MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-11-23 04:27:39 PST
Job id & description: 1547, 158802708-stool1_revised_scaffold4020_1_gene9344
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
158802708-stool1_revised2338655Lack both endsunknownunknownunknownunknown100.0100.0100.0
158802708-stool1_revised2433629Lack both endsunknownunknownunknownunknown83.9386.5953.52
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesAlistipes_senegalensis0.3772.7e-641.27e-61
genusOxalobacter0.3291.77e-482.78e-46
speciesOxalobacter_formigenes0.3291.77e-482.78e-46
familyOxalobacteraceae0.3279.01e-481.06e-45
phylumEuryarchaeota0.326.85e-466.47e-44
genusMethanobrevibacter0.3191.79e-451.41e-43
classMethanobacteria0.3183.39e-451.78e-43
orderMethanobacteriales0.3183.39e-451.78e-43
familyMethanobacteriaceae0.3183.39e-451.78e-43
speciesMethanobrevibacter_smithii0.3169.17e-454.33e-43
speciesAnaerotruncus_unclassified0.32.56e-401.1e-38
speciesRuminococcus_gnavus-0.2959.29e-393.65e-37
speciesSubdoligranulum_unclassified0.2932.29e-388.31e-37
genusSubdoligranulum0.2883.63e-371.22e-35
speciesEubacterium_siraeum0.2884.66e-371.47e-35
familyBacteroidales_noname0.2812.42e-356.35e-34
genusBacteroidales_noname0.2812.42e-356.35e-34
speciesBacteroidales_bacterium_ph80.2812.42e-356.35e-34
speciesEggerthella_unclassified-0.2791.08e-342.68e-33
genusEggerthella-0.2781.61e-343.8e-33
genusOdoribacter0.2781.84e-344.14e-33
genusCoprobacter0.2691.97e-324.04e-31
speciesCoprobacter_fastidiosus0.2691.97e-324.04e-31
speciesOdoribacter_splanchnicus0.2661.17e-312.3e-30
genusButyrivibrio0.2661.23e-312.32e-30
speciesMitsuokella_unclassified0.2571.43e-292.6e-28
genusMitsuokella0.2545.47e-299.56e-28
genusDesulfovibrio0.2521.65e-282.78e-27
genusBarnesiella0.2512.82e-284.44e-27
speciesBarnesiella_intestinihominis0.2512.82e-284.44e-27
speciesMethanobrevibacter_unclassified0.2441.04e-261.58e-25
genusAnaerotruncus0.248.13e-261.2e-24
speciesAlistipes_shahii0.2391.01e-251.44e-24
speciesCoprobacillus_unclassified-0.2281.6e-232.22e-22
speciesDesulfovibrio_desulfuricans0.2222.18e-222.94e-21
genusCoprobacillus-0.2214.84e-226.35e-21
phylumVerrucomicrobia0.227.28e-228.18e-21
classVerrucomicrobiae0.227.28e-228.18e-21
orderVerrucomicrobiales0.227.28e-228.18e-21
familyVerrucomicrobiaceae0.227.28e-228.18e-21
genusAkkermansia0.227.28e-228.18e-21
speciesAkkermansia_muciniphila0.227.28e-228.18e-21
speciesOlsenella_unclassified0.2155.97e-216.55e-20
speciesClostridium_bolteae-0.2156.49e-216.96e-20
speciesRuminococcus_champanellensis0.2062.16e-192.27e-18
speciesCoprococcus_sp_ART55_10.2044.41e-194.53e-18
speciesLachnospiraceae_bacterium_7_1_58FAA0.2038.72e-198.76e-18
genusButyricimonas0.22.08e-182e-17
speciesButyricimonas_synergistica0.22.08e-182e-17
genusOlsenella0.1993.57e-183.37e-17
speciesParaprevotella_xylaniphila0.1961.09e-171.01e-16
speciesEubacterium_biforme0.1933.7e-173.36e-16
genusCoprococcus0.1925.41e-174.82e-16
speciesButyrivibrio_crossotus0.1926.22e-175.44e-16
speciesAlistipes_indistinctus0.1917.17e-176.15e-16
speciesClostridium_symbiosum-0.1918.94e-177.54e-16
genusParaprevotella0.1882.51e-162.08e-15
speciesParaprevotella_unclassified0.1882.72e-162.21e-15
genusPseudoflavonifractor0.1874.05e-163.19e-15
speciesPseudoflavonifractor_capillosus0.1874.05e-163.19e-15
speciesRoseburia_hominis0.1865.77e-164.46e-15
speciesStreptococcus_salivarius-0.1857.03e-165.35e-15
familySutterellaceae0.1858.37e-166.27e-15
familyFusobacteriaceae-0.1849.51e-167.01e-15
speciesEggerthella_lenta-0.1822.02e-151.47e-14
genusFusobacterium-0.1822.42e-151.73e-14
familyAcidaminococcaceae0.1822.49e-151.75e-14
orderBurkholderiales0.1813.66e-152.54e-14
phylumFusobacteria-0.184.54e-153.02e-14
classFusobacteriia-0.184.54e-153.02e-14
orderFusobacteriales-0.184.54e-153.02e-14
speciesParaprevotella_clara0.184.94e-153.22e-14
genusCatenibacterium0.185.05e-153.22e-14
speciesCatenibacterium_mitsuokai0.185.05e-153.22e-14
speciesDesulfovibrio_piger0.1797.44e-154.68e-14
familyPorphyromonadaceae0.1789.83e-156.1e-14
classBetaproteobacteria0.1771.09e-146.68e-14
speciesClostridium_ramosum-0.1735.32e-143.22e-13
genusPhascolarctobacterium0.1726.55e-143.86e-13
speciesPhascolarctobacterium_succinatutens0.1726.55e-143.86e-13
genusStreptococcus-0.1682.7e-131.57e-12
speciesBifidobacterium_adolescentis0.1682.73e-131.57e-12
familyStreptococcaceae-0.1656.74e-133.83e-12
speciesLachnospiraceae_bacterium_1_4_56FAA-0.1641.06e-125.96e-12
familyRikenellaceae0.1631.28e-127.03e-12
genusAlistipes0.1631.28e-127.03e-12
speciesSutterella_wadsworthensis0.1621.88e-121.02e-11
classBacilli-0.163.46e-121.86e-11
orderLactobacillales-0.1586e-123.18e-11
familyPrevotellaceae0.1579.65e-125.06e-11
speciesCoprococcus_catus0.1561.24e-116.43e-11
genusSutterella0.1542.15e-111.1e-10
familyRuminococcaceae0.1514.69e-112.38e-10
speciesAlistipes_putredinis0.1515.83e-112.93e-10
speciesClostridium_citroniae-0.1471.5e-107.45e-10
speciesMitsuokella_multacida0.1462.48e-101.22e-09
genusVeillonella-0.1452.65e-101.29e-09
speciesStreptococcus_sanguinis-0.1452.91e-101.4e-09
speciesVeillonella_parvula-0.1453.06e-101.46e-09
speciesAlistipes_finegoldii0.1444.01e-101.89e-09
speciesParabacteroides_merdae0.1435.62e-102.63e-09
speciesClostridiales_bacterium_1_7_47FAA-0.1418.38e-103.84e-09
speciesClostridium_hathewayi-0.1418.47e-103.84e-09
speciesClostridium_nexile-0.1418.47e-103.84e-09
speciesStreptococcus_vestibularis-0.141.37e-096.16e-09
speciesDorea_longicatena0.1391.61e-097.17e-09
familyBacillales_noname-0.1391.65e-097.21e-09
genusGemella-0.1391.65e-097.21e-09
speciesAlistipes_onderdonkii0.1372.58e-091.12e-08
speciesMegasphaera_micronuciformis-0.1372.89e-091.24e-08
classDeltaproteobacteria0.1372.97e-091.24e-08
orderDesulfovibrionales0.1372.97e-091.24e-08
familyDesulfovibrionaceae0.1372.97e-091.24e-08
speciesBacteroides_fragilis-0.1354.27e-091.77e-08
genusFlavonifractor-0.1354.97e-092.02e-08
speciesFlavonifractor_plautii-0.1354.97e-092.02e-08
speciesCollinsella_aerofaciens0.1345.85e-092.36e-08
genusRuminococcaceae_noname0.1346.4e-092.54e-08
speciesRuminococcaceae_bacterium_D160.1346.4e-092.54e-08
speciesButyrivibrio_unclassified0.1329.6e-093.78e-08
speciesClostridium_sp_L2_500.1329.84e-093.84e-08
speciesLachnospiraceae_bacterium_3_1_46FAA0.1311.2e-084.64e-08
speciesCoprococcus_eutactus0.131.64e-086.29e-08
speciesStreptococcus_anginosus-0.131.74e-086.62e-08
speciesLactobacillus_salivarius-0.1282.56e-089.67e-08
speciesClostridium_clostridioforme-0.1282.96e-081.11e-07
orderBacillales-0.1273.46e-081.29e-07
speciesVeillonella_dispar-0.1264.86e-081.79e-07
speciesC2likevirus_unclassified0.1255.31e-081.94e-07
speciesBacteroides_clarus0.1255.6e-082.03e-07
speciesStreptococcus_gordonii-0.1246.72e-082.42e-07
classGammaproteobacteria-0.1247.76e-082.77e-07
genusC2likevirus0.1239.47e-083.36e-07
genusCollinsella0.1239.93e-083.5e-07
orderEnterobacteriales-0.1221.24e-074.3e-07
familyEnterobacteriaceae-0.1221.24e-074.3e-07
genusBlautia-0.122e-076.87e-07
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.122.01e-076.87e-07
speciesVeillonella_unclassified-0.122.06e-077e-07
genusActinomyces-0.1192.29e-077.72e-07
speciesEubacterium_eligens0.1192.4e-078.03e-07
speciesRuminococcus_lactaris0.1192.68e-078.91e-07
speciesBlautia_producta-0.1183.4e-071.12e-06
speciesFusobacterium_ulcerans-0.1173.74e-071.23e-06
speciesStreptococcus_parasanguinis-0.1164.45e-071.45e-06
speciesBacteroides_pectinophilus0.1164.49e-071.45e-06
familyOscillospiraceae0.1164.9e-071.56e-06
genusOscillibacter0.1164.9e-071.56e-06
classClostridia0.1165.11e-071.61e-06
orderClostridiales0.1165.11e-071.61e-06
familyBacteroidaceae-0.1165.37e-071.67e-06
genusBacteroides-0.1165.37e-071.67e-06
speciesFusobacterium_nucleatum-0.1156.49e-072e-06
speciesClostridium_leptum0.1156.76e-072.07e-06
speciesEscherichia_coli-0.1147.24e-072.2e-06
familyActinomycetaceae-0.1147.37e-072.23e-06
speciesOdoribacter_laneus0.1147.75e-072.33e-06
genusEscherichia-0.1138.71e-072.6e-06
speciesAnaerostipes_unclassified-0.1139.98e-072.96e-06
speciesBacteroides_caccae0.1131.02e-063.01e-06
speciesBifidobacterium_angulatum0.1121.09e-063.2e-06
speciesOscillibacter_unclassified0.1121.23e-063.58e-06
speciesLachnospiraceae_bacterium_5_1_57FAA-0.1121.27e-063.68e-06
orderActinomycetales-0.1111.61e-064.63e-06
speciesLachnospiraceae_bacterium_2_1_58FAA-0.111.75e-065.01e-06
speciesBacteroides_cellulosilyticus0.111.8e-065.12e-06
speciesFusobacterium_varium-0.111.85e-065.23e-06
speciesDialister_invisus-0.1092.1e-065.9e-06
speciesCoprococcus_comes0.1092.28e-066.36e-06
speciesPrevotella_copri0.1092.29e-066.36e-06
familyClostridiaceae-0.1083.11e-068.58e-06
genusClostridium-0.1073.19e-068.75e-06
genusSutterellaceae_unclassified0.1073.28e-068.95e-06
genusMethanosphaera0.1064.76e-061.28e-05
speciesMethanosphaera_stadtmanae0.1064.76e-061.28e-05
genusKlebsiella-0.1046.8e-061.82e-05
speciesEubacterium_cylindroides0.1037.39e-061.97e-05
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1037.96e-062.11e-05
speciesParabacteroides_goldsteinii0.1038.78e-062.32e-05
genusParasutterella0.1029.05e-062.36e-05
speciesParasutterella_excrementihominis0.1029.05e-062.36e-05
genusPrevotella0.1029.68e-062.51e-05
speciesKlebsiella_pneumoniae-0.1011.12e-052.89e-05
speciesFusobacterium_mortiferum-0.1011.18e-053.03e-05
speciesVeillonella_atypica-0.11.4e-053.57e-05
genusErysipelotrichaceae_noname0.11.5e-053.81e-05
speciesStreptococcus_mitis_oralis_pneumoniae-0.0991.7e-054.29e-05
genusEnterococcus-0.0991.74e-054.37e-05
genusParabacteroides0.0991.85e-054.62e-05
familyMicrococcaceae-0.0991.91e-054.74e-05
genusRothia-0.0991.95e-054.82e-05
orderViruses_noname0.0982.09e-055.14e-05
speciesBifidobacterium_dentium-0.0972.63e-056.43e-05
familyEnterococcaceae-0.0972.7e-056.57e-05
familySiphoviridae0.0963.01e-057.29e-05
speciesBacteroides_eggerthii0.0953.98e-059.58e-05
speciesBifidobacterium_pseudocatenulatum-0.0944.47e-050.000107
familyVeillonellaceae-0.0945e-050.000119
speciesBacteroides_faecis0.0935.79e-050.000137
speciesRuminococcus_callidus0.0926.35e-050.00015
speciesLactobacillus_ruminis0.0926.97e-050.000164
speciesStreptococcus_mutans-0.0918.06e-050.000188
phylumViruses_noname0.0918.39e-050.000194
classViruses_noname0.0918.39e-050.000194
genusDorea0.090.00010.00023
speciesParabacteroides_johnsonii0.0890.0001120.000257
speciesPrevotella_buccae-0.0880.0001420.000324
speciesParabacteroides_distasonis0.0880.0001440.000326
genusWeissella-0.0880.0001450.000326
speciesParabacteroides_sp_20_30.0880.0001450.000326
speciesMegamonas_unclassified-0.0870.0001560.000349
genusMegamonas-0.0870.0001570.00035
speciesRothia_mucilaginosa-0.0870.0001630.000361
speciesBacteroides_coprophilus0.0870.000170.000375
familyLeuconostocaceae-0.0870.0001750.000384
speciesStreptococcus_australis-0.0870.0001770.000385
speciesRuminococcus_bromii0.0870.0001770.000385
speciesBacteroides_salyersiae0.0870.0001790.000388
speciesLactobacillus_mucosae-0.0860.0002080.000448
genusAcidaminococcaceae_unclassified0.0850.0002250.000483
speciesErysipelotrichaceae_bacterium_3_1_53-0.0850.0002430.000519
genusDialister-0.0840.0002930.000623
speciesBacteroides_ovatus-0.0830.0003110.000657
speciesClostridium_bartlettii-0.0830.0003120.000657
speciesEubacterium_ramulus0.0830.000320.000671
speciesBilophila_wadsworthia0.0830.0003350.0007
genusAcidaminococcus0.0820.0003760.000782
speciesAlistipes_sp_AP110.0810.0004850.001
speciesLactobacillus_rhamnosus-0.080.000520.00107
speciesLactobacillus_gasseri-0.080.0005330.00109
speciesLachnospiraceae_bacterium_2_1_46FAA-0.080.000560.00114
speciesAlistipes_sp_HGB50.0790.0006040.00123
speciesClostridium_asparagiforme-0.0790.0006670.00135
speciesEubacterium_rectale0.0790.0006730.00136
speciesLactobacillus_fermentum-0.0780.0007240.00145
genusBilophila0.0780.000730.00146
genusPantoea-0.0780.0007410.00147
speciesPantoea_unclassified-0.0780.0007410.00147
speciesStreptococcus_infantarius-0.0760.0009470.00187
speciesCampylobacter_concisus-0.0760.0009580.00188
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0760.001040.00204
speciesLactobacillus_crispatus-0.0760.001080.00211
classErysipelotrichia0.0750.001150.00222
orderErysipelotrichales0.0750.001150.00222
familyErysipelotrichaceae0.0750.001150.00222
speciesEubacterium_dolichum-0.0740.001330.00255
speciesBacteroides_salanitronis0.0740.001440.00274
speciesBilophila_unclassified0.0740.001440.00274
orderCaudovirales0.0740.001470.00279
genusSolobacterium-0.0730.001490.0028
speciesSolobacterium_moorei-0.0730.001490.0028
speciesEnterococcus_faecium-0.0730.001540.00288
phylumFirmicutes0.0720.001740.00325
genusPeptostreptococcaceae_noname-0.0710.002090.00388
speciesWeissella_confusa-0.0710.002130.00394
speciesRoseburia_unclassified0.0690.002650.00489
familyPeptostreptococcaceae-0.0690.00270.00496
speciesBifidobacterium_breve-0.0690.002930.00536
speciesEubacterium_ventriosum0.0680.003320.00605
familyLachnospiraceae0.0680.003350.00608
genusPeptostreptococcus-0.0680.003440.00622
genusEubacterium0.0680.003460.00623
familyEubacteriaceae0.0670.003510.0063
speciesBacteroides_dorei0.0670.003570.00638
genusClostridiales_noname-0.0670.003870.00689
familyLactobacillaceae-0.0650.005180.00919
speciesLactobacillus_vaginalis-0.0640.005280.00933
speciesLactobacillus_plantarum-0.0640.005430.00956
speciesLactococcus_phage_phi70.0630.006430.0113
speciesBacteroides_intestinalis0.0620.007560.0132
speciesBacteroides_barnesiae0.0610.008040.014
speciesAnaerotruncus_colihominis-0.0610.008390.0146
genusLactobacillus-0.060.009110.0158
speciesLactobacillus_oris-0.060.009690.0167
speciesLactococcus_phage_936_sensu_lato0.060.009910.017
speciesAcidaminococcus_unclassified0.0590.01070.0183
speciesBlautia_hydrogenotrophica-0.0590.0110.0187
speciesMegamonas_rupellensis-0.0590.01120.019
speciesErysipelotrichaceae_bacterium_21_30.0570.01350.0228
speciesClostridium_spiroforme-0.0570.01410.0238
speciesEubacterium_hallii0.0560.01620.0272
speciesGemella_morbillorum-0.0550.01690.0283
speciesWeissella_cibaria-0.0550.01780.0297
speciesBacteroides_thetaiotaomicron-0.0550.01830.0304
familyBurkholderiales_noname0.0540.01860.0308
genusLeuconostoc-0.0540.02060.0339
genusBurkholderiales_noname0.0530.02070.0339
speciesBurkholderiales_bacterium_1_1_470.0530.02070.0339
speciesLeuconostoc_lactis-0.0530.02080.034
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0530.02120.0345
genusMegasphaera-0.0530.02180.0354
genusPropionibacterium-0.0530.02280.0369
speciesKlebsiella_oxytoca-0.0530.0230.037
familyViruses_noname0.0530.02310.037
genusViruses_noname0.0530.02310.037
genusAggregatibacter-0.0520.02380.038
familyMyoviridae-0.0520.02490.0396
speciesAggregatibacter_segnis-0.0520.02590.041
speciesPeptostreptococcus_stomatis-0.0510.02790.044
speciesAcidaminococcus_fermentans0.0510.02870.0452
speciesClostridium_sp_ATCC_BAA_442-0.050.02910.0456
speciesEnterococcus_faecalis-0.050.03070.048
speciesHaemophilus_paraphrohaemolyticus-0.050.03220.0502
speciesClostridium_perfringens-0.0490.03250.0505
speciesEggerthella_sp_1_3_56FAA-0.0490.03340.0517
speciesLachnospiraceae_bacterium_8_1_57FAA0.0490.03380.0521
speciesDorea_formicigenerans0.0490.0340.0523
speciesOscillibacter_sp_KLE_17450.0490.03580.0549
speciesKlebsiella_sp_MS_92_3-0.0470.04370.0668
speciesBifidobacterium_longum-0.0470.04430.0675
speciesCollinsella_intestinalis-0.0460.04640.0704
speciesOdoribacter_unclassified0.0460.04680.0708
phylumProteobacteria-0.0460.04760.0718
speciesEnterobacter_cloacae-0.0460.04880.0734
speciesErysipelotrichaceae_bacterium_6_1_45-0.0450.04930.0739
genusMyoviridae_noname-0.0450.050.0747
speciesParabacteroides_sp_D130.0450.05150.0767
speciesEubacterium_limosum-0.0450.05240.0778
speciesBacteroides_uniformis0.0450.05260.0778
speciesSlackia_piriformis0.0450.05410.0798
speciesEscherichia_unclassified-0.0450.05430.0798
speciesLactococcus_garvieae-0.0440.05680.0833
speciesStreptococcus_pasteurianus-0.0440.05980.0874
speciesStreptococcus_lutetiensis-0.0430.06210.0905
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0430.06230.0905
speciesDialister_succinatiphilus0.0430.06480.0938
speciesKlebsiella_unclassified-0.0420.06820.0984
speciesRoseburia_inulinivorans0.0420.06890.0991
genusLachnospiraceae_noname-0.0420.06970.1
speciesPrevotella_stercorea0.0410.07290.104
speciesEubacterium_sp_3_1_31-0.0410.07320.104
genusEnterobacter-0.040.08450.12
genusGordonibacter-0.040.08540.12
speciesGordonibacter_pamelaeae-0.040.08540.12
speciesClostridium_sp_KLE_1755-0.040.08550.12
speciesCitrobacter_freundii-0.040.08560.12
speciesHaemophilus_parainfluenzae-0.040.08710.122
speciesPeptostreptococcaceae_noname_unclassified0.0390.08770.122
familyClostridiales_noname-0.0390.08830.123
genusHaemophilus-0.0390.09050.126
speciesPropionibacterium_freudenreichii-0.0390.09240.128
genusRuminococcus0.0390.09260.128
speciesHoldemania_filiformis0.0390.0940.129
speciesMegamonas_hypermegale-0.0380.09750.134
genusAnaerostipes-0.0380.09960.136
speciesBifidobacterium_animalis0.0380.1020.139
speciesBacteroides_xylanisolvens-0.0380.1020.139
genusProteus-0.0380.1030.14
speciesSutterella_parvirubra-0.0370.1110.15
speciesHoldemania_sp_AP2-0.0370.1150.155
genusPorphyromonas0.0360.1190.16
speciesBacteroides_coprocola0.0360.1240.166
speciesBacteroides_finegoldii0.0350.1250.167
genusActinobacillus-0.0340.1360.181
speciesActinobacillus_unclassified-0.0340.1360.181
speciesRuminococcus_obeum0.0340.1370.181
orderPasteurellales-0.0340.1380.181
familyPasteurellaceae-0.0340.1380.181
speciesBacteroides_massiliensis0.0340.1380.181
speciesBifidobacterium_catenulatum0.0340.1390.182
familyClostridiales_Family_XI_Incertae_Sedis-0.0340.140.183
genusFaecalibacterium0.0340.1450.189
speciesFaecalibacterium_prausnitzii0.0340.1450.189
speciesHaemophilus_sputorum-0.0340.1470.191
speciesStreptococcus_thermophilus0.0330.1510.195
speciesCollinsella_unclassified0.0320.1720.222
speciesBacteroides_stercoris-0.0310.1790.23
speciesLactobacillus_casei_paracasei-0.0310.1860.239
speciesDorea_unclassified0.030.1880.24
genusRoseburia0.030.1940.247
speciesAcidaminococcus_intestini0.0290.2040.26
familyPropionibacteriaceae-0.0290.2140.271
genusSlackia0.0290.2140.271
speciesCollinsella_tanakaei-0.0290.2170.274
genusCitrobacter-0.0280.2280.287
familyPodoviridae0.0280.2290.287
genusClostridiaceae_noname-0.0270.2350.293
speciesProteus_mirabilis-0.0270.2350.293
speciesClostridiaceae_bacterium_JC118-0.0270.2350.293
orderCoriobacteriales0.0270.2460.305
familyCoriobacteriaceae0.0270.2460.305
genusSiphoviridae_noname0.0260.2570.318
speciesEnterobacter_aerogenes-0.0260.2580.318
speciesBacteroides_sp_1_1_60.0260.2630.323
speciesCitrobacter_unclassified-0.0250.2870.351
speciesMegamonas_funiformis-0.0250.2870.351
speciesEnterobacteria_phage_HK544-0.0240.2910.355
speciesRoseburia_intestinalis0.0240.2940.358
speciesAlistipes_unclassified0.0240.30.364
speciesParabacteroides_unclassified0.0240.3090.374
speciesTuricibacter_sanguinis-0.0230.3120.377
speciesBacteroides_oleiciplenus-0.0230.3190.383
classBacteroidia-0.0230.320.383
orderBacteroidales-0.0230.320.383
phylumBacteroidetes-0.0230.3210.384
speciesLactococcus_phage_jm20.0220.3360.4
speciesPorphyromonas_asaccharolytica0.0210.3570.424
speciesSubdoligranulum_sp_4_3_54A2FAA-0.020.3760.446
speciesLactobacillus_delbrueckii-0.0190.4130.489
speciesLactococcus_phage_P6800.0190.4190.494
speciesMegasphaera_elsdenii0.0180.430.506
genusCampylobacter-0.0180.4360.512
genusPyramidobacter-0.0180.4440.519
speciesPyramidobacter_piscolens-0.0180.4440.519
speciesBacteroides_fluxus0.0170.4540.529
genusMorganella-0.0170.4620.536
speciesMorganella_morganii-0.0170.4620.536
speciesBacteroides_plebeius0.0170.4690.543
speciesTuricibacter_unclassified0.0170.4750.548
speciesPeptostreptococcus_anaerobius-0.0160.4840.557
speciesCoriobacteriaceae_bacterium_phI0.0160.4920.565
speciesRuminococcus_torques-0.0160.4930.565
genusParvimonas-0.0150.5230.595
speciesHoldemania_unclassified0.0150.5230.595
speciesParvimonas_unclassified-0.0150.5230.595
genusHoldemania-0.0140.5370.609
phylumActinobacteria-0.0140.540.61
classActinobacteria-0.0140.540.61
genusCoriobacteriaceae_noname0.0140.5460.611
genusLactococcus-0.0140.5480.611
phylumSynergistetes0.0140.5490.611
classSynergistia0.0140.5490.611
orderSynergistales0.0140.5490.611
familySynergistaceae0.0140.5490.611
speciesBacteroides_sp_4_3_47FAA-0.0140.5540.615
speciesAnaerostipes_hadrus0.0130.5630.624
speciesCoprobacillus_sp_29_1-0.0130.5840.646
speciesOscillibacter_sp_KLE_17280.0130.5870.647
classNegativicutes-0.0120.5920.648
orderSelenomonadales-0.0120.5920.648
speciesLactobacillus_sanfranciscensis-0.0120.5920.648
genusPeptoniphilus-0.0120.5930.648
genusBifidobacterium-0.0120.6180.674
genusTuricibacter0.0110.6230.678
speciesLactococcus_lactis-0.0110.6260.679
genusButyricicoccus-0.0110.6410.691
speciesButyricicoccus_pullicaecorum-0.0110.6410.691
genusTunalikevirus-0.0110.6420.691
speciesLactobacillus_acidophilus0.0110.6450.691
speciesMegasphaera_unclassified0.0110.6460.691
orderBifidobacteriales-0.0110.6470.691
familyBifidobacteriaceae-0.0110.6470.691
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0110.650.693
familyCampylobacteraceae-0.010.6750.718
orderAeromonadales-0.0090.6930.735
speciesKlebsiella_phage_KP36-0.0080.7210.763
speciesBacteroides_sp_2_1_220.0080.740.781
genusAdlercreutzia-0.0070.7580.795
speciesLactobacillus_amylovorus0.0070.7580.795
speciesAdlercreutzia_equolifaciens-0.0070.7580.795
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0070.7640.8
speciesBacteroides_nordii0.0060.7940.829
orderPseudomonadales0.0050.8290.864
speciesPorphyromonas_uenonis0.0050.8350.868
speciesPrevotella_bivia-0.0050.8420.873
genusLambdalikevirus0.0050.8440.874
speciesRuminococcus_sp_5_1_39BFAA-0.0040.8550.883
speciesLactobacillus_reuteri-0.0040.8720.899
speciesCoprobacillus_sp_D6-0.0040.8760.901
speciesBacteroides_sp_3_1_19-0.0020.9140.937
familySuccinivibrionaceae-0.0020.9170.937
speciesBacteroides_vulgatus-0.0020.9170.937
speciesBifidobacterium_bifidum0.0020.9290.947
speciesLactococcus_phage_bIL67-0.0020.9470.963
speciesStreptococcus_phage_Sfi21-0.0010.9670.982
genusSuccinatimonas-0.0010.9760.986
speciesSuccinatimonas_hippei-0.0010.9760.986
classEpsilonproteobacteria-0.0010.9810.986
orderCampylobacterales-0.0010.9810.986
genusStaphylococcus-0.0010.9820.986
familyStaphylococcaceae0.00.9950.997
speciesRuminococcus_sp_JC3040.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201146.22580591205e-050.0001222233605190.000107480525351519817.4611
Ulcerative colitisSpain78668.14580891068e-050.0001975686514820.011181932936519876.55473
Crohns diseaseSpain17666.08445334185e-060.0001975686514820.0158459733549895029.7589
Type II diabetesChina1831857.69111078027e-056.61492550085e-050.0162877726041443214.6469
ObesityDenmark1691230.0001846192962050.0002498231606820.047355320752488216.0534
Rheumatoid arthritisChina127980.0002325358333841.75351922294e-050.162774142854757625.2643
Colorectal cancerAustria64351.59201513882e-051.3196772093e-050.4366494209811588753.7522
Type II diabetesDenmark752770.000165693476250.0002122018788760.8142815518572696888.3994
Type II diabetesSweden53925.37212169553e-055.55100711709e-050.9466697548092809195.127
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382