MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-13 23:28:45 PST
Job id & description: 1556, 4-hydroxybenzoyl-CoA-reductase
Query type: protein
Count queries & homologs: 1, 17
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|O33820|HCRB_THAAR2509735CompleteK04109COG1319unknownunknown97.8498.1330.65
sp|O33820|HCRB_THAAR2486060CompleteK04109COG1319unknownunknown78.778.6437.07
sp|O33820|HCRB_THAAR2509317CompleteK04109COG1319unknownunknown94.4494.3931.63
sp|O33820|HCRB_THAAR2478283CompleteK04109COG1319unknownunknown80.8680.8634.96
sp|O33820|HCRB_THAAR2613396CompleteK04109COG1319unknownunknown71.674.234.62
sp|O33820|HCRB_THAAR3083554Lack 3'-endK04109COG1319unknownunknown85.1997.1933.8
sp|O33820|HCRB_THAAR2639600CompleteK04109COG1319unknownunknown80.5683.9733.7
sp|O33820|HCRB_THAAR2268835CompleteK11178COG1319unknownunknown75.074.1235.55
sp|O33820|HCRB_THAAR2656160CompleteK11178COG1319unknownunknown71.675.2436.1
sp|O33820|HCRB_THAAR2542176Lack 5'-endK13479COG1319ProteobacteriaBilophila81.4871.1632.71
sp|O33820|HCRB_THAAR2491836Lack 5'-endK11178COG1319ProteobacteriaEscherichia80.8682.6633.82
sp|O33820|HCRB_THAAR2767357CompleteK13479COG1319ProteobacteriaEscherichia80.5674.0133.08
sp|O33820|HCRB_THAAR3684444Lack 3'-endK04109COG1319unknownunknown70.3791.235.19
sp|O33820|HCRB_THAAR2560095CompleteK11178COG1319ProteobacteriaEscherichia72.2274.8432.51
sp|O33820|HCRB_THAAR4623931Lack 3'-endK13479COG1319Proteobacteriaunknown74.69100.033.6
sp|O33820|HCRB_THAAR2940569CompleteK13479COG1319ProteobacteriaEscherichia80.5677.0531.95
sp|O33820|HCRB_THAAR2995494CompleteK03519COG1319unknownunknown79.3274.7430.68
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEscherichia0.7470.00.0
speciesEscherichia_coli0.7510.00.0
orderEnterobacteriales0.6975.2e-2726.14e-270
familyEnterobacteriaceae0.6975.2e-2726.14e-270
classGammaproteobacteria0.6311.34e-2081.26e-206
phylumProteobacteria0.6315.09e-2084e-206
speciesEscherichia_unclassified0.4373.08e-882.08e-86
genusPantoea0.3991.64e-728.6e-71
speciesPantoea_unclassified0.3991.64e-728.6e-71
classDeltaproteobacteria0.3321.77e-496.96e-48
orderDesulfovibrionales0.3321.77e-496.96e-48
familyDesulfovibrionaceae0.3321.77e-496.96e-48
genusBilophila0.3314.87e-491.77e-47
speciesBilophila_unclassified0.3292.17e-487.32e-47
genusKlebsiella0.3279.57e-483.01e-46
speciesKlebsiella_pneumoniae0.3113.55e-431.05e-41
speciesBilophila_wadsworthia0.2878.82e-372.45e-35
speciesClostridium_bolteae0.2716.86e-331.8e-31
speciesClostridium_hathewayi0.2522.02e-285.02e-27
speciesRuminococcus_gnavus0.2181.47e-213.47e-20
familyClostridiaceae0.2162.93e-216.59e-20
genusClostridium0.2148.3e-211.78e-19
genusCoprobacillus0.2112.83e-205.81e-19
familyFusobacteriaceae0.2095.92e-201.16e-18
speciesClostridium_symbiosum0.2071.83e-193.46e-18
genusFusobacterium0.2045e-199.08e-18
genusFlavonifractor0.2021.07e-181.8e-17
speciesFlavonifractor_plautii0.2021.07e-181.8e-17
speciesClostridium_citroniae0.2011.42e-182.31e-17
speciesEnterobacter_cloacae0.2011.48e-182.33e-17
phylumFusobacteria0.2011.7e-182.43e-17
classFusobacteriia0.2011.7e-182.43e-17
orderFusobacteriales0.2011.7e-182.43e-17
speciesClostridium_nexile0.22.4e-183.33e-17
genusEnterobacter0.1977.34e-189.9e-17
genusCitrobacter0.1942.52e-173.3e-16
speciesCoprobacillus_unclassified0.1925.52e-177.04e-16
speciesClostridium_ramosum0.1891.46e-161.81e-15
speciesClostridiales_bacterium_1_7_47FAA0.185.15e-156.23e-14
speciesCitrobacter_unclassified0.1761.76e-142.06e-13
speciesCitrobacter_freundii0.1761.79e-142.06e-13
speciesBacteroides_fragilis0.1761.89e-142.12e-13
speciesEggerthella_unclassified0.1734.94e-145.42e-13
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1726.01e-146.45e-13
speciesEubacterium_rectale-0.171.54e-131.62e-12
genusEnterococcus0.1691.93e-131.98e-12
genusEggerthella0.1682.52e-132.53e-12
speciesFusobacterium_ulcerans0.1673.82e-133.76e-12
familyEnterococcaceae0.1674.28e-134.12e-12
familyClostridiales_noname0.162.94e-122.78e-11
genusEubacterium-0.1578.93e-128.26e-11
familyEubacteriaceae-0.1579.21e-128.36e-11
speciesKlebsiella_unclassified0.1551.54e-111.37e-10
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1542.14e-111.87e-10
speciesLactococcus_garvieae0.1515.44e-114.67e-10
genusCoprococcus-0.156.45e-115.44e-10
speciesKlebsiella_oxytoca0.157.65e-116.33e-10
speciesEnterococcus_faecalis0.1498.5e-116.92e-10
speciesC2likevirus_unclassified-0.1481.21e-109.68e-10
genusC2likevirus-0.1461.99e-101.57e-09
phylumSynergistetes0.1452.85e-102.1e-09
classSynergistia0.1452.85e-102.1e-09
orderSynergistales0.1452.85e-102.1e-09
familySynergistaceae0.1452.85e-102.1e-09
speciesEubacterium_siraeum-0.1443.59e-102.61e-09
genusButyrivibrio-0.1434.67e-103.34e-09
genusPyramidobacter0.1435.55e-103.85e-09
speciesPyramidobacter_piscolens0.1435.55e-103.85e-09
genusWeissella0.1427.71e-105.27e-09
speciesAnaerotruncus_colihominis0.1391.4e-099.44e-09
speciesBifidobacterium_adolescentis-0.1382.1e-091.37e-08
classClostridia-0.1382.12e-091.37e-08
orderClostridiales-0.1382.12e-091.37e-08
genusClostridiales_noname0.1382.33e-091.49e-08
phylumFirmicutes-0.1363.28e-092.06e-08
speciesBacteroides_nordii0.1354.53e-092.81e-08
speciesSutterella_wadsworthensis-0.1321.05e-086.44e-08
speciesWeissella_confusa0.1321.09e-086.6e-08
genusMorganella0.1311.17e-086.9e-08
speciesMorganella_morganii0.1311.17e-086.9e-08
genusRuminococcaceae_noname-0.131.83e-081.05e-07
speciesRuminococcaceae_bacterium_D16-0.131.83e-081.05e-07
genusMegamonas0.1273.85e-082.17e-07
speciesMegamonas_unclassified0.1273.86e-082.17e-07
genusBlautia0.1264.5e-082.5e-07
speciesFusobacterium_varium0.1265.14e-082.82e-07
genusSutterella-0.1247.16e-083.88e-07
speciesStreptococcus_infantarius0.1239.41e-085.05e-07
speciesAnaerotruncus_unclassified-0.121.83e-079.71e-07
familyLeuconostocaceae0.122.07e-071.09e-06
speciesAnaerostipes_hadrus-0.122.12e-071.1e-06
speciesRoseburia_intestinalis-0.1183.04e-071.56e-06
speciesAnaerostipes_unclassified0.1173.86e-071.96e-06
speciesCoprococcus_sp_ART55_1-0.1146.93e-073.48e-06
speciesBacteroides_salyersiae0.1147e-073.48e-06
speciesBacteroides_intestinalis0.1148.05e-073.96e-06
genusPseudoflavonifractor-0.1139.71e-074.68e-06
speciesPseudoflavonifractor_capillosus-0.1139.71e-074.68e-06
speciesClostridium_clostridioforme0.1121.12e-065.34e-06
genusDorea-0.1121.26e-065.95e-06
familyRuminococcaceae-0.1121.34e-066.25e-06
speciesCoprococcus_comes-0.1111.35e-066.25e-06
speciesEubacterium_ramulus-0.1111.49e-066.83e-06
speciesFusobacterium_nucleatum0.1111.61e-067.31e-06
speciesKlebsiella_sp_MS_92_30.1111.63e-067.33e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.111.8e-068.02e-06
speciesEnterococcus_faecium0.1092.3e-061.01e-05
speciesBacteroides_thetaiotaomicron0.1092.38e-061.04e-05
familySiphoviridae-0.1082.77e-061.2e-05
speciesClostridium_asparagiforme0.1082.9e-061.24e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.1082.92e-061.24e-05
speciesBacteroides_stercoris0.1082.99e-061.26e-05
genusMegasphaera0.1083.03e-061.27e-05
speciesStreptococcus_thermophilus-0.1083.07e-061.27e-05
speciesMitsuokella_unclassified-0.1073.27e-061.34e-05
speciesOdoribacter_unclassified-0.1064.71e-061.92e-05
speciesParabacteroides_goldsteinii0.1055.19e-062.09e-05
genusFaecalibacterium-0.1055.46e-062.17e-05
speciesFaecalibacterium_prausnitzii-0.1055.46e-062.17e-05
speciesEnterobacteria_phage_HK5440.1046.53e-062.57e-05
speciesSubdoligranulum_unclassified-0.1037.53e-062.94e-05
speciesDorea_longicatena-0.1029.54e-063.69e-05
speciesDorea_formicigenerans-0.1021.01e-053.84e-05
speciesBacteroides_uniformis-0.1021.01e-053.84e-05
genusMitsuokella-0.1011.32e-054.98e-05
speciesLactobacillus_sanfranciscensis0.11.54e-055.77e-05
speciesButyrivibrio_crossotus-0.0982.09e-057.77e-05
speciesWeissella_cibaria0.0982.35e-058.67e-05
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0962.97e-050.000109
genusSubdoligranulum-0.0953.55e-050.000128
speciesBacteroides_sp_3_1_190.0953.55e-050.000128
speciesBacteroides_plebeius0.0944.32e-050.000154
speciesCollinsella_aerofaciens-0.0944.85e-050.000172
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0935.55e-050.000195
speciesFusobacterium_mortiferum0.0926.51e-050.000228
speciesLactobacillus_salivarius0.0926.72e-050.000233
speciesClostridium_perfringens0.0917.69e-050.000265
speciesMegamonas_hypermegale0.0918.71e-050.000298
speciesBifidobacterium_pseudocatenulatum0.0890.0001070.000363
genusHoldemania0.0880.0001310.000442
speciesPorphyromonas_uenonis0.0880.0001330.000445
speciesMegamonas_rupellensis0.0880.000150.000495
speciesClostridium_leptum-0.0880.000150.000495
genusCollinsella-0.0870.0001520.000498
speciesCoprococcus_catus-0.0870.000160.000521
familyLachnospiraceae-0.0870.000170.00055
speciesClostridium_sp_ATCC_BAA_4420.0870.0001790.000575
speciesMegasphaera_unclassified0.0860.0002090.000667
speciesButyrivibrio_unclassified-0.0850.0002150.000681
genusCoprobacter-0.0840.0002560.0008
speciesCoprobacter_fastidiosus-0.0840.0002560.0008
genusDesulfovibrio0.0840.0002590.000804
speciesStreptococcus_anginosus0.0840.0002660.000821
genusProteus0.0840.000280.000858
orderCaudovirales-0.0840.0002830.000862
speciesCoprococcus_eutactus-0.0830.0003090.000935
speciesRuminococcus_sp_5_1_39BFAA-0.0830.0003120.000938
speciesAlistipes_sp_HGB5-0.0830.000320.000956
speciesAcidaminococcus_intestini0.0830.0003480.00103
speciesRuminococcus_champanellensis-0.0820.0003640.00107
genusPrevotella0.0820.0003690.00108
speciesLachnospiraceae_bacterium_2_1_58FAA0.0820.000390.00113
speciesEubacterium_biforme-0.0820.000390.00113
speciesEnterobacter_aerogenes0.0810.0004320.00124
familyPropionibacteriaceae-0.0810.0004620.00132
speciesStreptococcus_lutetiensis0.080.0005350.00152
speciesEubacterium_hallii-0.0790.0006440.00182
genusBarnesiella-0.0790.0006720.00188
speciesBarnesiella_intestinihominis-0.0790.0006720.00188
speciesEggerthella_lenta0.0780.0006860.00189
orderLactobacillales0.0780.0006870.00189
genusRoseburia-0.0780.0006890.00189
classBacilli0.0780.0006930.00189
speciesBifidobacterium_catenulatum-0.0770.0008240.00224
speciesLachnospiraceae_bacterium_5_1_57FAA0.0770.0008450.00228
speciesBacteroides_oleiciplenus0.0770.0008670.00233
speciesPrevotella_stercorea0.0770.0008840.00236
genusPeptostreptococcus0.0760.001030.00273
speciesSubdoligranulum_sp_4_3_54A2FAA0.0750.001120.00295
speciesMegasphaera_micronuciformis0.0740.001280.00336
speciesLactobacillus_plantarum0.0740.001290.00336
speciesLachnospiraceae_bacterium_1_4_56FAA0.0740.001380.00358
familyLactobacillaceae0.0740.001460.00377
speciesLactobacillus_amylovorus0.0730.001540.00395
speciesPeptostreptococcaceae_noname_unclassified-0.0730.00160.00408
familyBacillales_noname0.0730.001660.00419
genusGemella0.0730.001660.00419
genusLactobacillus0.0720.001790.00449
genusSolobacterium0.0720.001910.00474
speciesSolobacterium_moorei0.0720.001910.00474
speciesEubacterium_limosum0.0720.001950.00479
speciesStreptococcus_pasteurianus0.0720.001950.00479
speciesPrevotella_bivia0.0720.001960.00479
speciesTuricibacter_unclassified-0.0720.001970.00479
speciesRoseburia_inulinivorans-0.0710.002040.00494
speciesParabacteroides_johnsonii0.0710.002060.00496
speciesLactococcus_lactis-0.0710.002090.00501
speciesParaprevotella_xylaniphila-0.0710.002110.00503
genusCatenibacterium-0.0710.002140.00503
speciesCatenibacterium_mitsuokai-0.0710.002140.00503
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0710.002140.00503
genusTuricibacter-0.070.002310.0054
familyMyoviridae0.070.002410.00558
speciesPrevotella_copri0.070.002410.00558
genusLambdalikevirus0.0690.002760.00635
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0690.003010.0069
speciesBacteroides_clarus0.0680.003070.007
speciesGemella_morbillorum0.0680.003180.00718
speciesVeillonella_parvula0.0680.003180.00718
genusPeptoniphilus0.0680.003430.00771
speciesRoseburia_hominis-0.0680.003470.00776
speciesBacteroides_eggerthii0.0670.003570.00795
speciesCoprobacillus_sp_D60.0670.003840.00851
familySutterellaceae-0.0670.003990.0088
speciesProteus_mirabilis0.0660.004190.0092
genusPorphyromonas0.0650.004920.0108
speciesLachnospiraceae_bacterium_1_1_57FAA0.0650.004960.0108
speciesRuminococcus_torques0.0640.005850.0127
speciesLactobacillus_acidophilus-0.0630.006270.0135
speciesLactobacillus_mucosae0.0630.006430.0138
phylumViruses_noname-0.0630.006510.0138
classViruses_noname-0.0630.006510.0138
familyClostridiales_Family_XI_Incertae_Sedis0.0630.006520.0138
orderBacillales0.0630.006610.0139
speciesAcidaminococcus_fermentans0.0630.006670.014
speciesCoprobacillus_sp_29_10.0620.007130.0149
speciesBlautia_hydrogenotrophica-0.0610.008030.0167
speciesBacteroides_xylanisolvens0.0610.008550.0177
genusAnaerostipes-0.0610.008570.0177
speciesBlautia_producta0.060.008910.0183
speciesPeptostreptococcus_stomatis0.060.009220.0188
speciesRoseburia_unclassified-0.060.009380.0191
genusPhascolarctobacterium-0.0580.01140.023
speciesPhascolarctobacterium_succinatutens-0.0580.01140.023
speciesOscillibacter_sp_KLE_1728-0.0580.01170.0235
speciesRuminococcus_lactaris-0.0580.01290.0258
classErysipelotrichia0.0570.01440.0284
orderErysipelotrichales0.0570.01440.0284
familyErysipelotrichaceae0.0570.01440.0284
speciesBacteroides_coprocola0.0560.01490.0293
orderAeromonadales0.0560.01510.0296
speciesBifidobacterium_animalis-0.0550.01640.0319
speciesMegamonas_funiformis0.0550.01640.0319
speciesMethanobrevibacter_smithii-0.0550.01740.0337
speciesOlsenella_unclassified-0.0540.01930.0372
speciesDorea_unclassified-0.0540.01990.0382
speciesLactobacillus_casei_paracasei-0.0540.02060.0394
speciesLactobacillus_fermentum0.0530.02070.0394
speciesLeuconostoc_lactis0.0530.02120.0402
genusParaprevotella-0.0530.02190.0413
speciesBacteroides_pectinophilus-0.0530.02210.0416
speciesDesulfovibrio_desulfuricans0.0530.02250.0421
speciesEubacterium_eligens-0.0530.02270.0423
speciesParaprevotella_unclassified-0.0530.0230.0427
genusAcidaminococcaceae_unclassified-0.0520.02370.0439
speciesEubacterium_ventriosum-0.0520.02450.0452
genusSlackia0.0520.02480.0455
speciesHoldemania_filiformis0.0520.02550.0467
speciesAcidaminococcus_unclassified-0.0510.02630.0479
phylumEuryarchaeota-0.0510.02760.0501
genusMethanobrevibacter-0.0510.02770.0501
speciesPorphyromonas_asaccharolytica0.0510.02810.0506
genusBifidobacterium-0.0510.02820.0506
speciesAlistipes_unclassified-0.050.02980.0533
orderBurkholderiales-0.050.03010.0536
speciesTuricibacter_sanguinis-0.050.03120.0554
genusParasutterella0.050.03170.0558
speciesParasutterella_excrementihominis0.050.03170.0558
speciesBifidobacterium_dentium0.050.03210.0563
speciesLactococcus_phage_P680-0.0490.03290.0574
speciesStreptococcus_australis0.0490.03310.0574
familyBacteroidaceae0.0490.03320.0574
genusBacteroides0.0490.03320.0574
classBetaproteobacteria-0.0490.03380.0582
genusMyoviridae_noname0.0490.03470.0593
orderBifidobacteriales-0.0490.03480.0593
familyBifidobacteriaceae-0.0490.03480.0593
phylumVerrucomicrobia-0.0480.03920.0653
classVerrucomicrobiae-0.0480.03920.0653
orderVerrucomicrobiales-0.0480.03920.0653
familyVerrucomicrobiaceae-0.0480.03920.0653
genusAkkermansia-0.0480.03920.0653
speciesAkkermansia_muciniphila-0.0480.03920.0653
genusClostridiaceae_noname0.0480.03940.0653
speciesClostridiaceae_bacterium_JC1180.0480.03940.0653
speciesBacteroides_finegoldii0.0470.04040.0667
genusBurkholderiales_noname0.0470.0410.0672
speciesBurkholderiales_bacterium_1_1_470.0470.0410.0672
speciesBifidobacterium_angulatum-0.0470.04220.0689
speciesLactobacillus_crispatus0.0460.04590.0747
classMethanobacteria-0.0460.04690.0751
orderMethanobacteriales-0.0460.04690.0751
familyMethanobacteriaceae-0.0460.04690.0751
speciesDialister_invisus-0.0460.0470.0751
genusRuminococcus-0.0460.04710.0751
speciesStreptococcus_parasanguinis-0.0460.04710.0751
familyBurkholderiales_noname0.0460.04830.0768
familyBacteroidales_noname-0.0450.05160.0812
genusBacteroidales_noname-0.0450.05160.0812
speciesBacteroidales_bacterium_ph8-0.0450.05160.0812
speciesClostridium_spiroforme-0.0450.05260.0825
speciesBacteroides_sp_1_1_6-0.0450.05410.0846
speciesLactobacillus_vaginalis0.0440.05470.0852
speciesStreptococcus_vestibularis0.0440.05950.0924
genusActinobacillus-0.0430.06040.0932
speciesActinobacillus_unclassified-0.0430.06040.0932
speciesAlistipes_shahii-0.0430.06260.0962
genusVeillonella0.0430.06280.0962
speciesLactococcus_phage_936_sensu_lato-0.0430.06320.0965
genusLeuconostoc0.0430.06430.0979
familyActinomycetaceae0.0430.06490.0985
genusSiphoviridae_noname-0.0420.06640.1
speciesParaprevotella_clara-0.0420.06770.102
genusDialister-0.0420.06870.103
genusLachnospiraceae_noname0.0420.07140.107
speciesHoldemania_sp_AP20.0420.07190.107
genusGordonibacter0.0410.07470.111
speciesGordonibacter_pamelaeae0.0410.07470.111
speciesBacteroides_massiliensis0.0410.07530.111
speciesBifidobacterium_longum-0.0410.07840.116
genusSutterellaceae_unclassified-0.0410.07870.116
speciesParabacteroides_unclassified0.0410.07920.116
speciesPrevotella_buccae0.040.08050.118
speciesLactococcus_phage_jm2-0.040.08570.125
speciesBacteroides_barnesiae-0.0390.09080.132
speciesClostridium_sp_KLE_1755-0.0390.09120.132
familyPeptostreptococcaceae0.0390.09160.132
speciesClostridium_bartlettii0.0390.09320.134
speciesEubacterium_dolichum0.0390.09370.134
speciesParabacteroides_sp_D13-0.0380.09690.139
genusActinomyces0.0380.09720.139
familyAcidaminococcaceae-0.0380.1030.146
speciesRuminococcus_obeum-0.0380.1030.146
genusOlsenella-0.0370.1080.153
speciesLactococcus_phage_bIL67-0.0370.1090.154
genusParvimonas0.0370.110.155
speciesParvimonas_unclassified0.0370.1110.155
speciesEggerthella_sp_1_3_56FAA-0.0360.1180.164
speciesParabacteroides_distasonis0.0360.1180.164
speciesPeptostreptococcus_anaerobius0.0360.1190.165
speciesMegasphaera_elsdenii0.0360.1220.169
speciesVeillonella_dispar0.0350.1280.177
speciesStreptococcus_mitis_oralis_pneumoniae0.0350.1340.184
speciesStreptococcus_salivarius0.0350.1340.184
speciesStreptococcus_gordonii0.0350.1350.185
speciesSutterella_parvirubra0.0350.1360.186
familyStreptococcaceae0.0340.1450.197
speciesErysipelotrichaceae_bacterium_2_2_44A0.0340.1460.198
genusButyricimonas0.0330.1550.209
speciesButyricimonas_synergistica0.0330.1550.209
speciesBacteroides_sp_2_1_22-0.0330.1560.21
speciesKlebsiella_phage_KP36-0.0320.1610.215
speciesLactobacillus_gasseri0.0320.1610.215
speciesParabacteroides_sp_20_3-0.0320.1640.219
genusPropionibacterium-0.0320.1680.223
genusCoriobacteriaceae_noname0.0320.1690.224
genusCampylobacter0.0310.1780.235
classEpsilonproteobacteria0.0310.1810.238
orderCampylobacterales0.0310.1810.238
familyVeillonellaceae0.0310.1840.241
phylumBacteroidetes-0.0310.1850.241
classBacteroidia-0.0310.1850.241
orderBacteroidales-0.0310.1850.241
speciesCollinsella_tanakaei0.030.190.246
speciesHaemophilus_parainfluenzae-0.030.1930.25
orderPasteurellales-0.030.1950.251
familyPasteurellaceae-0.030.1950.251
speciesErysipelotrichaceae_bacterium_6_1_450.030.1970.253
genusHaemophilus-0.030.1990.255
speciesRuminococcus_callidus0.030.20.255
speciesMitsuokella_multacida-0.0290.2030.258
speciesBacteroides_caccae0.0290.2040.259
speciesAlistipes_senegalensis-0.0290.2050.259
genusAcidaminococcus0.0290.2120.267
speciesCoriobacteriaceae_bacterium_phI0.0290.2120.267
speciesOscillibacter_sp_KLE_1745-0.0280.2180.274
genusStreptococcus0.0280.2230.279
genusPeptostreptococcaceae_noname0.0280.2250.281
speciesLactococcus_phage_phi7-0.0280.230.286
familyCampylobacteraceae0.0280.2330.289
speciesEubacterium_cylindroides-0.0280.2330.289
speciesParabacteroides_merdae-0.0270.2380.294
speciesLactobacillus_oris0.0270.2430.299
speciesPropionibacterium_freudenreichii-0.0260.2620.322
genusLactococcus-0.0250.2720.333
orderActinomycetales0.0240.2920.356
speciesLactobacillus_rhamnosus-0.0240.2920.356
speciesAlistipes_putredinis-0.0240.3060.372
speciesRothia_mucilaginosa0.0240.3070.373
genusTunalikevirus-0.0230.3240.392
speciesDesulfovibrio_piger0.0230.3270.395
phylumActinobacteria-0.0230.3290.395
classActinobacteria-0.0230.3290.395
speciesAlistipes_finegoldii0.0220.3450.413
speciesStreptococcus_phage_Sfi210.0210.3530.422
genusOxalobacter0.0210.3610.429
speciesOxalobacter_formigenes0.0210.3610.429
genusStaphylococcus-0.0210.3640.432
speciesClostridium_sp_L2_50-0.0210.3710.439
familyOxalobacteraceae0.0210.3750.443
speciesLactobacillus_ruminis-0.020.3820.45
speciesCampylobacter_concisus-0.020.3920.46
speciesSlackia_piriformis0.020.3940.461
speciesStreptococcus_sanguinis-0.0190.4060.474
genusParabacteroides0.0190.4210.491
speciesAlistipes_indistinctus0.0180.4270.496
speciesBifidobacterium_bifidum-0.0180.4370.507
speciesHaemophilus_sputorum-0.0180.4450.515
speciesBacteroides_ovatus0.0180.4490.518
familyRikenellaceae-0.0170.4630.532
genusAlistipes-0.0170.4630.532
familyStaphylococcaceae-0.0160.4770.546
speciesBacteroides_salanitronis-0.0160.4790.547
orderPseudomonadales0.0160.4940.563
speciesRuminococcus_bromii-0.0150.5070.577
speciesHaemophilus_paraphrohaemolyticus0.0150.5140.583
speciesErysipelotrichaceae_bacterium_21_3-0.0150.5190.586
speciesBacteroides_coprophilus0.0150.5190.586
speciesBacteroides_vulgatus-0.0140.5360.603
speciesVeillonella_unclassified0.0140.5370.603
speciesBifidobacterium_breve0.0140.5430.609
speciesOscillibacter_unclassified-0.0130.5690.636
familyPodoviridae-0.0130.580.647
familySuccinivibrionaceae0.0110.6420.714
orderViruses_noname-0.0110.6430.714
speciesCollinsella_unclassified0.0110.6440.714
familyMicrococcaceae0.010.6540.72
genusSuccinatimonas0.010.6540.72
speciesSuccinatimonas_hippei0.010.6540.72
genusAnaerotruncus-0.010.6620.722
familyViruses_noname0.010.6630.722
genusViruses_noname0.010.6630.722
orderCoriobacteriales-0.010.6640.722
familyCoriobacteriaceae-0.010.6640.722
genusErysipelotrichaceae_noname0.010.6660.722
genusRothia0.010.6670.722
speciesHoldemania_unclassified0.010.670.724
speciesAlistipes_onderdonkii-0.0090.6840.737
speciesOdoribacter_splanchnicus0.0090.7030.756
speciesLactobacillus_delbrueckii-0.0090.710.762
speciesMethanobrevibacter_unclassified-0.0080.7140.764
speciesStreptococcus_mutans-0.0070.7490.8
speciesOdoribacter_laneus0.0070.7510.8
speciesLactobacillus_reuteri0.0070.7570.805
genusAdlercreutzia0.0060.7940.84
speciesAdlercreutzia_equolifaciens0.0060.7940.84
classNegativicutes0.0060.8070.85
orderSelenomonadales0.0060.8070.85
speciesCollinsella_intestinalis0.0050.8220.864
speciesEubacterium_sp_3_1_31-0.0050.8370.875
speciesBacteroides_fluxus-0.0050.8390.875
speciesVeillonella_atypica0.0050.8410.875
familyOscillospiraceae-0.0050.8420.875
genusOscillibacter-0.0050.8420.875
familyPrevotellaceae0.0040.8580.888
speciesBacteroides_cellulosilyticus0.0040.8590.888
speciesErysipelotrichaceae_bacterium_3_1_530.0040.860.888
speciesBacteroides_sp_4_3_47FAA0.0030.8940.921
speciesBacteroides_faecis-0.0030.90.925
speciesAggregatibacter_segnis0.0030.9060.93
speciesRuminococcus_sp_JC3040.0020.9230.942
genusMethanosphaera-0.0020.9240.942
speciesMethanosphaera_stadtmanae-0.0020.9240.942
speciesBacteroides_dorei-0.0020.9280.944
genusButyricicoccus-0.0020.9370.949
speciesButyricicoccus_pullicaecorum-0.0020.9370.949
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0020.9460.956
speciesDialister_succinatiphilus0.0010.9670.975
genusOdoribacter-0.0010.9820.988
speciesAlistipes_sp_AP110.00.9920.995
familyPorphyromonadaceae0.00.9940.995
genusAggregatibacter0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.01382577755820.005724381726126.17472936334e-107292.38962
Crohns diseaseSpain17660.02771747017130.007109875586220.00787590841561765225.4431
Type II diabetesChina1831850.03915759191250.02910314657420.2137552446491371345.3187
Rheumatoid arthritisChina127980.01824471126860.0138214495290.2572490627111064435.4954
Type II diabetesSweden53920.007805504586720.01354773776270.267077670547898130.4131
Ulcerative colitisSpain78660.003948831606790.007109875586220.3578914834021556151.3327
Liver cirrhosisChina1201140.02976442388090.01285893588350.839537323252808594.3431
Colorectal cancerAustria64350.07073155439010.01743111079720.9212882514912759893.3753
ObesityDenmark1691230.007100790630070.01387940986250.9428551558762923496.1297
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382