MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-10 00:07:04 PST
Job id & description: 1552, test
Query type: protein
Count queries & homologs: 1, 28
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P0A881|TRPR_ECOLI7239605CompleteK03720COG2973ProteobacteriaEscherichia100.0100.098.15
sp|P0A881|TRPR_ECOLI7251276CompleteK03720COG2973ProteobacteriaEscherichia100.0100.098.15
sp|P0A881|TRPR_ECOLI7261488CompleteK03720COG2973ProteobacteriaEnterobacter99.0799.0785.98
sp|P0A881|TRPR_ECOLI6489008CompleteK03720COG2973ProteobacteriaEnterobacter97.2277.2186.67
sp|P0A881|TRPR_ECOLI7251626CompleteK03720COG2973ProteobacteriaCitrobacter97.2297.2291.43
sp|P0A881|TRPR_ECOLI6720807CompleteK03720COG2973ProteobacteriaKlebsiella100.085.0487.96
sp|P0A881|TRPR_ECOLI6195970CompleteK03720COG2973ProteobacteriaKlebsiella100.073.4787.96
sp|P0A881|TRPR_ECOLI6939117Lack 5'-endK03720COG2973ProteobacteriaKlebsiella100.090.7687.04
sp|P0A881|TRPR_ECOLI7230201CompleteK03720COG2973ProteobacteriaEnterobacter99.0798.1786.92
sp|P0A881|TRPR_ECOLI7187555CompleteK03720COG2973ProteobacteriaKlebsiella100.098.1885.19
sp|P0A881|TRPR_ECOLI7234263CompleteK03720COG2973ProteobacteriaEnterobacter99.0798.1785.05
sp|P0A881|TRPR_ECOLI6810443CompleteK03720COG2973ProteobacteriaEnterobacter97.2284.6887.62
sp|P0A881|TRPR_ECOLI6560439CompleteK03720COG2973ProteobacteriaEnterobacter97.2278.9588.57
sp|P0A881|TRPR_ECOLI7209336CompleteK03720COG2973ProteobacteriaKlebsiella97.2295.4585.71
sp|P0A881|TRPR_ECOLI7188208CompleteK03720COG2973ProteobacteriaKlebsiella99.0797.2784.11
sp|P0A881|TRPR_ECOLI7533608CompleteK03720COG2973ProteobacteriaCitrobacter90.7498.9990.82
sp|P0A881|TRPR_ECOLI7754196Lack 3'-endK03720COG2973ProteobacteriaCitrobacter85.19100.092.39
sp|P0A881|TRPR_ECOLI7347355CompleteK03720COG2973ProteobacteriaProvidencia97.22100.061.9
sp|P0A881|TRPR_ECOLI7032279CompleteK03720COG2973unknownunknown97.2291.3864.15
sp|P0A881|TRPR_ECOLI7267706CompleteK03720COG2973Proteobacteriaunknown97.2297.2260.95
sp|P0A881|TRPR_ECOLI7463201CompleteK03720COG2973unknownunknown81.4887.1371.59
sp|P0A881|TRPR_ECOLI7180233CompleteK03720COG2973ProteobacteriaProteus88.8986.4958.33
sp|P0A881|TRPR_ECOLI7439771CompleteK03720COG2973ProteobacteriaAggregatibacter81.4886.2740.91
sp|P0A881|TRPR_ECOLI7440552CompleteK03720COG2973ProteobacteriaHaemophilus81.4886.2740.91
sp|P0A881|TRPR_ECOLI7422041CompleteK03720COG2973ProteobacteriaHaemophilus81.4886.2740.91
sp|P0A881|TRPR_ECOLI7651109Lack 5'-endK03720COG2973unknownunknown81.4892.6343.18
sp|P0A881|TRPR_ECOLI7822682Lack 3'-endK03720COG2973ProteobacteriaHaemophilus76.8592.2242.17
sp|P0A881|TRPR_ECOLI7531918CompleteK03720COG2973ProteobacteriaHaemophilus80.5687.8841.38
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumProteobacteria0.7510.00.0
classGammaproteobacteria0.9540.00.0
orderEnterobacteriales0.8960.00.0
familyEnterobacteriaceae0.8960.00.0
genusEscherichia0.8240.00.0
speciesEscherichia_coli0.7990.00.0
genusKlebsiella0.6037.14e-1864.81e-184
speciesKlebsiella_pneumoniae0.5736.71e-1643.96e-162
speciesEscherichia_unclassified0.5321.98e-1371.04e-135
genusPantoea0.4528.33e-953.57e-93
speciesPantoea_unclassified0.4528.33e-953.57e-93
genusEnterobacter0.4321.03e-854.05e-84
speciesEnterobacter_cloacae0.4255.02e-831.82e-81
speciesSubdoligranulum_unclassified-0.3772.24e-647.55e-63
familyFusobacteriaceae0.3772.67e-648.4e-63
phylumFusobacteria0.3744.57e-631.2e-61
classFusobacteriia0.3744.57e-631.2e-61
orderFusobacteriales0.3744.57e-631.2e-61
genusSubdoligranulum-0.3738.91e-632.21e-61
genusFusobacterium0.3721.37e-623.23e-61
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3573.14e-577.06e-56
speciesRuminococcus_gnavus0.3534.28e-569.18e-55
speciesVeillonella_parvula0.3467.43e-541.52e-52
genusVeillonella0.3421.77e-523.48e-51
genusCitrobacter0.3422.15e-524.06e-51
speciesClostridium_nexile0.3321.94e-493.52e-48
speciesHaemophilus_parainfluenzae0.3315.39e-499.42e-48
genusHaemophilus0.331.26e-482.12e-47
speciesCitrobacter_unclassified0.3291.4e-482.28e-47
orderPasteurellales0.3283.89e-485.92e-47
familyPasteurellaceae0.3283.89e-485.92e-47
speciesCitrobacter_freundii0.3277.61e-481.12e-46
speciesEubacterium_siraeum-0.3244.9e-477.01e-46
speciesAnaerotruncus_unclassified-0.3138.8e-441.22e-42
speciesVeillonella_unclassified0.3082.73e-423.68e-41
genusPseudoflavonifractor-0.2972.28e-392.91e-38
speciesPseudoflavonifractor_capillosus-0.2972.28e-392.91e-38
speciesMegasphaera_micronuciformis0.2959.82e-391.22e-37
speciesKlebsiella_oxytoca0.2924.5e-385.45e-37
speciesVeillonella_dispar0.2861.31e-361.55e-35
speciesClostridium_perfringens0.2812.48e-352.86e-34
speciesClostridium_leptum-0.2791.09e-341.22e-33
genusButyrivibrio-0.2731.96e-332.15e-32
genusCoprobacillus0.2732.08e-332.23e-32
familyRuminococcaceae-0.2719.7e-331.02e-31
speciesEubacterium_ramulus-0.271.41e-321.45e-31
genusMegasphaera0.2683.5e-323.51e-31
genusCoprococcus-0.2685.12e-325.03e-31
speciesCoprobacillus_unclassified0.2678.96e-328.63e-31
speciesStreptococcus_anginosus0.2637.52e-317.1e-30
speciesKlebsiella_unclassified0.2629.04e-318.37e-30
speciesVeillonella_atypica0.2587.58e-306.8e-29
genusBarnesiella-0.2587.78e-306.8e-29
speciesBarnesiella_intestinihominis-0.2587.78e-306.8e-29
familyOscillospiraceae-0.2589.13e-307.62e-29
genusOscillibacter-0.2589.13e-307.62e-29
speciesFusobacterium_nucleatum0.2589.2e-307.62e-29
speciesOscillibacter_unclassified-0.2589.44e-307.68e-29
orderLactobacillales0.2571.62e-291.3e-28
speciesLactobacillus_salivarius0.2562.01e-291.58e-28
classBacilli0.2562.68e-292.07e-28
genusWeissella0.2562.88e-292.19e-28
speciesClostridium_ramosum0.2553.08e-292.31e-28
genusActinobacillus0.2531.14e-288.28e-28
speciesActinobacillus_unclassified0.2531.14e-288.28e-28
speciesCoprococcus_comes-0.2481.16e-278.3e-27
classClostridia-0.2471.79e-271.24e-26
orderClostridiales-0.2471.79e-271.24e-26
speciesBifidobacterium_adolescentis-0.2471.89e-271.29e-26
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2472.5e-271.69e-26
speciesDorea_longicatena-0.2422.02e-261.34e-25
speciesClostridium_bolteae0.2414.86e-263.19e-25
genusAnaerotruncus-0.247.17e-264.64e-25
speciesWeissella_confusa0.2398.55e-265.45e-25
speciesFusobacterium_mortiferum0.2357.37e-254.64e-24
genusEnterococcus0.2341.09e-246.77e-24
speciesFusobacterium_ulcerans0.2341.18e-247.23e-24
familyBacteroidales_noname-0.2331.45e-248.55e-24
genusBacteroidales_noname-0.2331.45e-248.55e-24
speciesBacteroidales_bacterium_ph8-0.2331.45e-248.55e-24
genusAggregatibacter0.2322.4e-241.4e-23
familyEnterococcaceae0.2322.84e-241.63e-23
speciesStreptococcus_salivarius0.2314.51e-242.56e-23
speciesEubacterium_hallii-0.2315.4e-243.03e-23
genusDorea-0.2281.7e-239.44e-23
familyRikenellaceae-0.2272.32e-231.26e-22
genusAlistipes-0.2272.32e-231.26e-22
genusRuminococcaceae_noname-0.2273.13e-231.66e-22
speciesRuminococcaceae_bacterium_D16-0.2273.13e-231.66e-22
genusCoprobacter-0.2264.93e-232.56e-22
speciesCoprobacter_fastidiosus-0.2264.93e-232.56e-22
phylumVerrucomicrobia-0.2241.25e-226.08e-22
classVerrucomicrobiae-0.2241.25e-226.08e-22
orderVerrucomicrobiales-0.2241.25e-226.08e-22
familyVerrucomicrobiaceae-0.2241.25e-226.08e-22
genusAkkermansia-0.2241.25e-226.08e-22
speciesAkkermansia_muciniphila-0.2241.25e-226.08e-22
speciesClostridium_hathewayi0.2197.79e-223.75e-21
genusEubacterium-0.2181.7e-218.07e-21
familyEubacteriaceae-0.2181.71e-218.07e-21
speciesLactobacillus_mucosae0.2156.53e-213.05e-20
speciesEubacterium_rectale-0.2131.13e-205.23e-20
speciesBacteroides_uniformis-0.2122.09e-209.58e-20
speciesButyrivibrio_unclassified-0.2112.53e-201.15e-19
familyStreptococcaceae0.2112.56e-201.15e-19
speciesBacteroides_fragilis0.2113.21e-201.43e-19
speciesClostridium_symbiosum0.2096.51e-202.87e-19
speciesBifidobacterium_dentium0.2081.15e-195.03e-19
speciesCoprococcus_catus-0.2081.17e-195.07e-19
speciesPrevotella_buccae0.2071.46e-196.26e-19
speciesAlistipes_senegalensis-0.2071.52e-196.46e-19
speciesMitsuokella_unclassified-0.2071.7e-197.16e-19
genusStreptococcus0.2053.19e-191.33e-18
speciesStreptococcus_mitis_oralis_pneumoniae0.2053.37e-191.4e-18
speciesStreptococcus_infantarius0.2045.74e-192.36e-18
familyLeuconostocaceae0.2046.23e-192.53e-18
speciesFusobacterium_varium0.2021.05e-184.24e-18
speciesLactococcus_garvieae0.2021.27e-185.08e-18
speciesCampylobacter_concisus0.2011.54e-186.11e-18
familyBacillales_noname0.1984.54e-181.77e-17
genusGemella0.1984.54e-181.77e-17
genusMitsuokella-0.1977.06e-182.73e-17
genusOdoribacter-0.1977.4e-182.84e-17
speciesAggregatibacter_segnis0.1977.69e-182.93e-17
speciesMegamonas_unclassified0.1978.14e-183.07e-17
speciesCollinsella_aerofaciens-0.1979.87e-183.7e-17
genusMegamonas0.1961.06e-173.94e-17
speciesWeissella_cibaria0.1961.12e-174.13e-17
speciesSutterella_wadsworthensis-0.1951.71e-176.26e-17
speciesAlistipes_shahii-0.1942.47e-178.97e-17
genusCollinsella-0.1942.96e-171.07e-16
genusCampylobacter0.1925.72e-172.05e-16
speciesEnterococcus_faecalis0.1926.26e-172.22e-16
familyClostridiaceae0.1917.81e-172.75e-16
speciesAnaerostipes_hadrus-0.1919.19e-173.21e-16
familyCampylobacteraceae0.1919.43e-173.27e-16
speciesAlistipes_putredinis-0.191.15e-163.96e-16
speciesEnterobacter_aerogenes0.191.27e-164.34e-16
speciesRoseburia_hominis-0.191.4e-164.75e-16
genusClostridium0.1891.46e-164.89e-16
classEpsilonproteobacteria0.1891.47e-164.89e-16
orderCampylobacterales0.1891.47e-164.89e-16
speciesC2likevirus_unclassified-0.1812.63e-158.68e-15
speciesBacteroides_stercoris0.1812.86e-159.37e-15
speciesHaemophilus_sputorum0.1813.09e-151.01e-14
genusSutterella-0.1813.29e-151.06e-14
speciesOdoribacter_splanchnicus-0.184.25e-151.36e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.184.72e-151.51e-14
phylumFirmicutes-0.1796.92e-152.19e-14
genusC2likevirus-0.1789.93e-153.12e-14
speciesStreptococcus_gordonii0.1771.1e-143.44e-14
familyLactobacillaceae0.1771.38e-144.29e-14
genusLactobacillus0.1761.5e-144.63e-14
speciesStreptococcus_thermophilus-0.1761.55e-144.75e-14
speciesStreptococcus_australis0.1752.14e-146.52e-14
speciesMethanobrevibacter_smithii-0.1743.41e-141.03e-13
speciesEggerthella_unclassified0.1743.65e-141.1e-13
speciesClostridiales_bacterium_1_7_47FAA0.1734.82e-141.44e-13
orderBacillales0.1726.6e-141.96e-13
speciesHaemophilus_paraphrohaemolyticus0.1727.14e-142.11e-13
phylumEuryarchaeota-0.1727.61e-142.23e-13
genusMethanobrevibacter-0.1727.96e-142.32e-13
familyPorphyromonadaceae-0.171.15e-133.33e-13
classMethanobacteria-0.171.17e-133.33e-13
orderMethanobacteriales-0.171.17e-133.33e-13
familyMethanobacteriaceae-0.171.17e-133.33e-13
speciesAlistipes_indistinctus-0.1691.62e-134.58e-13
speciesDorea_formicigenerans-0.1664.52e-131.27e-12
speciesRuminococcus_sp_5_1_39BFAA-0.1657.17e-132e-12
speciesBacteroides_plebeius0.1648.9e-132.47e-12
genusRuminococcus-0.1641.07e-122.95e-12
genusEggerthella0.1631.24e-123.4e-12
orderCoriobacteriales-0.1621.68e-124.56e-12
familyCoriobacteriaceae-0.1621.68e-124.56e-12
speciesStreptococcus_vestibularis0.162.98e-128.02e-12
speciesRothia_mucilaginosa0.162.99e-128.02e-12
speciesAlistipes_onderdonkii-0.163.51e-129.36e-12
genusPrevotella0.1585.84e-121.55e-11
genusPyramidobacter0.1586.89e-121.81e-11
speciesPyramidobacter_piscolens0.1586.89e-121.81e-11
speciesBlautia_hydrogenotrophica-0.1577.96e-122.08e-11
speciesEnterococcus_faecium0.1578.4e-122.18e-11
phylumSynergistetes0.1551.63e-114.14e-11
classSynergistia0.1551.63e-114.14e-11
orderSynergistales0.1551.63e-114.14e-11
familySynergistaceae0.1551.63e-114.14e-11
familyPeptostreptococcaceae0.1533.19e-118.05e-11
genusAdlercreutzia-0.1523.49e-118.72e-11
speciesAdlercreutzia_equolifaciens-0.1523.49e-118.72e-11
speciesBifidobacterium_pseudocatenulatum0.1515.33e-111.32e-10
speciesButyrivibrio_crossotus-0.1515.44e-111.34e-10
speciesLactobacillus_fermentum0.156.32e-111.55e-10
speciesClostridium_citroniae0.1499.03e-112.21e-10
familyVeillonellaceae0.1491.01e-102.46e-10
genusSolobacterium0.1481.15e-102.77e-10
speciesSolobacterium_moorei0.1481.15e-102.77e-10
genusPeptostreptococcus0.1481.35e-103.23e-10
speciesCoprococcus_sp_ART55_1-0.1462.06e-104.91e-10
speciesPrevotella_copri0.1462.1e-104.98e-10
genusMorganella0.1462.39e-105.61e-10
speciesMorganella_morganii0.1462.39e-105.61e-10
speciesKlebsiella_sp_MS_92_30.1452.66e-106.22e-10
speciesStreptococcus_lutetiensis0.1453.2e-107.44e-10
familyMicrococcaceae0.1443.84e-108.88e-10
genusRothia0.1444.23e-109.74e-10
speciesStreptococcus_sanguinis0.1435.52e-101.26e-09
speciesPrevotella_stercorea0.1435.69e-101.3e-09
speciesRuminococcus_obeum-0.141.21e-092.75e-09
speciesAnaerostipes_unclassified0.1391.38e-093.12e-09
speciesMegasphaera_unclassified0.1382.13e-094.79e-09
speciesBacteroides_thetaiotaomicron0.1372.72e-096.08e-09
genusPeptostreptococcaceae_noname0.1363.15e-097.01e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1363.47e-097.69e-09
speciesEubacterium_ventriosum-0.1354.59e-091.01e-08
genusFlavonifractor0.1345.42e-091.18e-08
speciesFlavonifractor_plautii0.1345.42e-091.18e-08
speciesErysipelotrichaceae_bacterium_21_3-0.1346.67e-091.45e-08
genusProteus0.1311.25e-082.71e-08
familyMyoviridae0.1311.26e-082.72e-08
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1311.37e-082.94e-08
familySiphoviridae-0.131.7e-083.63e-08
speciesPeptostreptococcus_stomatis0.1291.91e-084.06e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1282.97e-086.29e-08
speciesLachnospiraceae_bacterium_2_1_46FAA0.1273.16e-086.66e-08
genusClostridiales_noname0.1273.52e-087.38e-08
speciesClostridium_bartlettii0.1273.79e-087.92e-08
speciesProteus_mirabilis0.1255.19e-081.08e-07
speciesMegamonas_rupellensis0.1255.59e-081.16e-07
speciesLeuconostoc_lactis0.1246.92e-081.43e-07
speciesRuminococcus_lactaris-0.1247.61e-081.56e-07
speciesRoseburia_unclassified-0.1239.15e-081.87e-07
speciesMegamonas_hypermegale0.1221.25e-072.54e-07
speciesOdoribacter_unclassified-0.1211.5e-073.04e-07
genusAnaerostipes-0.121.99e-074.01e-07
speciesStreptococcus_mutans0.1183.22e-076.47e-07
speciesAlistipes_sp_AP11-0.1183.33e-076.66e-07
speciesParaprevotella_xylaniphila-0.1165.14e-071.02e-06
speciesBacteroides_intestinalis0.1156.3e-071.25e-06
speciesLactobacillus_sanfranciscensis0.1147.77e-071.53e-06
speciesOscillibacter_sp_KLE_1745-0.1147.95e-071.56e-06
orderActinomycetales0.1148.42e-071.65e-06
speciesAlistipes_finegoldii-0.1139.2e-071.79e-06
speciesStreptococcus_parasanguinis0.1139.59e-071.86e-06
speciesOlsenella_unclassified-0.1121.16e-062.24e-06
speciesParabacteroides_merdae-0.1121.31e-062.52e-06
genusAcidaminococcaceae_unclassified-0.1111.37e-062.63e-06
familyActinomycetaceae0.1111.53e-062.92e-06
speciesMethanobrevibacter_unclassified-0.111.85e-063.52e-06
speciesParaprevotella_unclassified-0.1082.72e-065.16e-06
genusParaprevotella-0.1083.01e-065.68e-06
genusActinomyces0.1083.17e-065.96e-06
speciesLactobacillus_crispatus0.1073.5e-066.56e-06
speciesStreptococcus_pasteurianus0.1064.26e-067.95e-06
familySutterellaceae-0.1055.02e-069.33e-06
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1055.33e-069.87e-06
speciesRuminococcus_champanellensis-0.1055.77e-061.06e-05
speciesEnterobacteria_phage_HK5440.1046.24e-061.15e-05
familyLachnospiraceae-0.1046.44e-061.18e-05
speciesHoldemania_filiformis-0.1047.26e-061.32e-05
familyPropionibacteriaceae-0.1037.61e-061.38e-05
speciesBacteroides_coprocola0.1037.61e-061.38e-05
speciesLactobacillus_vaginalis0.1037.72e-061.39e-05
speciesRuminococcus_bromii-0.1038.46e-061.52e-05
speciesLactobacillus_gasseri0.1038.53e-061.53e-05
speciesMegamonas_funiformis0.1029.85e-061.75e-05
speciesGemella_morbillorum0.1011.17e-052.08e-05
speciesAcidaminococcus_intestini0.1011.25e-052.21e-05
speciesParaprevotella_clara-0.1011.26e-052.22e-05
phylumActinobacteria-0.11.56e-052.73e-05
classActinobacteria-0.11.56e-052.73e-05
speciesLactobacillus_oris0.0991.74e-053.03e-05
speciesPropionibacterium_freudenreichii-0.0982.06e-053.57e-05
orderBurkholderiales-0.0972.56e-054.43e-05
familyOxalobacteraceae-0.0972.78e-054.79e-05
genusOxalobacter-0.0963.24e-055.54e-05
speciesOxalobacter_formigenes-0.0963.24e-055.54e-05
speciesCoprococcus_eutactus-0.0953.67e-056.25e-05
genusFaecalibacterium-0.0944.7e-057.95e-05
speciesFaecalibacterium_prausnitzii-0.0944.7e-057.95e-05
familyAcidaminococcaceae-0.0944.96e-058.36e-05
speciesDesulfovibrio_desulfuricans-0.0926.57e-050.00011
speciesClostridium_clostridioforme0.0926.68e-050.000112
speciesClostridium_sp_L2_50-0.0917.97e-050.000133
genusCatenibacterium-0.098.92e-050.000148
speciesCatenibacterium_mitsuokai-0.098.92e-050.000148
speciesAlistipes_sp_HGB5-0.099.34e-050.000154
speciesLactococcus_phage_P680-0.090.0001010.000166
genusParabacteroides-0.090.0001050.000172
genusBifidobacterium-0.0890.0001110.000181
genusLambdalikevirus0.0890.0001140.000186
speciesBacteroides_salyersiae0.0880.0001290.000209
classBetaproteobacteria-0.0880.000130.00021
genusOlsenella-0.0880.0001380.000222
genusBlautia0.0880.000150.000241
familyClostridiales_Family_XI_Incertae_Sedis0.0870.000170.000272
speciesBacteroides_xylanisolvens0.0860.0001890.000301
speciesBacteroides_finegoldii0.0860.0001940.000308
orderBifidobacteriales-0.0860.0001970.000309
familyBifidobacteriaceae-0.0860.0001970.000309
genusPhascolarctobacterium-0.0860.0001970.000309
speciesPhascolarctobacterium_succinatutens-0.0860.0001970.000309
speciesBacteroides_nordii0.0850.0002490.000389
speciesMegasphaera_elsdenii0.0850.000250.000389
speciesBacteroides_sp_3_1_190.0830.0003220.0005
genusDesulfovibrio-0.0830.0003470.000537
speciesBacteroides_oleiciplenus0.0820.0004180.000645
speciesLactobacillus_plantarum0.0810.0004350.000669
speciesLactobacillus_amylovorus0.0810.0004480.000687
genusHoldemania-0.0810.0004680.000715
speciesOscillibacter_sp_KLE_1728-0.080.0004960.000755
speciesBifidobacterium_catenulatum-0.080.0005270.0008
speciesBacteroides_cellulosilyticus-0.0790.0006180.000935
genusPropionibacterium-0.0770.0008620.0013
classNegativicutes0.0750.00110.00165
orderSelenomonadales0.0750.00110.00165
genusSiphoviridae_noname-0.0750.001120.00167
orderCaudovirales-0.0750.001230.00183
speciesDesulfovibrio_piger-0.0740.001370.00203
speciesEubacterium_biforme-0.0730.00160.00237
genusMyoviridae_noname0.0720.001840.00271
speciesBifidobacterium_breve0.0710.002080.00306
speciesLachnospiraceae_bacterium_1_4_56FAA0.0710.002210.00324
speciesBifidobacterium_animalis-0.0710.002260.0033
speciesAcidaminococcus_unclassified-0.070.00230.00335
speciesBifidobacterium_longum-0.0690.00290.00421
genusLeuconostoc0.0680.003110.0045
speciesSutterella_parvirubra0.0680.003230.00466
genusParvimonas0.0680.003250.00468
speciesParvimonas_unclassified0.0680.003280.00471
genusGordonibacter-0.0680.003410.00486
speciesGordonibacter_pamelaeae-0.0680.003410.00486
speciesBacteroides_dorei-0.0670.003640.00517
speciesBlautia_producta0.0670.003850.00544
speciesAcidaminococcus_fermentans0.0670.003850.00544
speciesLactobacillus_acidophilus-0.0670.003870.00545
speciesAlistipes_unclassified-0.0650.004650.00653
speciesClostridium_sp_ATCC_BAA_4420.0650.005220.00731
speciesEubacterium_cylindroides-0.0640.005680.00793
familyClostridiales_noname0.0630.006030.0084
genusDialister-0.0630.006360.00883
familyBacteroidaceae0.0620.007580.0105
genusBacteroides0.0620.007580.0105
phylumViruses_noname-0.0610.008050.011
classViruses_noname-0.0610.008050.011
orderAeromonadales0.0610.008660.0118
speciesBacteroides_pectinophilus-0.060.009230.0126
speciesCoprobacillus_sp_D60.060.009560.013
speciesLachnospiraceae_bacterium_5_1_57FAA0.060.009590.013
genusTunalikevirus0.060.009970.0135
speciesDialister_invisus-0.0590.01030.0139
speciesEubacterium_eligens-0.0590.01040.014
speciesPorphyromonas_uenonis0.0590.01110.0149
speciesHoldemania_unclassified-0.0570.01340.0179
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0560.01610.0215
speciesRoseburia_intestinalis-0.0550.01640.0218
speciesParabacteroides_sp_D13-0.0550.01680.0223
speciesParabacteroides_goldsteinii0.0530.02120.028
speciesCollinsella_tanakaei0.0520.02320.0306
speciesKlebsiella_phage_KP360.0520.02380.0313
speciesBacteroides_sp_1_1_6-0.0520.02420.0316
speciesRuminococcus_torques-0.0520.02420.0316
speciesLactococcus_phage_936_sensu_lato-0.0520.0250.0326
speciesCoriobacteriaceae_bacterium_phI-0.0510.02630.0342
speciesHoldemania_sp_AP20.0510.02720.0353
speciesEubacterium_limosum0.050.03030.0392
genusMethanosphaera-0.0490.03530.0454
speciesMethanosphaera_stadtmanae-0.0490.03530.0454
genusCoriobacteriaceae_noname-0.0480.0370.0475
speciesBacteroides_salanitronis-0.0480.03730.0477
speciesCoprobacillus_sp_29_10.0480.03840.049
speciesLactococcus_lactis-0.0470.04010.051
familyPrevotellaceae0.0470.0420.0533
speciesEggerthella_lenta0.0460.04570.0578
speciesBifidobacterium_angulatum-0.0450.04940.0623
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0440.05450.0685
genusPeptoniphilus0.0440.05470.0685
speciesClostridium_sp_KLE_1755-0.0440.05490.0685
speciesClostridium_spiroforme-0.0440.0550.0685
speciesLachnospiraceae_bacterium_1_1_57FAA0.0440.0550.0685
speciesBacteroides_barnesiae-0.0440.05930.0737
genusLachnospiraceae_noname-0.0420.07240.0897
speciesLactococcus_phage_jm2-0.0410.07540.0932
genusPorphyromonas0.0390.09410.116
speciesBacteroides_coprophilus0.0380.1020.125
speciesClostridium_asparagiforme0.0350.1250.153
genusSutterellaceae_unclassified-0.0350.1290.157
speciesParabacteroides_unclassified0.0350.1290.157
speciesBacteroides_sp_2_1_22-0.0350.130.158
speciesBacteroides_eggerthii0.0340.1360.165
speciesLactobacillus_reuteri0.0340.1440.174
speciesOdoribacter_laneus-0.0340.1460.176
speciesBacteroides_massiliensis0.0330.1480.178
speciesTuricibacter_sanguinis0.0330.1560.187
speciesPrevotella_bivia0.0320.1730.207
speciesPorphyromonas_asaccharolytica0.030.1910.228
genusRoseburia-0.0290.2070.247
speciesLactococcus_phage_phi7-0.0280.2190.26
speciesLactobacillus_ruminis-0.0280.2250.267
speciesLactobacillus_rhamnosus0.0270.2450.29
speciesEubacterium_sp_3_1_31-0.0260.2560.302
speciesEubacterium_dolichum0.0240.30.353
speciesCollinsella_intestinalis0.0240.3040.357
genusButyricicoccus0.0230.3180.372
speciesButyricicoccus_pullicaecorum0.0230.3180.372
speciesSlackia_piriformis-0.0230.3260.38
speciesMitsuokella_multacida-0.0220.3310.385
speciesParabacteroides_sp_20_3-0.0220.3430.398
genusBurkholderiales_noname0.0210.3650.421
speciesBurkholderiales_bacterium_1_1_470.0210.3650.421
speciesEggerthella_sp_1_3_56FAA-0.0210.370.426
speciesBilophila_unclassified0.020.3840.441
genusAcidaminococcus0.020.3940.451
genusBilophila0.020.3960.453
orderViruses_noname-0.0190.4030.459
speciesBilophila_wadsworthia0.0180.4250.483
speciesDorea_unclassified-0.0180.4290.487
familyBurkholderiales_noname0.0180.430.487
speciesBacteroides_ovatus0.0180.4450.502
genusParasutterella0.0180.4490.505
speciesParasutterella_excrementihominis0.0180.4490.505
speciesLactobacillus_delbrueckii-0.0170.4530.508
familyPodoviridae0.0170.4540.508
familyViruses_noname0.0170.4580.51
genusViruses_noname0.0170.4580.51
speciesBifidobacterium_bifidum-0.0170.4690.521
speciesRuminococcus_sp_JC3040.0170.470.521
speciesPeptostreptococcus_anaerobius0.0170.4720.522
speciesLactococcus_phage_bIL67-0.0160.4830.533
speciesLactobacillus_casei_paracasei-0.0160.4930.542
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0160.4970.546
genusButyricimonas-0.0140.5430.593
speciesButyricimonas_synergistica-0.0140.5430.593
speciesErysipelotrichaceae_bacterium_3_1_530.0140.5490.598
genusStaphylococcus-0.0140.550.598
speciesBacteroides_clarus0.0130.5740.623
classErysipelotrichia0.0120.5890.631
orderErysipelotrichales0.0120.5890.631
familyErysipelotrichaceae0.0120.5890.631
phylumBacteroidetes-0.0120.590.631
classBacteroidia-0.0120.590.631
orderBacteroidales-0.0120.590.631
speciesBacteroides_faecis0.0120.5960.636
speciesBacteroides_sp_4_3_47FAA0.0120.60.639
speciesErysipelotrichaceae_bacterium_6_1_45-0.0120.610.648
orderPseudomonadales0.010.650.689
genusSlackia0.010.6580.696
genusLactococcus0.010.6710.709
speciesCollinsella_unclassified-0.010.6790.715
speciesBacteroides_vulgatus-0.0090.710.746
speciesRuminococcus_callidus-0.0090.7110.746
genusClostridiaceae_noname0.0080.7250.757
speciesClostridiaceae_bacterium_JC1180.0080.7250.757
speciesDialister_succinatiphilus-0.0080.7310.762
familySuccinivibrionaceae-0.0060.7810.812
speciesErysipelotrichaceae_bacterium_2_2_44A0.0060.7870.816
speciesBacteroides_caccae0.0060.7910.819
speciesBacteroides_fluxus0.0060.7950.821
speciesTuricibacter_unclassified-0.0050.8150.84
speciesAnaerotruncus_colihominis0.0050.8180.841
familyStaphylococcaceae-0.0030.890.911
speciesParabacteroides_distasonis-0.0030.890.911
genusTuricibacter0.0030.8980.915
speciesPeptostreptococcaceae_noname_unclassified0.0030.8980.915
speciesParabacteroides_johnsonii0.0030.9050.921
genusErysipelotrichaceae_noname-0.0020.9160.93
speciesRoseburia_inulinivorans0.0020.9310.943
classDeltaproteobacteria-0.0020.9480.954
orderDesulfovibrionales-0.0020.9480.954
familyDesulfovibrionaceae-0.0020.9480.954
genusSuccinatimonas-0.0010.9590.961
speciesSuccinatimonas_hippei-0.0010.9590.961
speciesStreptococcus_phage_Sfi210.00.9830.983
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.05005821883680.00939522797948.62824281432e-129263.11062
Type II diabetesDenmark752770.009470137476160.003396301501381.65419747467e-115491.79959
Crohns diseaseSpain17660.03345554673190.004383076512110.00560646321724703623.3948
Ulcerative colitisSpain78660.003030056490080.004383076512110.0371625495135409413.5053
Colorectal cancerAustria64350.05594361403650.01464488469580.119577225712573519.4038
Type II diabetesChina1831850.03258878633790.02507982724820.2905532596161586452.4274
Type II diabetesSweden53920.007952123003110.008037032897260.6063236927031897864.2668
ObesityDenmark1691230.004716349745180.009135753798130.7146978269692434780.0598
Rheumatoid arthritisChina127980.02148641113180.01802819331380.7324719503282326177.5703
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382