatenibacterium-0.1164.62e-071.57e-06
speciesCatenibacterium_mitsuokai-0.1164.62e-071.57e-06
speciesLachnospiraceae_bacterium_7_1_58FAA0.1148.23e-072.77e-06
speciesParaprevotella_clara-0.1148.62e-072.89e-06
genusRuminococcus-0.1139.52e-073.16e-06
speciesRuminococcus_bromii-0.1131.04e-063.43e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1121.33e-064.36e-06
genusBlautia0.1111.42e-064.62e-06
speciesBacteroides_uniformis0.1111.43e-064.62e-06
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1082.78e-068.93e-06
genusTuricibacter-0.1082.98e-069.5e-06
speciesEubacterium_hallii-0.1073.54e-061.12e-05
speciesBacteroides_vulgatus0.1073.78e-061.19e-05
speciesAnaerostipes_hadrus-0.1064.12e-061.29e-05
classGammaproteobacteria0.1064.58e-061.42e-05
speciesMegamonas_rupellensis0.1064.67e-061.44e-05
speciesHoldemania_unclassified0.1055.86e-061.8e-05
speciesEubacterium_eligens-0.1046e-061.83e-05
genusFaecalibacterium-0.1037.31e-062.2e-05
speciesFaecalibacterium_prausnitzii-0.1037.31e-062.2e-05
orderActinomycetales-0.1037.35e-062.2e-05
speciesCollinsella_tanakaei0.1037.5e-062.23e-05
genusMethanosphaera-0.1038.74e-062.56e-05
speciesMethanosphaera_stadtmanae-0.1038.74e-062.56e-05
speciesParabacteroides_distasonis0.1038.82e-062.57e-05
genusPhascolarctobacterium-0.1021.03e-052.96e-05
speciesPhascolarctobacterium_succinatutens-0.1021.03e-052.96e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1021.09e-053.12e-05
speciesTuricibacter_unclassified-0.11.4e-053.98e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.11.45e-054.1e-05
speciesParaprevotella_xylaniphila-0.0991.63e-054.58e-05
speciesCollinsella_intestinalis0.0991.73e-054.83e-05
speciesBlautia_hydrogenotrophica0.0991.81e-055.02e-05
genusOxalobacter-0.0991.83e-055.02e-05
speciesOxalobacter_formigenes-0.0991.83e-055.02e-05
speciesTuricibacter_sanguinis-0.0991.86e-055.07e-05
genusButyricicoccus0.0982.01e-055.42e-05
speciesButyricicoccus_pullicaecorum0.0982.01e-055.42e-05
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0982.23e-055.98e-05
speciesMitsuokella_multacida-0.0972.43e-056.46e-05
familyOxalobacteraceae-0.0972.45e-056.46e-05
speciesBacteroides_caccae0.0972.45e-056.46e-05
genusRothia-0.0953.84e-050.000101
familyMicrococcaceae-0.0953.96e-050.000103
speciesLactobacillus_rhamnosus-0.0954.08e-050.000106
speciesStreptococcus_pasteurianus0.0954.16e-050.000107
speciesPrevotella_bivia0.0944.55e-050.000117
familySiphoviridae-0.0935.58e-050.000142
speciesClostridium_sp_ATCC_BAA_4420.0926.44e-050.000163
genusBifidobacterium-0.0917.66e-050.000193
speciesErysipelotrichaceae_bacterium_3_1_530.0918.47e-050.000213
genusCoprobacter-0.090.0001010.000251
speciesCoprobacter_fastidiosus-0.090.0001010.000251
orderBifidobacteriales-0.090.0001040.000256
familyBifidobacteriaceae-0.090.0001040.000256
familyBurkholderiales_noname0.0880.000140.000342
genusBurkholderiales_noname0.0870.000160.000387
speciesBurkholderiales_bacterium_1_1_470.0870.000160.000387
speciesEscherichia_unclassified0.0870.0001730.000417
speciesRothia_mucilaginosa-0.0860.0001990.000477
genusErysipelotrichaceae_noname-0.0860.0002010.000479
speciesClostridium_sp_L2_50-0.0860.0002090.000496
speciesRuminococcus_lactaris-0.0850.0002450.000578
genusActinomyces-0.0850.0002460.000578
classBetaproteobacteria0.0840.0002610.00061
speciesButyrivibrio_unclassified-0.0830.000330.000767
speciesStreptococcus_thermophilus-0.0820.0003760.00087
phylumViruses_noname-0.0820.0004020.000921
classViruses_noname-0.0820.0004020.000921
speciesRuminococcus_callidus-0.0820.0004080.00093
orderBurkholderiales0.0810.0004240.000962
familyActinomycetaceae-0.080.0004970.00112
genusWeissella0.080.0005070.00114
phylumActinobacteria-0.080.0005110.00114
classActinobacteria-0.080.0005110.00114
speciesRuminococcus_torques0.0790.0006310.0014
speciesStreptococcus_vestibularis-0.0780.0007020.00155
speciesAcidaminococcus_intestini0.0780.000710.00156
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0760.001040.00227
speciesRoseburia_unclassified-0.0750.001150.0025
genusPyramidobacter0.0750.001190.00256
speciesPyramidobacter_piscolens0.0750.001190.00256
genusPropionibacterium-0.0750.001220.00262
speciesLactococcus_phage_P680-0.0740.001280.00273
speciesFusobacterium_mortiferum0.0740.001330.00282
genusGordonibacter0.0740.001340.00282
speciesGordonibacter_pamelaeae0.0740.001340.00282
orderCaudovirales-0.0730.001530.00321
genusLachnospiraceae_noname0.0730.001590.00332
speciesParabacteroides_unclassified0.0730.001650.00343
speciesMegamonas_hypermegale0.0720.001710.00352
speciesBacteroides_salyersiae0.0720.001710.00352
speciesStreptococcus_parasanguinis-0.0720.001750.00359
genusLactobacillus-0.0720.001790.00366
speciesCitrobacter_freundii0.0720.001830.00372
phylumSynergistetes0.0720.001910.00382
classSynergistia0.0720.001910.00382
orderSynergistales0.0720.001910.00382
familySynergistaceae0.0720.001910.00382
speciesBifidobacterium_animalis-0.0720.001960.0039
speciesPeptostreptococcaceae_noname_unclassified-0.0710.002070.00411
genusAcidaminococcus0.0710.002090.00413
familyLactobacillaceae-0.0710.002180.00429
speciesStreptococcus_infantarius0.0710.002250.00441
speciesParabacteroides_goldsteinii0.070.002610.00509
genusCitrobacter0.0690.002690.00522
familyRikenellaceae0.0690.002710.00522
genusAlistipes0.0690.002710.00522
speciesLactobacillus_casei_paracasei-0.0690.002720.00522
speciesWeissella_confusa0.0690.003010.00573
speciesSutterella_wadsworthensis-0.0690.003010.00573
speciesBacteroides_sp_3_1_190.0670.003720.00705
speciesC2likevirus_unclassified-0.0660.004060.00767
classBacilli-0.0660.00410.00771
genusC2likevirus-0.0660.004220.0079
orderLactobacillales-0.0660.004370.00815
genusAdlercreutzia-0.0660.004410.00816
speciesAdlercreutzia_equolifaciens-0.0660.004410.00816
speciesCitrobacter_unclassified0.0660.004490.00828
speciesStreptococcus_lutetiensis0.0640.005550.0102
speciesKlebsiella_unclassified0.0640.005590.0102
genusPantoea0.0640.00570.0103
speciesPantoea_unclassified0.0640.00570.0103
speciesParabacteroides_johnsonii0.0640.005910.0107
genusSutterella-0.0630.00620.0112
speciesRuminococcus_sp_5_1_39BFAA-0.0630.006390.0115
speciesBifidobacterium_catenulatum-0.0630.006570.0117
genusMorganella0.0620.007110.0126
speciesMorganella_morganii0.0620.007110.0126
speciesBifidobacterium_angulatum-0.0610.007820.0138
speciesPropionibacterium_freudenreichii-0.0610.008540.015
speciesEubacterium_cylindroides-0.060.009110.016
speciesCoprobacillus_sp_29_10.060.009210.0161
speciesClostridium_sp_KLE_17550.060.009540.0166
speciesPorphyromonas_uenonis0.0590.01060.0184
speciesLactobacillus_gasseri-0.0590.01110.0192
speciesStreptococcus_phage_Sfi210.0580.01230.0212
speciesOscillibacter_sp_KLE_17280.0580.01270.0217
speciesBacteroides_sp_2_1_220.0580.01270.0217
speciesMegamonas_funiformis0.0570.01380.0235
speciesBacteroides_massiliensis0.0560.01530.026
genusPseudoflavonifractor-0.0560.01540.026
speciesPseudoflavonifractor_capillosus-0.0560.01540.026
familyPrevotellaceae-0.0560.01570.0262
genusParasutterella0.0560.01570.0262
speciesParasutterella_excrementihominis0.0560.01570.0262
familySutterellaceae0.0560.01620.0269
speciesDialister_succinatiphilus-0.0550.01770.0293
speciesLeuconostoc_lactis0.0540.02050.0338
speciesCoriobacteriaceae_bacterium_phI0.0530.0210.0345
speciesLactobacillus_fermentum-0.0530.02270.0372
familyLeuconostocaceae0.0530.02280.0372
speciesBacteroides_intestinalis0.0520.02330.0379
speciesBacteroides_clarus0.0520.02360.0383
genusCoriobacteriaceae_noname0.0520.02370.0383
familyPropionibacteriaceae-0.0520.02440.0393
speciesAcidaminococcus_unclassified0.0520.02520.0405
genusSiphoviridae_noname-0.0520.02550.0408
speciesCollinsella_unclassified0.050.02930.0467
genusPorphyromonas0.050.02950.0469
genusPeptoniphilus0.050.02970.047
speciesParabacteroides_merdae0.050.02980.047
speciesEubacterium_ventriosum-0.0490.03310.0521
speciesStreptococcus_mutans-0.0490.03370.0528
speciesAlistipes_shahii-0.0490.03380.0528
speciesEubacterium_limosum0.0490.03520.0548
orderCoriobacteriales-0.0480.03640.0563
familyCoriobacteriaceae-0.0480.03640.0563
speciesRuminococcus_sp_JC304-0.0480.03650.0563
speciesLactobacillus_sanfranciscensis0.0480.03990.0613
speciesBacteroides_faecis0.0470.04340.0664
speciesEnterobacter_cloacae0.0470.04350.0664
speciesClostridium_bartlettii0.0470.04360.0664
speciesLactococcus_garvieae0.0460.04460.0677
speciesPorphyromonas_asaccharolytica0.0460.04770.0722
genusEnterobacter0.0460.04840.073
speciesBifidobacterium_longum-0.0450.04970.0747
speciesBacteroides_finegoldii0.0450.05370.0805
speciesAlistipes_sp_HGB5-0.0430.06350.0948
speciesHaemophilus_parainfluenzae-0.0430.06560.0977
orderPasteurellales-0.0420.06710.0993
familyPasteurellaceae-0.0420.06710.0993
genusHaemophilus-0.0420.0680.1
familyStreptococcaceae-0.0420.06960.102
speciesBacteroides_coprophilus-0.0410.07610.112
speciesWeissella_cibaria0.0410.07920.116
genusStreptococcus-0.040.08710.127
speciesLactococcus_lactis-0.0390.08880.129
genusCampylobacter0.0390.08920.129
familyViruses_noname-0.0390.08940.129
genusViruses_noname-0.0390.08940.129
speciesBacteroides_cellulosilyticus0.0390.09220.132
genusAcidaminococcaceae_unclassified0.0390.0930.133
speciesParabacteroides_sp_D13-0.0380.10.143
genusActinobacillus-0.0380.1040.147
speciesActinobacillus_unclassified-0.0380.1040.147
speciesLactobacillus_salivarius0.0380.1040.147
speciesBacteroides_plebeius0.0370.1060.149
speciesPeptostreptococcus_anaerobius0.0370.1070.15
speciesCoprobacillus_sp_D60.0370.1080.151
speciesBacteroides_salanitronis-0.0360.1150.161
familyCampylobacteraceae0.0360.1180.164
speciesEggerthella_sp_1_3_56FAA-0.0350.1270.176
genusAnaerostipes-0.0350.1350.187
familyStaphylococcaceae0.0340.1410.195
speciesDesulfovibrio_piger-0.0330.1530.211
orderPseudomonadales-0.0330.1540.211
speciesAlistipes_sp_AP110.0330.1560.213
genusStaphylococcus0.0320.1670.228
speciesOdoribacter_laneus-0.0320.1680.229
genusRuminococcaceae_noname0.0320.170.23
speciesRuminococcaceae_bacterium_D160.0320.170.23
speciesEnterobacter_aerogenes0.0320.1720.232
speciesStreptococcus_salivarius-0.0310.1740.234
orderViruses_noname-0.0310.1860.249
classEpsilonproteobacteria0.0310.1870.249
orderCampylobacterales0.0310.1870.249
speciesMegasphaera_micronuciformis0.030.20.266
speciesOdoribacter_unclassified-0.0290.2170.288
speciesVeillonella_atypica-0.0280.220.291
speciesFusobacterium_nucleatum0.0280.2230.294
genusMegasphaera0.0280.2240.295
familyMyoviridae0.0280.2350.308
speciesAcidaminococcus_fermentans0.0270.2360.309
speciesLactobacillus_reuteri-0.0270.2440.318
speciesBifidobacterium_dentium-0.0270.2450.319
genusTunalikevirus-0.0260.2530.328
speciesBacteroides_coprocola0.0250.2750.356
speciesBacteroides_dorei0.0250.2790.359
speciesCampylobacter_concisus0.0250.280.359
speciesKlebsiella_sp_MS_92_30.0250.280.359
familyEnterococcaceae-0.0250.2830.362
classErysipelotrichia-0.0240.2910.369
orderErysipelotrichales-0.0240.2910.369
familyErysipelotrichaceae-0.0240.2910.369
speciesBacteroides_barnesiae-0.0240.2960.375
familyVeillonellaceae0.0240.2980.376
speciesSlackia_piriformis0.0240.3010.379
speciesClostridium_perfringens0.0240.3060.384
familyPodoviridae0.0240.3070.384
speciesLactobacillus_delbrueckii-0.0230.3160.395
genusLactococcus-0.0230.3170.395
genusSutterellaceae_unclassified0.0230.3220.4
speciesMegasphaera_unclassified0.0230.3230.4
genusAggregatibacter0.0230.3250.402
orderAeromonadales-0.0220.3370.415
speciesRoseburia_intestinalis-0.0220.3530.434
speciesClostridium_spiroforme0.0210.3540.434
genusEnterococcus-0.0210.3560.435
speciesLactococcus_phage_phi7-0.0210.3660.446
speciesKlebsiella_phage_KP36-0.020.3790.46
speciesBacteroides_sp_4_3_47FAA0.020.380.46
speciesStreptococcus_australis0.020.380.46
speciesAggregatibacter_segnis0.020.3830.462
speciesDorea_unclassified0.0190.4070.49
speciesBifidobacterium_bifidum-0.0180.4250.51
speciesPrevotella_buccae0.0180.4330.517
genusSuccinatimonas-0.0180.4340.517
speciesSuccinatimonas_hippei-0.0180.4340.517
speciesRoseburia_inulinivorans-0.0180.4350.517
genusSlackia0.0180.4390.52
familySuccinivibrionaceae-0.0180.4410.52
familyAcidaminococcaceae-0.0180.4410.52
speciesBacteroides_sp_1_1_60.0180.4440.523
speciesDesulfovibrio_desulfuricans0.0180.4470.525
speciesAlistipes_onderdonkii0.0180.4480.525
genusDialister-0.0170.4630.541
speciesStreptococcus_gordonii-0.0170.4660.543
speciesHaemophilus_sputorum0.0170.4670.543
genusPeptostreptococcus0.0170.4760.552
genusPeptostreptococcaceae_noname-0.0160.4770.552
speciesEnterococcus_faecium-0.0160.4860.561
speciesBacteroides_eggerthii0.0160.4890.563
familyPeptostreptococcaceae-0.0160.4950.567
speciesLactococcus_phage_jm2-0.0160.4950.567
speciesDialister_invisus0.0150.5070.579
speciesLactobacillus_amylovorus0.0150.5080.579
speciesStreptococcus_anginosus-0.0150.5170.588
classNegativicutes0.0150.5210.59
orderSelenomonadales0.0150.5210.59
genusPrevotella0.0150.5240.592
speciesVeillonella_parvula0.0140.5560.626
genusProteus0.0130.5620.632
speciesProteus_mirabilis0.0130.5780.648
speciesLactobacillus_crispatus0.0130.5870.657
speciesGemella_morbillorum0.0120.5940.663
speciesStreptococcus_mitis_oralis_pneumoniae-0.0120.5990.667
speciesLactobacillus_mucosae-0.0120.6030.67
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0120.6110.677
speciesErysipelotrichaceae_bacterium_21_30.0110.630.696
speciesEnterobacteria_phage_HK544-0.0110.6420.708
speciesAlistipes_finegoldii0.0110.6480.713
speciesEnterococcus_faecalis-0.010.6540.716
speciesVeillonella_unclassified-0.010.6540.716
speciesLactococcus_phage_bIL670.010.6580.719
speciesAlistipes_unclassified-0.010.660.719
familyClostridiales_Family_XI_Incertae_Sedis0.010.6720.731
genusRoseburia-0.0080.7360.797
familyBacillales_noname0.0080.7390.797
genusGemella0.0080.7390.797
orderBacillales0.0080.740.797
genusLambdalikevirus-0.0080.7420.798
speciesBacteroides_fluxus-0.0070.7520.804
speciesParvimonas_unclassified-0.0070.7520.804
genusParvimonas-0.0070.7550.804
speciesHaemophilus_paraphrohaemolyticus-0.0070.7550.804
genusMyoviridae_noname0.0070.7620.81
genusAnaerotruncus0.0070.7670.813
speciesPrevotella_stercorea0.0070.7680.813
speciesLactobacillus_vaginalis0.0070.7710.814
speciesPeptostreptococcus_stomatis-0.0060.7970.84
genusOdoribacter-0.0060.8030.844
speciesParabacteroides_sp_20_30.0050.820.86
speciesLactobacillus_oris0.0050.8280.865
speciesAlistipes_indistinctus-0.0050.8280.865
genusDesulfovibrio-0.0050.8310.866
speciesMegasphaera_elsdenii-0.0050.8360.869
speciesLactococcus_phage_936_sensu_lato-0.0050.8410.872
speciesVeillonella_dispar0.0040.860.889
genusLeuconostoc0.0040.8610.889
speciesLactobacillus_plantarum0.0030.8910.918
speciesKlebsiella_oxytoca0.0020.9230.949
genusSolobacterium-0.0020.9440.967
speciesSolobacterium_moorei-0.0020.9440.967
speciesSutterella_parvirubra0.0010.9480.969
speciesOdoribacter_splanchnicus0.0010.9530.97
genusButyricimonas-0.0010.9560.97
speciesButyricimonas_synergistica-0.0010.9560.97
speciesPrevotella_copri-0.0010.9630.975
speciesBifidobacterium_breve0.0010.9680.975
speciesAlistipes_putredinis-0.0010.9680.975
genusVeillonella-0.0010.9690.975
speciesStreptococcus_sanguinis-0.0010.9760.98
speciesLactobacillus_acidophilus0.00.9830.985
speciesClostridium_leptum0.00.9920.992
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.004206125553230.0005184442873220.00021023244067725458.46218
ObesityDenmark1691230.000534792060840.0003222429252130.0031547348626714534.77788
Rheumatoid arthritisChina127980.00127462508950.0006861220185360.159817235612748524.9608
Colorectal cancerAustria64350.0003008795102210.0001375441524050.182722301345784526.5428
Type II diabetesDenmark752770.0006572966135950.0004492175776840.1970627968061297142.5181
Liver cirrhosisChina1201140.001388628553670.001223327260440.6692345667362637788.6056
Type II diabetesChina1831850.001567620561490.001791617941120.9229935904282891895.5683
Ulcerative colitisSpain78660.0004760674827940.0005184442873220.9269633864312872094.7417
Type II diabetesSweden53920.0006123268531530.0002730925745590.9818775996842899498.1849
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382