MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-06 10:18:03 PST
Job id & description: 1550, Tryptophan Permease
Query type: protein
Count queries & homologs: 1, 76
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P23173|TNAB_ECOLI1502518CompleteK03836COG0814ProteobacteriaEscherichia100.0100.099.28
sp|P23173|TNAB_ECOLI2441524CompleteK03836COG0814ProteobacteriaEscherichia70.3689.399.66
sp|P23173|TNAB_ECOLI1518558CompleteK03835COG0814ProteobacteriaEnterobacter93.4993.053.61
sp|P23173|TNAB_ECOLI1324324CompleteK03835COG0814ProteobacteriaEnterobacter93.4987.953.61
sp|P23173|TNAB_ECOLI1779392CompleteK03835COG0814ProteobacteriaKlebsiella93.4999.7453.35
sp|P23173|TNAB_ECOLI1514111CompleteK03835COG0814ProteobacteriaEscherichia93.4993.053.61
sp|P23173|TNAB_ECOLI1516387CompleteK03835COG0814ProteobacteriaEnterobacter93.4993.053.09
sp|P23173|TNAB_ECOLI1518703CompleteK03835COG0814ProteobacteriaEscherichia93.4993.053.61
sp|P23173|TNAB_ECOLI1513136CompleteK03835COG0814ProteobacteriaKlebsiella93.4993.053.09
sp|P23173|TNAB_ECOLI1517405CompleteK03835COG0814ProteobacteriaEnterobacter93.4993.053.09
sp|P23173|TNAB_ECOLI1518627CompleteK03835COG0814ProteobacteriaCitrobacter93.4993.053.87
sp|P23173|TNAB_ECOLI1512975CompleteK03835COG0814ProteobacteriaKlebsiella93.4993.052.84
sp|P23173|TNAB_ECOLI1518548CompleteK03835COG0814ProteobacteriaEscherichia93.4993.053.09
sp|P23173|TNAB_ECOLI1514429CompleteK03835COG0814ProteobacteriaCitrobacter89.488.8955.53
sp|P23173|TNAB_ECOLI1510941CompleteK03835COG0814ProteobacteriaEscherichia93.4993.053.35
sp|P23173|TNAB_ECOLI1417817CompleteK03835COG0814ProteobacteriaEnterobacter93.4990.3852.84
sp|P23173|TNAB_ECOLI1518512CompleteK03835COG0814ProteobacteriaCitrobacter93.4993.053.35
sp|P23173|TNAB_ECOLI1512933CompleteK03835COG0814ProteobacteriaEscherichia93.4993.053.09
sp|P23173|TNAB_ECOLI1479561CompleteK03835COG0814ProteobacteriaKlebsiella93.2591.8753.61
sp|P23173|TNAB_ECOLI1427039CompleteK03835COG0814ProteobacteriaCitrobacter93.2590.3552.97
sp|P23173|TNAB_ECOLI1516986CompleteK03835COG0814ProteobacteriaEnterobacter93.4993.051.8
sp|P23173|TNAB_ECOLI1515234CompleteK03835COG0814ProteobacteriaKlebsiella93.4993.051.8
sp|P23173|TNAB_ECOLI1516824CompleteK03835COG0814ProteobacteriaKlebsiella93.4993.051.55
sp|P23173|TNAB_ECOLI1512532CompleteK03835COG0814ProteobacteriaKlebsiella93.4993.051.8
sp|P23173|TNAB_ECOLI1921367Lack 3'-endK03835COG0814ProteobacteriaCitrobacter83.6192.4756.48
sp|P23173|TNAB_ECOLI2114336Lack both endsK03835COG0814ProteobacteriaKlebsiella83.3796.8955.04
sp|P23173|TNAB_ECOLI1507638CompleteK03835COG0814unknownunknown98.3197.5944.85
sp|P23173|TNAB_ECOLI1502003CompleteK03835COG0814Proteobacteriaunknown99.0497.8444.53
sp|P23173|TNAB_ECOLI1523863CompleteK03835COG0814ProteobacteriaProteus97.8397.3446.81
sp|P23173|TNAB_ECOLI2098687Lack 3'-endK03835COG0814ProteobacteriaEnterobacter79.7692.1354.68
sp|P23173|TNAB_ECOLI1485472CompleteK03835COG0814ProteobacteriaHaemophilus96.3996.6546.17
sp|P23173|TNAB_ECOLI1518744CompleteK03835COG0814ProteobacteriaAggregatibacter94.4694.6948.73
sp|P23173|TNAB_ECOLI1483664CompleteK03835COG0814ProteobacteriaHaemophilus96.3996.6546.17
sp|P23173|TNAB_ECOLI1479325CompleteK03835COG0814ProteobacteriaHaemophilus96.3996.6545.93
sp|P23173|TNAB_ECOLI1679596Lack 3'-endK03835COG0814ProteobacteriaHaemophilus93.9899.2446.08
sp|P23173|TNAB_ECOLI1518644CompleteK03835COG0814ProteobacteriaProvidencia94.4693.9646.56
sp|P23173|TNAB_ECOLI1449703CompleteK03835COG0814unknownunknown96.6395.9743.95
sp|P23173|TNAB_ECOLI1460878CompleteK03835COG0814ProteobacteriaCitrobacter99.2899.0542.69
sp|P23173|TNAB_ECOLI1468894CompleteK03835COG0814ProteobacteriaCitrobacter99.2899.0542.79
sp|P23173|TNAB_ECOLI1877436Lack 3'-endK03835COG0814ProteobacteriaHaemophilus89.1699.246.13
sp|P23173|TNAB_ECOLI1748693Lack 5'-endK03835COG0814ProteobacteriaHaemophilus89.496.445.74
sp|P23173|TNAB_ECOLI1369832CompleteK03835COG0814ProteobacteriaProvidencia99.2895.3742.13
sp|P23173|TNAB_ECOLI1344333CompleteK03835COG0814ProteobacteriaBilophila96.6392.1839.4
sp|P23173|TNAB_ECOLI1569665CompleteK03835COG0814ProteobacteriaDesulfovibrio96.6397.340.55
sp|P23173|TNAB_ECOLI2273713Lack 5'-endK03835COG0814ProteobacteriaHaemophilus78.3196.7643.94
sp|P23173|TNAB_ECOLI2616170Lack 3'-endK03835COG0814unknownunknown73.4996.8345.42
sp|P23173|TNAB_ECOLI1562427CompleteK03835COG0814ProteobacteriaDesulfovibrio98.5598.2837.96
sp|P23173|TNAB_ECOLI1549889CompleteK03835COG0814ProteobacteriaHaemophilus98.5599.2738.16
sp|P23173|TNAB_ECOLI1559721CompleteK03835COG0814unknownunknown98.5597.0734.63
sp|P23173|TNAB_ECOLI1520618CompleteK03834COG0814ProteobacteriaKlebsiella98.3197.3430.56
sp|P23173|TNAB_ECOLI1614283CompleteK03834COG0814ProteobacteriaCitrobacter98.3199.7532.68
sp|P23173|TNAB_ECOLI1607928CompleteK03834COG0814ProteobacteriaKlebsiella98.3199.7532.2
sp|P23173|TNAB_ECOLI1612346CompleteK03834COG0814ProteobacteriaKlebsiella98.3199.7530.32
sp|P23173|TNAB_ECOLI1535205CompleteK03834COG0814ProteobacteriaEscherichia99.2898.5431.55
sp|P23173|TNAB_ECOLI1535169CompleteK03834COG0814ProteobacteriaCitrobacter99.2898.5432.77
sp|P23173|TNAB_ECOLI1519545Lack 5'-endK03834COG0814ProteobacteriaEscherichia99.2898.3132.61
sp|P23173|TNAB_ECOLI1427172CompleteK03834COG0814ProteobacteriaProvidencia99.2895.7632.06
sp|P23173|TNAB_ECOLI1763349CompleteK03835COG0814Proteobacteriaunknown91.3396.6431.15
sp|P23173|TNAB_ECOLI1778541CompleteK03835COG0814ProteobacteriaEnterobacter91.5797.1531.5
sp|P23173|TNAB_ECOLI1621308CompleteK03834COG0814ProteobacteriaProvidencia98.3199.7531.37
sp|P23173|TNAB_ECOLI1614185CompleteK03834COG0814ProteobacteriaKlebsiella98.3199.7530.81
sp|P23173|TNAB_ECOLI1837749CompleteK03834COG0814ProteobacteriaKlebsiella93.01100.032.22
sp|P23173|TNAB_ECOLI1779397CompleteK03835COG0814ProteobacteriaEnterobacter89.494.8231.18
sp|P23173|TNAB_ECOLI1612941CompleteK03834COG0814ProteobacteriaEnterobacter98.3199.7530.88
sp|P23173|TNAB_ECOLI1612853CompleteK03834COG0814ProteobacteriaEnterobacter98.3199.7530.64
sp|P23173|TNAB_ECOLI1614210CompleteK03834COG0814ProteobacteriaEnterobacter98.3199.7530.64
sp|P23173|TNAB_ECOLI1518491CompleteK03834COG0814ProteobacteriaEnterobacter98.3197.130.15
sp|P23173|TNAB_ECOLI1649968Lack 5'-endK03834COG0814ProteobacteriaHaemophilus92.5394.9930.39
sp|P23173|TNAB_ECOLI1620374Lack 3'-endK03834COG0814unknownunknown95.6696.7731.0
sp|P23173|TNAB_ECOLI1605202CompleteK03834COG0814ProteobacteriaHaemophilus89.490.5930.65
sp|P23173|TNAB_ECOLI1602878CompleteK03834COG0814ProteobacteriaHaemophilus89.490.5930.91
sp|P23173|TNAB_ECOLI1605372CompleteK03834COG0814ProteobacteriaAggregatibacter89.490.5930.65
sp|P23173|TNAB_ECOLI1605382CompleteK03834COG0814ProteobacteriaHaemophilus89.490.5930.65
sp|P23173|TNAB_ECOLI1603868CompleteK03834COG0814ProteobacteriaHaemophilus89.490.5930.11
sp|P23173|TNAB_ECOLI1611083CompleteK03834COG0814ProteobacteriaProteus98.3199.7530.81
sp|P23173|TNAB_ECOLI1578818CompleteK03834COG0814ProteobacteriaAggregatibacter91.5792.1430.23
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumProteobacteria0.8170.00.0
classGammaproteobacteria0.9310.00.0
orderEnterobacteriales0.9010.00.0
familyEnterobacteriaceae0.9010.00.0
genusEscherichia0.8450.00.0
speciesEscherichia_coli0.8230.00.0
genusKlebsiella0.5813.36e-1692.27e-167
speciesKlebsiella_pneumoniae0.567.8e-1554.6e-153
speciesEscherichia_unclassified0.5262.54e-1331.33e-131
genusPantoea0.4582.12e-979.1e-96
speciesPantoea_unclassified0.4582.12e-979.1e-96
genusEnterobacter0.3942.42e-709.52e-69
speciesEnterobacter_cloacae0.3876.11e-682.22e-66
familyFusobacteriaceae0.3811.52e-655.12e-64
phylumFusobacteria0.3773.19e-648.86e-63
classFusobacteriia0.3773.19e-648.86e-63
orderFusobacteriales0.3773.19e-648.86e-63
genusFusobacterium0.3765.24e-641.37e-62
speciesRuminococcus_gnavus0.3481.96e-544.87e-53
speciesSubdoligranulum_unclassified-0.3361.64e-503.87e-49
genusSubdoligranulum-0.331.12e-482.52e-47
genusCitrobacter0.3291.76e-483.78e-47
speciesClostridium_nexile0.3261.26e-472.59e-46
speciesCitrobacter_unclassified0.3161.48e-442.91e-43
speciesCitrobacter_freundii0.3112.41e-434.55e-42
speciesEubacterium_siraeum-0.3012.07e-403.76e-39
speciesClostridium_bolteae0.2963.8e-396.64e-38
speciesMegasphaera_micronuciformis0.2813.36e-355.66e-34
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2781.6e-342.6e-33
speciesAnaerotruncus_unclassified-0.2716.04e-339.5e-32
speciesKlebsiella_oxytoca0.271.65e-322.51e-31
speciesClostridium_hathewayi0.2691.83e-322.7e-31
genusCoprococcus-0.2675.27e-327.54e-31
speciesVeillonella_parvula0.2652.05e-312.85e-30
speciesEubacterium_ramulus-0.2621.21e-301.63e-29
genusMegasphaera0.2611.57e-302.06e-29
genusCoprobacillus0.2611.67e-302.13e-29
familyRuminococcaceae-0.2611.81e-302.25e-29
genusButyrivibrio-0.2612.04e-302.47e-29
speciesClostridium_perfringens0.262.74e-303.23e-29
genusVeillonella0.263.57e-304.11e-29
classClostridia-0.2513.2e-283.51e-27
orderClostridiales-0.2513.2e-283.51e-27
speciesClostridium_symbiosum0.255.7e-286.11e-27
genusPseudoflavonifractor-0.2496.55e-286.72e-27
speciesPseudoflavonifractor_capillosus-0.2496.55e-286.72e-27
speciesFusobacterium_nucleatum0.2496.78e-286.81e-27
speciesCoprobacillus_unclassified0.2497.1e-286.98e-27
speciesLactobacillus_salivarius0.2463.93e-273.79e-26
speciesClostridium_leptum-0.2455.94e-275.61e-26
speciesBifidobacterium_adolescentis-0.2431.45e-261.34e-25
speciesClostridium_ramosum0.2431.8e-261.63e-25
speciesCoprococcus_comes-0.2399.3e-268.28e-25
speciesFusobacterium_ulcerans0.2391.02e-258.92e-25
genusHaemophilus0.2391.05e-259.01e-25
speciesHaemophilus_parainfluenzae0.2391.27e-251.07e-24
orderPasteurellales0.2381.5e-251.22e-24
familyPasteurellaceae0.2381.5e-251.22e-24
speciesKlebsiella_unclassified0.2372.38e-251.9e-24
speciesFusobacterium_mortiferum0.2363.69e-252.9e-24
speciesEubacterium_rectale-0.2331.9e-241.47e-23
speciesDorea_longicatena-0.2313.78e-242.88e-23
genusWeissella0.2313.97e-242.97e-23
speciesVeillonella_dispar0.2314.04e-242.98e-23
speciesVeillonella_unclassified0.2299.2e-246.68e-23
speciesBacteroides_fragilis0.2258.04e-235.75e-22
genusEubacterium-0.2222.18e-221.52e-21
familyEubacteriaceae-0.2222.19e-221.52e-21
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2213.33e-222.28e-21
speciesWeissella_confusa0.2213.53e-222.38e-21
genusDorea-0.2198.63e-225.74e-21
speciesStreptococcus_anginosus0.2198.85e-225.8e-21
familyClostridiaceae0.2181.67e-211.08e-20
speciesEubacterium_hallii-0.2162.98e-211.9e-20
genusClostridium0.2163.44e-212.16e-20
genusBarnesiella-0.2155.71e-213.5e-20
speciesBarnesiella_intestinihominis-0.2155.71e-213.5e-20
speciesMegamonas_unclassified0.2122.21e-201.34e-19
genusActinobacillus0.2112.48e-201.46e-19
speciesActinobacillus_unclassified0.2112.48e-201.46e-19
genusMegamonas0.2112.89e-201.68e-19
speciesLactobacillus_mucosae0.2097.95e-204.58e-19
speciesCoprococcus_catus-0.2081.1e-196.26e-19
genusAggregatibacter0.2071.26e-197.08e-19
speciesClostridiales_bacterium_1_7_47FAA0.2062.01e-191.12e-18
genusEnterococcus0.2062.74e-191.5e-18
speciesFusobacterium_varium0.2054.14e-192.25e-18
orderLactobacillales0.2044.35e-192.33e-18
familyEnterococcaceae0.2045.91e-193.13e-18
classBacilli0.2037.83e-194.11e-18
speciesAnaerostipes_hadrus-0.2029.94e-195.16e-18
speciesPrevotella_buccae0.2021.22e-186.26e-18
familyBacteroidales_noname-0.2011.53e-187.6e-18
genusBacteroidales_noname-0.2011.53e-187.6e-18
speciesBacteroidales_bacterium_ph8-0.2011.53e-187.6e-18
speciesClostridium_citroniae0.1993.17e-181.56e-17
speciesButyrivibrio_unclassified-0.1977.04e-183.43e-17
genusFlavonifractor0.1961.17e-175.58e-17
speciesFlavonifractor_plautii0.1961.17e-175.58e-17
speciesStreptococcus_infantarius0.1961.32e-176.23e-17
speciesMitsuokella_unclassified-0.1961.36e-176.36e-17
phylumVerrucomicrobia-0.1925.12e-172.26e-16
classVerrucomicrobiae-0.1925.12e-172.26e-16
orderVerrucomicrobiales-0.1925.12e-172.26e-16
familyVerrucomicrobiaceae-0.1925.12e-172.26e-16
genusAkkermansia-0.1925.12e-172.26e-16
speciesAkkermansia_muciniphila-0.1925.12e-172.26e-16
phylumFirmicutes-0.1925.84e-172.55e-16
speciesStreptococcus_thermophilus-0.1882.73e-161.18e-15
speciesLactococcus_garvieae0.1873.05e-161.31e-15
genusMitsuokella-0.1873.45e-161.47e-15
speciesRoseburia_hominis-0.1874.12e-161.74e-15
speciesBacteroides_uniformis-0.1864.76e-161.99e-15
speciesVeillonella_atypica0.1865.94e-162.46e-15
speciesCollinsella_aerofaciens-0.1856.6e-162.71e-15
speciesC2likevirus_unclassified-0.1857.2e-162.93e-15
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1841.02e-154.11e-15
speciesCampylobacter_concisus0.1841.04e-154.16e-15
speciesBacteroides_stercoris0.1841.05e-154.16e-15
genusC2likevirus-0.1831.8e-157.08e-15
speciesWeissella_cibaria0.1822.15e-158.39e-15
speciesEnterobacter_aerogenes0.1813.62e-151.4e-14
genusCollinsella-0.1796.34e-152.43e-14
classDeltaproteobacteria0.1787.55e-152.83e-14
orderDesulfovibrionales0.1787.55e-152.83e-14
familyDesulfovibrionaceae0.1787.55e-152.83e-14
speciesBifidobacterium_dentium0.1761.58e-145.86e-14
speciesAggregatibacter_segnis0.1761.59e-145.86e-14
speciesRuminococcus_sp_5_1_39BFAA-0.1761.64e-146e-14
genusCampylobacter0.1761.82e-146.58e-14
genusRuminococcaceae_noname-0.1761.84e-146.58e-14
speciesRuminococcaceae_bacterium_D16-0.1761.84e-146.58e-14
speciesEnterococcus_faecalis0.1761.86e-146.6e-14
familyLeuconostocaceae0.1752.48e-148.74e-14
familyCampylobacteraceae0.1752.67e-149.34e-14
speciesDorea_formicigenerans-0.1752.88e-141e-13
speciesSutterella_wadsworthensis-0.1743.54e-141.22e-13
classEpsilonproteobacteria0.1743.82e-141.3e-13
orderCampylobacterales0.1743.82e-141.3e-13
genusCoprobacter-0.1743.95e-141.32e-13
speciesCoprobacter_fastidiosus-0.1743.95e-141.32e-13
genusAnaerotruncus-0.1734.64e-141.54e-13
familyRikenellaceae-0.1734.85e-141.59e-13
genusAlistipes-0.1734.85e-141.59e-13
speciesBacteroides_plebeius0.1718.77e-142.85e-13
genusPrevotella0.1692.17e-137.02e-13
speciesEggerthella_unclassified0.1673.53e-131.13e-12
speciesOscillibacter_unclassified-0.1665.43e-131.73e-12
genusBilophila0.1665.67e-131.8e-12
speciesStreptococcus_salivarius0.1665.84e-131.84e-12
speciesBilophila_unclassified0.1656.62e-132.07e-12
genusSutterella-0.1621.87e-125.81e-12
familyOscillospiraceae-0.163.15e-129.65e-12
genusOscillibacter-0.163.15e-129.65e-12
speciesCoprococcus_sp_ART55_1-0.1587.22e-122.2e-11
genusEggerthella0.1577.46e-122.26e-11
speciesHaemophilus_paraphrohaemolyticus0.1578.08e-122.43e-11
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1561.04e-113.11e-11
genusRuminococcus-0.1561.15e-113.41e-11
familyBacillales_noname0.1561.28e-113.75e-11
genusGemella0.1561.28e-113.75e-11
speciesPrevotella_copri0.1551.49e-114.34e-11
speciesStreptococcus_mitis_oralis_pneumoniae0.1542.07e-115.99e-11
speciesHaemophilus_sputorum0.1542.2e-116.32e-11
familyStreptococcaceae0.1542.21e-116.32e-11
genusClostridiales_noname0.1532.52e-117.17e-11
speciesAlistipes_shahii-0.1532.55e-117.21e-11
phylumSynergistetes0.1532.84e-117.84e-11
classSynergistia0.1532.84e-117.84e-11
orderSynergistales0.1532.84e-117.84e-11
familySynergistaceae0.1532.84e-117.84e-11
genusPyramidobacter0.1533.27e-118.92e-11
speciesPyramidobacter_piscolens0.1533.27e-118.92e-11
speciesMethanobrevibacter_smithii-0.1524e-111.09e-10
speciesBacteroides_thetaiotaomicron0.1515.06e-111.36e-10
familyLactobacillaceae0.1515.11e-111.37e-10
genusLactobacillus0.156.61e-111.76e-10
speciesAlistipes_senegalensis-0.157.05e-111.87e-10
genusMethanobrevibacter-0.1498.46e-112.23e-10
phylumEuryarchaeota-0.1498.74e-112.29e-10
genusOdoribacter-0.1481.42e-103.7e-10
genusStreptococcus0.1471.49e-103.86e-10
orderCoriobacteriales-0.1471.61e-104.13e-10
familyCoriobacteriaceae-0.1471.61e-104.13e-10
genusMorganella0.1471.69e-104.29e-10
speciesMorganella_morganii0.1471.69e-104.29e-10
speciesButyrivibrio_crossotus-0.1471.84e-104.64e-10
classMethanobacteria-0.1461.96e-104.87e-10
orderMethanobacteriales-0.1461.96e-104.87e-10
familyMethanobacteriaceae-0.1461.96e-104.87e-10
speciesAlistipes_putredinis-0.1434.9e-101.21e-09
speciesKlebsiella_sp_MS_92_30.1435.45e-101.34e-09
speciesBilophila_wadsworthia0.1435.52e-101.35e-09
speciesPrevotella_stercorea0.1427.73e-101.88e-09
speciesAnaerostipes_unclassified0.1419.6e-102.32e-09
speciesMegamonas_rupellensis0.1411.03e-092.48e-09
familySiphoviridae-0.1391.62e-093.88e-09
speciesLachnospiraceae_bacterium_2_1_46FAA0.1391.69e-094.01e-09
speciesMegasphaera_unclassified0.1391.69e-094.01e-09
speciesMegamonas_hypermegale0.1382.02e-094.77e-09
speciesStreptococcus_lutetiensis0.1382.12e-094.98e-09
genusAdlercreutzia-0.1372.57e-095.98e-09
speciesAdlercreutzia_equolifaciens-0.1372.57e-095.98e-09
speciesOdoribacter_splanchnicus-0.1372.68e-096.2e-09
speciesBacteroides_intestinalis0.1373.01e-096.93e-09
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genusProteus0.1247.96e-081.69e-07
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speciesOdoribacter_unclassified-0.1183.18e-076.47e-07
speciesBacteroides_nordii0.1183.23e-076.54e-07
familyPropionibacteriaceae-0.1173.53e-077.12e-07
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speciesMegamonas_funiformis0.1173.99e-077.98e-07
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speciesLachnospiraceae_bacterium_5_1_63FAA-0.1131.01e-061.99e-06
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speciesBacteroides_coprocola0.1073.5e-066.74e-06
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speciesStreptococcus_pasteurianus0.1064.16e-067.95e-06
speciesRoseburia_unclassified-0.1064.29e-068.16e-06
speciesOlsenella_unclassified-0.1064.76e-069.01e-06
speciesEnterobacteria_phage_HK5440.1064.77e-069.01e-06
speciesLactobacillus_sanfranciscensis0.1055.39e-061.01e-05
familyMicrococcaceae0.1055.56e-061.04e-05
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genusBlautia0.1037.32e-061.36e-05
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familyPorphyromonadaceae-0.1038.32e-061.53e-05
speciesAcidaminococcus_intestini0.1021.04e-051.91e-05
speciesCoprococcus_eutactus-0.1011.16e-052.12e-05
speciesBifidobacterium_catenulatum-0.1011.19e-052.17e-05
genusPeptostreptococcaceae_noname0.11.43e-052.6e-05
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classActinobacteria-0.11.48e-052.67e-05
speciesLactobacillus_oris0.11.49e-052.67e-05
speciesLactobacillus_crispatus0.0991.66e-052.97e-05
speciesPropionibacterium_freudenreichii-0.0991.98e-053.53e-05
genusBifidobacterium-0.0982.16e-053.83e-05
speciesLactobacillus_vaginalis0.0972.42e-054.28e-05
speciesBacteroides_xylanisolvens0.0972.48e-054.37e-05
speciesGemella_morbillorum0.0972.55e-054.47e-05
speciesLactobacillus_amylovorus0.0953.58e-056.26e-05
genusAcidaminococcaceae_unclassified-0.0953.84e-056.65e-05
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speciesLactococcus_phage_P680-0.0953.86e-056.65e-05
speciesParaprevotella_xylaniphila-0.0944.97e-058.53e-05
speciesAlistipes_sp_HGB5-0.0926.24e-050.000107
speciesClostridium_bartlettii0.0926.64e-050.000113
speciesClostridium_asparagiforme0.0926.82e-050.000116
genusPropionibacterium-0.0918.39e-050.000142
speciesParabacteroides_goldsteinii0.0918.82e-050.000149
speciesLactobacillus_gasseri0.099.11e-050.000153
genusSiphoviridae_noname-0.0890.0001130.000189
speciesBacteroides_sp_3_1_190.0890.0001220.000203
speciesBacteroides_oleiciplenus0.0880.0001480.000246
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speciesRoseburia_intestinalis-0.0870.0001730.000286
genusLambdalikevirus0.0870.0001780.000293
speciesParaprevotella_unclassified-0.0860.0001860.000305
speciesRuminococcus_bromii-0.0860.0001960.00032
speciesAlistipes_sp_AP11-0.0860.0001970.000321
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speciesLachnospiraceae_bacterium_1_4_56FAA0.0850.0002370.000383
speciesBifidobacterium_longum-0.0850.0002390.000385
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speciesBifidobacterium_animalis-0.0840.0002550.000408
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genusCatenibacterium-0.0840.0002610.000413
speciesCatenibacterium_mitsuokai-0.0840.0002610.000413
speciesMethanobrevibacter_unclassified-0.0840.000270.000426
familyClostridiales_Family_XI_Incertae_Sedis0.0830.0003130.000492
speciesLactococcus_lactis-0.0830.0003180.000499
speciesBacteroides_finegoldii0.0830.0003550.000555
speciesStreptococcus_sanguinis0.0820.00040.000623
genusActinomyces0.080.0004950.000769
familyBacteroidaceae0.080.0005320.000821
genusBacteroides0.080.0005320.000821
speciesOscillibacter_sp_KLE_1728-0.0780.0006880.00106
speciesAlistipes_unclassified-0.0780.00070.00107
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genusDialister-0.0780.0007220.0011
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speciesStreptococcus_mutans0.0770.0008510.00128
speciesParaprevotella_clara-0.0770.0009050.00136
speciesMegasphaera_elsdenii0.0760.001070.0016
speciesEubacterium_biforme-0.0750.001120.00167
speciesAlistipes_finegoldii-0.0750.001210.0018
genusPhascolarctobacterium-0.0740.001270.00188
speciesPhascolarctobacterium_succinatutens-0.0740.001270.00188
speciesLactobacillus_acidophilus-0.0740.001310.00193
speciesPorphyromonas_uenonis0.0740.001350.00199
speciesClostridium_sp_ATCC_BAA_4420.0740.001440.00211
familyAcidaminococcaceae-0.0730.001590.00232
speciesDialister_invisus-0.0730.001590.00232
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speciesParabacteroides_merdae-0.0730.001650.00239
speciesAnaerotruncus_colihominis0.0730.001670.00241
familySutterellaceae-0.0720.001840.00265
speciesBlautia_producta0.0720.001940.00278
speciesEubacterium_limosum0.0710.002020.00289
speciesOscillibacter_sp_KLE_1745-0.0710.002060.00294
speciesLactobacillus_plantarum0.070.002330.00331
genusMyoviridae_noname0.0690.002750.0039
speciesBacteroides_pectinophilus-0.0690.003020.00427
speciesLachnospiraceae_bacterium_5_1_57FAA0.0680.003310.00466
speciesBacteroides_sp_1_1_6-0.0680.003430.00482
speciesAcidaminococcus_unclassified-0.0670.00350.0049
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genusGordonibacter-0.0650.00490.0068
speciesGordonibacter_pamelaeae-0.0650.00490.0068
phylumViruses_noname-0.0640.005620.00776
classViruses_noname-0.0640.005620.00776
speciesCoprobacillus_sp_D60.0640.005830.00802
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speciesDesulfovibrio_piger0.0640.005870.00803
speciesLactococcus_phage_936_sensu_lato-0.0630.006080.00829
orderAeromonadales0.0620.007130.00968
speciesBifidobacterium_angulatum-0.0620.007140.00968
speciesBifidobacterium_breve0.0620.007470.0101
genusParvimonas0.0610.008720.0118
speciesParvimonas_unclassified0.0610.008820.0118
speciesCollinsella_tanakaei0.0610.008820.0118
speciesBacteroides_massiliensis0.0590.01050.014
speciesBacteroides_eggerthii0.0580.01160.0155
speciesBacteroides_coprophilus0.0580.01240.0165
genusPeptoniphilus0.0580.01250.0166
classBetaproteobacteria-0.0570.01430.0189
speciesBacteroides_salanitronis-0.0570.01440.019
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speciesLactobacillus_reuteri0.0550.01790.0235
speciesEubacterium_eligens-0.0540.01860.0243
genusDesulfovibrio0.0540.020.0261
speciesSutterella_parvirubra0.0540.02020.0263
speciesClostridium_spiroforme-0.0530.02160.028
familyOxalobacteraceae-0.0530.02280.0294
speciesCoprobacillus_sp_29_10.0530.02280.0294
speciesStreptococcus_parasanguinis0.0520.02390.0307
speciesBacteroides_sp_2_1_22-0.0520.02550.0327
genusOxalobacter-0.0510.02760.0352
speciesOxalobacter_formigenes-0.0510.02760.0352
speciesParabacteroides_sp_D13-0.0510.02780.0354
speciesHoldemania_unclassified-0.050.0290.0368
genusTunalikevirus0.050.02910.0368
speciesEubacterium_cylindroides-0.050.03210.0405
genusLeuconostoc0.0490.03490.0439
speciesBacteroides_barnesiae-0.0470.04210.0528
speciesBacteroides_cellulosilyticus-0.0470.04340.0543
speciesLactococcus_phage_jm2-0.0460.04640.0579
genusPorphyromonas0.0450.04970.0619
speciesLactobacillus_casei_paracasei-0.0450.05180.0643
genusRoseburia-0.0450.05270.0653
speciesLactobacillus_ruminis-0.0440.05890.0728
speciesKlebsiella_phage_KP360.0430.06390.0787
speciesEggerthella_lenta0.0420.06660.0819
speciesLachnospiraceae_bacterium_1_1_57FAA0.0420.07130.0874
speciesBacteroides_dorei-0.0420.07220.0883
speciesParabacteroides_unclassified0.0410.07520.0917
speciesHoldemania_sp_AP20.0410.07580.0922
speciesLactococcus_phage_phi7-0.0410.07610.0923
speciesEubacterium_dolichum0.0390.09090.11
speciesBacteroides_faecis0.0380.1020.123
speciesClostridium_sp_KLE_1755-0.0380.1030.124
speciesPrevotella_bivia0.0380.1040.125
speciesBacteroides_caccae0.0370.1060.127
speciesLactococcus_phage_bIL67-0.0350.1320.158
speciesParabacteroides_johnsonii0.0350.1330.159
speciesMitsuokella_multacida-0.0340.1420.169
speciesPorphyromonas_asaccharolytica0.0340.1430.17
speciesParabacteroides_distasonis0.0340.1470.174
genusParabacteroides-0.0320.1620.191
genusMethanosphaera-0.0320.1710.2
speciesMethanosphaera_stadtmanae-0.0320.1710.2
classErysipelotrichia0.0320.1720.2
orderErysipelotrichales0.0320.1720.2
familyErysipelotrichaceae0.0320.1720.2
speciesParabacteroides_sp_20_3-0.0310.1770.206
genusHoldemania-0.0310.1860.216
genusBurkholderiales_noname0.030.1920.221
speciesTuricibacter_unclassified-0.030.1920.221
speciesBurkholderiales_bacterium_1_1_470.030.1920.221
speciesCoriobacteriaceae_bacterium_phI-0.030.1970.226
genusAcidaminococcus0.0290.2080.238
genusParasutterella0.0280.2260.258
speciesParasutterella_excrementihominis0.0280.2260.258
speciesBacteroides_ovatus0.0280.230.262
genusLachnospiraceae_noname-0.0280.2330.264
familyBurkholderiales_noname0.0270.2360.266
speciesLactobacillus_delbrueckii-0.0270.2360.266
genusCoriobacteriaceae_noname-0.0270.240.27
genusLactococcus-0.0270.2470.277
speciesBacteroides_clarus0.0270.2470.277
genusTuricibacter-0.0270.2510.281
speciesBifidobacterium_bifidum-0.0260.2540.283
genusButyricicoccus0.0260.2560.284
speciesButyricicoccus_pullicaecorum0.0260.2560.284
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0260.2610.289
genusStaphylococcus-0.0240.3030.335
speciesPeptostreptococcaceae_noname_unclassified-0.0230.3120.344
speciesDorea_unclassified-0.0230.3140.345
speciesEggerthella_sp_1_3_56FAA-0.0230.3270.359
speciesDesulfovibrio_desulfuricans-0.0220.3370.369
speciesSlackia_piriformis-0.0210.3570.39
speciesEubacterium_sp_3_1_31-0.020.3890.424
familyPodoviridae0.0190.4060.442
speciesRuminococcus_torques-0.0190.4070.442
speciesPeptostreptococcus_anaerobius0.0190.420.454
speciesRuminococcus_callidus-0.0190.420.454
familyViruses_noname0.0180.4410.474
genusViruses_noname0.0180.4410.474
orderViruses_noname-0.0180.4460.478
speciesCollinsella_intestinalis0.0180.4470.478
genusSutterellaceae_unclassified-0.0180.4480.478
speciesRoseburia_inulinivorans-0.0180.4490.478
genusClostridiaceae_noname0.0170.4740.503
speciesClostridiaceae_bacterium_JC1180.0170.4740.503
speciesBacteroides_sp_4_3_47FAA0.0160.4760.504
speciesErysipelotrichaceae_bacterium_3_1_530.0150.5090.537
speciesErysipelotrichaceae_bacterium_2_2_44A0.0140.5350.564
speciesDialister_succinatiphilus-0.0140.5440.572
familyStaphylococcaceae-0.0140.5550.582
speciesErysipelotrichaceae_bacterium_6_1_45-0.0120.6020.629
genusButyricimonas0.0120.6040.629
speciesButyricimonas_synergistica0.0120.6040.629
speciesBacteroides_fluxus-0.0120.6160.64
speciesBacteroides_vulgatus0.0120.6190.642
speciesCollinsella_unclassified-0.010.680.704
genusSlackia0.0090.6960.719
speciesLactobacillus_rhamnosus-0.0090.6980.719
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0090.7080.728
speciesSubdoligranulum_sp_4_3_54A2FAA0.0080.7170.736
genusErysipelotrichaceae_noname0.0070.7760.795
speciesRuminococcus_sp_JC304-0.0060.7920.809
orderPseudomonadales0.0060.8010.817
speciesOdoribacter_laneus-0.0030.8870.901
speciesStreptococcus_phage_Sfi21-0.0030.8880.901
classBacteroidia0.0030.8960.905
orderBacteroidales0.0030.8960.905
phylumBacteroidetes0.0030.8970.905
familySuccinivibrionaceae-0.0030.9040.91
speciesTuricibacter_sanguinis0.0020.9230.927
genusSuccinatimonas0.00.9880.988
speciesSuccinatimonas_hippei0.00.9880.988
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.03234799438660.01165781568881.3173747365e-123941.29151
Liver cirrhosisChina1201140.1269117946240.0276951783673.95630952329e-0914844.98505
Crohns diseaseSpain17660.09856614295430.01516538045270.00052091996258341311.3483
Colorectal cancerAustria64350.1676815015120.04126991972170.044516308995426258.88144
Type II diabetesChina1831850.09953489344550.07510738249880.105163975994974732.2119
Type II diabetesSweden53920.02123264482350.02787718157940.189619749087660722.3739
Ulcerative colitisSpain78660.008633649376790.01516538045270.4434044592281778758.6759
Rheumatoid arthritisChina127980.05852203302630.04622528552460.8679434228562690689.7255
ObesityDenmark1691230.01599133237320.03206178639130.9691104373862981498.0369
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382