MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-13 23:39:43 PST
Job id & description: 1557, Test d
Query type: protein
Count queries & homologs: 1, 20
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|A0A369NIV7|DADH_EGGLN124853CompleteK08352COG0243ActinobacteriaEggerthella100.0100.0100.0
sp|A0A369NIV7|DADH_EGGLN132313CompleteK00183COG0243ActinobacteriaEggerthella100.096.358.58
sp|A0A369NIV7|DADH_EGGLN143436CompleteK00183COG0243unknownunknown99.2198.0452.59
sp|A0A369NIV7|DADH_EGGLN144287CompleteK00183COG0243unknownunknown99.4199.1752.55
sp|A0A369NIV7|DADH_EGGLN138885CompleteK00183COG0243unknownunknown100.098.0752.29
sp|A0A369NIV7|DADH_EGGLN151150CompleteK00183COG0243ActinobacteriaEggerthella99.6198.8451.57
sp|A0A369NIV7|DADH_EGGLN155324CompleteK00183COG0243unknownunknown99.7199.8950.98
sp|A0A369NIV7|DADH_EGGLN160097Lack 5'-endK08352COG0243unknownunknown95.2899.7951.47
sp|A0A369NIV7|DADH_EGGLN145973CompleteK00183COG0243ActinobacteriaEggerthella100.0100.050.87
sp|A0A369NIV7|DADH_EGGLN134917CompleteK00183COG0243unknownunknown99.6199.2949.29
sp|A0A369NIV7|DADH_EGGLN131001CompleteK00183COG0243ActinobacteriaEggerthella99.2198.744.17
sp|A0A369NIV7|DADH_EGGLN118545CompleteK00183COG0243ActinobacteriaEggerthella100.099.8143.77
sp|A0A369NIV7|DADH_EGGLN115564CompleteK00183COG0243Actinobacteriaunknown100.099.8142.83
sp|A0A369NIV7|DADH_EGGLN111462CompleteK00183COG0243ActinobacteriaEggerthella100.099.8143.76
sp|A0A369NIV7|DADH_EGGLN230231Lack 5'-endK00183COG0243unknownunknown83.5899.5249.49
sp|A0A369NIV7|DADH_EGGLN66500CompleteK00183COG0243unknownunknown99.897.0637.64
sp|A0A369NIV7|DADH_EGGLN130597CompleteK00183COG0243ActinobacteriaSlackia99.7199.640.66
sp|A0A369NIV7|DADH_EGGLN89880CompleteK00183COG0243ActinobacteriaEggerthella99.5198.4638.66
sp|A0A369NIV7|DADH_EGGLN160951Lack 5'-endK00183COG0243Actinobacteriaunknown88.6999.7940.29
sp|A0A369NIV7|DADH_EGGLN260822Lack 3'-endK00183COG0243Actinobacteriaunknown76.8999.542.02
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderCoriobacteriales0.6398.14e-2151.92e-212
familyCoriobacteriaceae0.6398.14e-2151.92e-212
genusEggerthella0.6352.44e-2113.84e-209
genusAdlercreutzia0.6255.74e-2035.42e-201
speciesAdlercreutzia_equolifaciens0.6255.74e-2035.42e-201
speciesEggerthella_unclassified0.6095.05e-1903.97e-188
speciesEggerthella_lenta0.5697.01e-1614.73e-159
genusGordonibacter0.5374.41e-1402.31e-138
speciesGordonibacter_pamelaeae0.5374.41e-1402.31e-138
phylumActinobacteria0.513.06e-1241.31e-122
classActinobacteria0.513.06e-1241.31e-122
speciesRuminococcus_obeum0.4851.13e-1104.44e-109
speciesEubacterium_hallii0.4546.59e-962.39e-94
genusBlautia0.4466.9e-922.33e-90
speciesRuminococcus_sp_5_1_39BFAA0.4457.67e-922.41e-90
genusRuminococcus0.4241.6e-824.72e-81
genusDorea0.4022.13e-735.91e-72
speciesRuminococcus_torques0.3985.47e-721.43e-70
speciesDorea_formicigenerans0.3921.34e-693.33e-68
phylumBacteroidetes-0.3853.68e-678.13e-66
classBacteroidia-0.3853.79e-678.13e-66
orderBacteroidales-0.3853.79e-678.13e-66
genusAnaerostipes0.377.26e-621.49e-60
speciesLachnospiraceae_bacterium_5_1_63FAA0.3671.17e-602.25e-59
orderBifidobacteriales0.3671.24e-602.25e-59
familyBifidobacteriaceae0.3671.24e-602.25e-59
genusBifidobacterium0.3653.73e-606.52e-59
speciesBifidobacterium_longum0.3572.1e-573.54e-56
genusLachnospiraceae_noname0.3535.72e-569.31e-55
classClostridia0.347.5e-521.14e-50
orderClostridiales0.347.5e-521.14e-50
speciesAnaerostipes_hadrus0.3361.31e-501.93e-49
familyActinomycetaceae0.3213.8e-465.44e-45
genusActinomyces0.3214.31e-465.98e-45
genusHoldemania0.321.2e-451.62e-44
speciesClostridium_leptum0.3184.13e-455.41e-44
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3112.79e-433.56e-42
familyRuminococcaceae0.3034.57e-415.68e-40
speciesStreptococcus_thermophilus0.3021.12e-401.36e-39
speciesDorea_longicatena0.3012.23e-402.63e-39
familySutterellaceae-0.2981.14e-391.31e-38
phylumFirmicutes0.2932.67e-383e-37
speciesAnaerotruncus_colihominis0.291.8e-371.98e-36
speciesBlautia_hydrogenotrophica0.2892.22e-372.38e-36
familyLachnospiraceae0.2861.33e-361.4e-35
classBetaproteobacteria-0.2821.79e-351.82e-34
genusHaemophilus-0.2821.81e-351.82e-34
speciesLachnospiraceae_bacterium_5_1_57FAA0.2822e-351.97e-34
speciesCoprococcus_comes0.2812.94e-352.83e-34
speciesHaemophilus_parainfluenzae-0.2813.41e-353.22e-34
orderPasteurellales-0.2799.94e-359.02e-34
familyPasteurellaceae-0.2799.94e-359.02e-34
speciesErysipelotrichaceae_bacterium_6_1_450.2791.07e-349.53e-34
speciesErysipelotrichaceae_bacterium_2_2_44A0.2781.71e-341.49e-33
genusCollinsella0.2763.65e-343.13e-33
speciesErysipelotrichaceae_bacterium_21_30.2764.08e-343.44e-33
orderBurkholderiales-0.2732.7e-332.24e-32
familyStreptococcaceae0.2636.16e-315.01e-30
orderActinomycetales0.262.62e-302.1e-29
genusStreptococcus0.2589.81e-307.72e-29
speciesLachnospiraceae_bacterium_1_4_56FAA0.2562.46e-291.9e-28
speciesEubacterium_ramulus0.2545.92e-294.51e-28
speciesCoprococcus_catus0.2546.74e-295.05e-28
genusSolobacterium0.2496.24e-284.53e-27
speciesSolobacterium_moorei0.2496.24e-284.53e-27
classBacilli0.2471.92e-271.37e-26
orderLactobacillales0.2463.06e-272.16e-26
familyPrevotellaceae-0.2431.43e-269.93e-26
genusPrevotella-0.2422.07e-261.42e-25
speciesSubdoligranulum_sp_4_3_54A2FAA0.2413.82e-262.58e-25
speciesCollinsella_aerofaciens0.2399.4e-266.25e-25
genusCoprococcus0.2358.53e-255.59e-24
speciesPropionibacterium_freudenreichii0.2331.57e-241.02e-23
speciesRuminococcus_bromii0.2322.98e-241.9e-23
speciesClostridium_hathewayi0.2272.67e-231.68e-22
speciesBlautia_producta0.2272.9e-231.8e-22
speciesLachnospiraceae_bacterium_1_1_57FAA0.2264.69e-232.87e-22
speciesClostridium_asparagiforme0.2248.67e-235.25e-22
genusCoprobacillus0.2241.31e-227.83e-22
speciesPrevotella_copri-0.2231.43e-228.44e-22
genusPropionibacterium0.2232.05e-221.19e-21
familyBacteroidaceae-0.2121.62e-209.21e-20
genusBacteroides-0.2121.62e-209.21e-20
speciesHoldemania_filiformis0.2122.06e-201.16e-19
speciesClostridium_bartlettii0.2113e-201.67e-19
orderBacillales0.2113.45e-201.89e-19
speciesClostridium_citroniae0.2096.44e-203.49e-19
speciesPrevotella_stercorea-0.2088.5e-204.56e-19
speciesStreptococcus_sanguinis0.2071.41e-197.48e-19
genusLeuconostoc0.2052.9e-191.52e-18
classErysipelotrichia0.2038.86e-194.5e-18
orderErysipelotrichales0.2038.86e-194.5e-18
familyErysipelotrichaceae0.2038.86e-194.5e-18
familyBacillales_noname0.2021.21e-186.01e-18
genusGemella0.2021.21e-186.01e-18
speciesStreptococcus_salivarius0.22.7e-181.33e-17
genusLactococcus0.1979.16e-184.46e-17
speciesBifidobacterium_animalis0.1961.21e-175.83e-17
speciesClostridium_bolteae0.1942.91e-171.39e-16
speciesClostridium_symbiosum0.1942.94e-171.39e-16
genusSubdoligranulum0.1933.57e-171.67e-16
familyClostridiales_Family_XI_Incertae_Sedis0.1919.59e-174.44e-16
speciesCoprobacillus_unclassified0.191.37e-166.28e-16
familyEnterococcaceae0.1882.4e-161.09e-15
genusEnterococcus0.1864.83e-162.17e-15
speciesLactobacillus_delbrueckii0.1865.22e-162.32e-15
speciesLactococcus_lactis0.1856.4e-162.82e-15
speciesEubacterium_sp_3_1_310.1848.96e-163.92e-15
speciesSubdoligranulum_unclassified0.1822.57e-151.11e-14
familyEubacteriaceae0.183.7e-151.59e-14
genusEubacterium0.184.52e-151.92e-14
genusParabacteroides-0.1795.99e-152.52e-14
speciesBacteroides_vulgatus-0.1796.52e-152.72e-14
speciesStreptococcus_parasanguinis0.1787.69e-153.18e-14
familyPeptostreptococcaceae0.1787.87e-153.23e-14
genusSutterellaceae_unclassified-0.1742.99e-141.22e-13
familyClostridiaceae0.1743.36e-141.36e-13
genusMegasphaera-0.1743.64e-141.46e-13
speciesClostridium_ramosum0.1734.79e-141.9e-13
speciesLactobacillus_casei_paracasei0.1735.5e-142.16e-13
genusClostridium0.1726.11e-142.38e-13
speciesHoldemania_unclassified0.171.51e-135.84e-13
familyPorphyromonadaceae-0.1691.98e-137.6e-13
speciesPrevotella_buccae-0.1664.47e-131.7e-12
familyLeuconostocaceae0.1665.31e-132.01e-12
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1657.43e-132.78e-12
familyPropionibacteriaceae0.1649.36e-133.46e-12
genusPeptostreptococcaceae_noname0.1649.38e-133.46e-12
speciesVeillonella_dispar-0.1649.92e-133.63e-12
phylumVerrucomicrobia0.1631.29e-124.51e-12
classVerrucomicrobiae0.1631.29e-124.51e-12
orderVerrucomicrobiales0.1631.29e-124.51e-12
familyVerrucomicrobiaceae0.1631.29e-124.51e-12
genusAkkermansia0.1631.29e-124.51e-12
speciesAkkermansia_muciniphila0.1631.29e-124.51e-12
speciesVeillonella_atypica-0.1631.45e-125.03e-12
speciesOdoribacter_splanchnicus-0.1621.87e-126.44e-12
speciesVeillonella_unclassified-0.1612.44e-128.35e-12
speciesCampylobacter_concisus-0.163.5e-121.19e-11
speciesEnterococcus_faecium0.1594.7e-121.58e-11
genusOdoribacter-0.1594.97e-121.66e-11
speciesFusobacterium_mortiferum-0.1595.27e-121.75e-11
speciesEggerthella_sp_1_3_56FAA0.1585.49e-121.81e-11
speciesLactobacillus_rhamnosus0.1586.55e-122.15e-11
speciesClostridium_clostridioforme0.1578.92e-122.9e-11
genusParvimonas0.1571e-113.23e-11
speciesParvimonas_unclassified0.1561.04e-113.34e-11
speciesDialister_invisus0.1542.36e-117.53e-11
speciesEubacterium_limosum0.1523.87e-111.23e-10
speciesRuminococcus_sp_JC3040.1514.63e-111.46e-10
speciesErysipelotrichaceae_bacterium_3_1_530.1514.72e-111.48e-10
speciesStreptococcus_australis0.1515.64e-111.75e-10
speciesBacteroides_plebeius-0.1515.94e-111.82e-10
genusVeillonella-0.1515.95e-111.82e-10
speciesEubacterium_ventriosum0.157.42e-112.26e-10
speciesBifidobacterium_adolescentis0.158.17e-112.47e-10
genusFlavonifractor0.1471.69e-105.05e-10
speciesFlavonifractor_plautii0.1471.69e-105.05e-10
genusCoriobacteriaceae_noname0.1444.37e-101.3e-09
genusSutterella-0.1444.46e-101.32e-09
speciesCoriobacteriaceae_bacterium_phI0.1435.06e-101.48e-09
familyClostridiales_noname0.1426.28e-101.83e-09
genusErysipelotrichaceae_noname0.1426.79e-101.97e-09
speciesClostridiales_bacterium_1_7_47FAA0.1427.91e-102.28e-09
genusAnaerotruncus0.141.11e-093.18e-09
genusActinobacillus-0.141.28e-093.62e-09
speciesActinobacillus_unclassified-0.141.28e-093.62e-09
speciesSutterella_wadsworthensis-0.1382.17e-096.1e-09
speciesBifidobacterium_bifidum0.1363.12e-098.71e-09
classNegativicutes-0.1363.89e-091.07e-08
orderSelenomonadales-0.1363.89e-091.07e-08
speciesPeptostreptococcus_anaerobius0.1346.1e-091.67e-08
speciesVeillonella_parvula-0.1321.08e-082.95e-08
genusDialister0.1321.13e-083.07e-08
speciesMegasphaera_micronuciformis-0.1282.6e-087.01e-08
speciesOscillibacter_unclassified0.1282.62e-087.01e-08
speciesLactobacillus_plantarum0.1282.63e-087.01e-08
phylumFusobacteria-0.1273.25e-088.52e-08
classFusobacteriia-0.1273.25e-088.52e-08
orderFusobacteriales-0.1273.25e-088.52e-08
familyLactobacillaceae0.1273.67e-089.57e-08
familyOscillospiraceae0.1264.33e-081.12e-07
genusOscillibacter0.1264.33e-081.12e-07
speciesParabacteroides_merdae-0.1264.56e-081.17e-07
genusPeptostreptococcus0.1256.17e-081.57e-07
speciesLachnospiraceae_bacterium_3_1_46FAA0.1246.78e-081.72e-07
speciesStreptococcus_mutans0.1247.17e-081.81e-07
speciesBacteroides_ovatus-0.1221.12e-072.81e-07
familyFusobacteriaceae-0.1221.19e-072.97e-07
genusPeptoniphilus0.1221.33e-073.3e-07
speciesBacteroides_xylanisolvens-0.1211.53e-073.78e-07
speciesBifidobacterium_catenulatum0.1211.72e-074.23e-07
genusFusobacterium-0.121.95e-074.77e-07
speciesLactobacillus_ruminis-0.121.99e-074.84e-07
speciesHoldemania_sp_AP20.122.14e-075.18e-07
speciesParaprevotella_xylaniphila-0.122.16e-075.2e-07
speciesStreptococcus_anginosus0.1192.61e-076.25e-07
genusLactobacillus0.1192.73e-076.51e-07
speciesBacteroides_stercoris-0.1174.01e-079.51e-07
genusClostridiales_noname0.1164.43e-071.05e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1155.97e-071.4e-06
speciesBacteroides_thetaiotaomicron-0.1156.17e-071.44e-06
speciesMegasphaera_unclassified-0.1156.85e-071.59e-06
phylumProteobacteria-0.1147.3e-071.69e-06
speciesHaemophilus_paraphrohaemolyticus-0.1131.03e-062.37e-06
genusRothia0.1121.13e-062.59e-06
speciesStreptococcus_gordonii0.1121.25e-062.85e-06
familyMicrococcaceae0.1121.27e-062.88e-06
speciesRuminococcus_gnavus0.1111.38e-063.12e-06
genusClostridiaceae_noname0.111.76e-063.94e-06
speciesClostridiaceae_bacterium_JC1180.111.76e-063.94e-06
speciesLachnospiraceae_bacterium_7_1_58FAA0.1092.12e-064.72e-06
speciesStreptococcus_vestibularis0.1092.33e-065.16e-06
genusAggregatibacter-0.1092.52e-065.56e-06
speciesEubacterium_rectale0.1083.17e-066.96e-06
speciesDesulfovibrio_piger-0.1073.44e-067.52e-06
classEpsilonproteobacteria-0.1073.9e-068.44e-06
orderCampylobacterales-0.1073.9e-068.44e-06
orderAeromonadales-0.1064.79e-061.03e-05
familyStaphylococcaceae0.1055.79e-061.24e-05
genusParaprevotella-0.1046.18e-061.32e-05
speciesBacteroides_faecis-0.1046.49e-061.38e-05
speciesMitsuokella_multacida-0.1046.63e-061.4e-05
speciesBifidobacterium_pseudocatenulatum0.1047.12e-061.5e-05
speciesClostridium_spiroforme0.1037.9e-061.66e-05
speciesParaprevotella_unclassified-0.1038.36e-061.75e-05
speciesBacteroides_dorei-0.1029.22e-061.92e-05
genusStaphylococcus0.1029.82e-062.03e-05
speciesAlistipes_sp_AP110.1029.98e-062.06e-05
speciesLactobacillus_gasseri0.1011.17e-052.4e-05
speciesClostridium_sp_KLE_17550.1011.3e-052.66e-05
genusParasutterella-0.11.43e-052.9e-05
speciesParasutterella_excrementihominis-0.11.43e-052.9e-05
speciesBilophila_wadsworthia0.11.47e-052.97e-05
speciesAggregatibacter_segnis-0.11.49e-052.99e-05
speciesRothia_mucilaginosa0.0991.9e-053.8e-05
speciesPorphyromonas_asaccharolytica0.0982.05e-054.08e-05
genusRuminococcaceae_noname0.0972.87e-055.67e-05
speciesRuminococcaceae_bacterium_D160.0972.87e-055.67e-05
speciesKlebsiella_pneumoniae-0.0972.9e-055.7e-05
genusBilophila0.0963.01e-055.9e-05
familyVeillonellaceae-0.0953.83e-057.47e-05
familyCampylobacteraceae-0.0954.02e-057.81e-05
speciesEubacterium_dolichum0.0954.05e-057.83e-05
speciesGemella_morbillorum0.0954.23e-058.12e-05
speciesBilophila_unclassified0.0954.23e-058.12e-05
speciesBacteroides_coprocola-0.0944.95e-059.46e-05
genusCampylobacter-0.0935.17e-059.84e-05
genusPseudoflavonifractor0.0935.88e-050.000111
speciesPseudoflavonifractor_capillosus0.0935.88e-050.000111
genusCatenibacterium-0.0926.55e-050.000123
speciesCatenibacterium_mitsuokai-0.0926.55e-050.000123
speciesClostridium_perfringens-0.0926.84e-050.000128
speciesParaprevotella_clara-0.0926.97e-050.00013
speciesAnaerostipes_unclassified0.0917.87e-050.000146
genusPorphyromonas0.099.45e-050.000174
speciesMegamonas_unclassified-0.099.55e-050.000175
speciesTuricibacter_sanguinis0.099.87e-050.000181
familyAcidaminococcaceae-0.090.0001020.000186
speciesLachnospiraceae_bacterium_6_1_63FAA0.0890.0001070.000194
genusMegamonas-0.0890.0001080.000195
speciesCoprobacillus_sp_29_10.0890.0001110.0002
genusButyricimonas-0.0880.0001280.000229
speciesButyricimonas_synergistica-0.0880.0001280.000229
speciesBacteroides_coprophilus-0.0860.0002130.000379
genusPhascolarctobacterium-0.0850.0002170.000384
speciesPhascolarctobacterium_succinatutens-0.0850.0002170.000384
speciesLactobacillus_acidophilus0.0850.0002340.000412
speciesParabacteroides_unclassified-0.0840.0002650.000465
speciesDorea_unclassified-0.0840.000270.000472
speciesEscherichia_unclassified0.0830.0003360.000585
genusTuricibacter0.0830.000340.00059
speciesEubacterium_eligens-0.0820.0003610.000624
speciesCoprobacillus_sp_D60.0810.0004250.000732
speciesAlistipes_shahii-0.0810.0004370.00075
speciesRoseburia_inulinivorans-0.0810.000460.000787
speciesBifidobacterium_dentium0.080.0005070.000864
speciesTuricibacter_unclassified0.080.000510.000866
speciesPrevotella_bivia0.080.0005590.000946
speciesPorphyromonas_uenonis0.0790.0006140.00103
speciesFusobacterium_ulcerans-0.0790.0006140.00103
speciesLactobacillus_sanfranciscensis0.0790.0006190.00104
speciesMegamonas_hypermegale-0.0790.0006380.00106
speciesEnterococcus_faecalis0.0780.0006980.00116
speciesMegasphaera_elsdenii-0.0780.0007240.0012
familySuccinivibrionaceae-0.0780.0007880.0013
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0770.000840.00138
speciesRuminococcus_lactaris0.0760.0009610.00157
genusSuccinatimonas-0.0760.0009930.00162
speciesSuccinatimonas_hippei-0.0760.0009930.00162
speciesBacteroides_massiliensis-0.0750.001250.00203
speciesBacteroides_caccae-0.0740.001340.00217
classDeltaproteobacteria0.0740.001380.00221
orderDesulfovibrionales0.0740.001380.00221
familyDesulfovibrionaceae0.0740.001380.00221
speciesStreptococcus_mitis_oralis_pneumoniae0.0730.001520.00242
genusOlsenella0.0730.001670.00265
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0730.001690.00268
speciesLactobacillus_mucosae-0.0720.00180.00284
speciesMegamonas_rupellensis-0.0720.001860.00293
genusButyrivibrio-0.0710.002120.00332
speciesHaemophilus_sputorum-0.0710.002260.00353
orderPseudomonadales0.0690.0030.00467
speciesMegamonas_funiformis-0.0670.003690.00573
genusKlebsiella-0.0670.003740.00579
speciesParabacteroides_sp_D13-0.0670.003870.00597
speciesParabacteroides_distasonis-0.0650.005220.00803
genusMitsuokella-0.0640.005390.00826
speciesButyrivibrio_crossotus-0.0630.006170.00942
speciesOlsenella_unclassified0.0630.006330.00964
speciesMitsuokella_unclassified-0.0630.006370.00967
speciesFusobacterium_nucleatum-0.0620.007460.0113
speciesAlistipes_senegalensis-0.0620.007540.0114
speciesKlebsiella_oxytoca0.060.008960.0135
speciesEubacterium_cylindroides0.060.009670.0145
speciesEubacterium_biforme-0.0580.01150.0172
speciesPeptostreptococcus_stomatis0.0580.01170.0174
speciesOscillibacter_sp_KLE_1728-0.0580.01190.0177
speciesRuminococcus_callidus0.0570.0130.0192
speciesFusobacterium_varium-0.0570.01390.0205
speciesLactococcus_phage_P6800.0570.01430.021
speciesLactobacillus_salivarius-0.0560.01480.0217
speciesBacteroides_fragilis-0.0560.01540.0225
genusDesulfovibrio-0.0560.01610.0235
speciesMethanobrevibacter_unclassified0.0550.01690.0245
familyBurkholderiales_noname-0.0540.01920.0278
genusEscherichia0.0540.02060.0297
speciesAcidaminococcus_fermentans-0.0530.02130.0307
genusOxalobacter-0.0530.02230.0319
speciesOxalobacter_formigenes-0.0530.02230.0319
classMethanobacteria0.0530.02260.032
orderMethanobacteriales0.0530.02260.032
familyMethanobacteriaceae0.0530.02260.032
speciesAlistipes_putredinis-0.0520.02340.0331
genusMethanobrevibacter0.0520.02350.0331
genusSiphoviridae_noname0.0520.02360.0332
genusBurkholderiales_noname-0.0520.02390.0334
speciesBurkholderiales_bacterium_1_1_47-0.0520.02390.0334
speciesAlistipes_sp_HGB5-0.0510.02610.0363
familyOxalobacteraceae-0.0510.02740.038
speciesLactococcus_garvieae0.0510.02890.04
familyMyoviridae-0.050.030.0414
speciesEubacterium_siraeum0.050.03120.0429
speciesAcidaminococcus_intestini-0.0490.03270.0449
speciesMethanobrevibacter_smithii0.0490.03360.046
genusTunalikevirus-0.0490.03450.0471
speciesEscherichia_coli0.0490.03530.048
phylumEuryarchaeota0.0480.03650.0495
speciesWeissella_cibaria0.0480.03740.0506
speciesLeuconostoc_lactis0.0480.03890.0525
genusRoseburia-0.0470.04270.0574
genusCoprobacter-0.0460.0450.0602
speciesCoprobacter_fastidiosus-0.0460.0450.0602
speciesBacteroides_salanitronis-0.0460.04770.0636
speciesOdoribacter_laneus0.0450.05040.067
speciesBacteroides_nordii-0.0450.05150.0683
genusButyricicoccus0.0440.05440.0715
speciesButyricicoccus_pullicaecorum0.0440.05440.0715
speciesEnterobacter_aerogenes-0.0440.05440.0715
speciesStreptococcus_phage_Sfi210.0440.05650.0741
orderEnterobacteriales0.0440.05770.0752
familyEnterobacteriaceae0.0440.05770.0752
speciesBacteroides_intestinalis-0.0440.0580.0754
speciesLactococcus_phage_936_sensu_lato-0.0430.06520.0845
speciesSlackia_piriformis-0.0420.06680.0864
genusMyoviridae_noname-0.0410.07490.0966
speciesKlebsiella_phage_KP36-0.040.08020.103
speciesAlistipes_finegoldii-0.040.08270.106
speciesAlistipes_onderdonkii0.040.08380.107
speciesBacteroides_finegoldii-0.0390.0910.116
genusWeissella0.0390.09390.119
speciesRoseburia_hominis0.0380.10.127
phylumViruses_noname0.0380.1030.13
classViruses_noname0.0380.1030.13
speciesBifidobacterium_angulatum-0.0370.1080.136
genusPantoea-0.0370.1090.136
speciesPantoea_unclassified-0.0370.1090.136
speciesLactobacillus_fermentum0.0360.1190.149
speciesOscillibacter_sp_KLE_17450.0360.1210.151
genusAcidaminococcaceae_unclassified-0.0360.1230.153
familySiphoviridae0.0350.1290.16
speciesAlistipes_unclassified0.0350.1340.166
speciesCoprococcus_eutactus-0.0340.140.173
orderViruses_noname0.0330.1590.195
classGammaproteobacteria-0.0320.1630.199
genusProteus-0.0320.1630.199
speciesBacteroides_eggerthii-0.0320.1680.205
genusMethanosphaera0.0320.170.206
speciesMethanosphaera_stadtmanae0.0320.170.206
speciesDialister_succinatiphilus-0.0320.170.206
speciesClostridium_sp_ATCC_BAA_4420.030.190.229
speciesLactococcus_phage_bIL670.030.2010.242
speciesSutterella_parvirubra-0.0290.2040.245
speciesLactobacillus_vaginalis0.0290.2070.248
speciesLactococcus_phage_jm20.0280.220.263
familyBacteroidales_noname0.0270.2370.281
genusBacteroidales_noname0.0270.2370.281
speciesBacteroidales_bacterium_ph80.0270.2370.281
speciesLactobacillus_reuteri0.0260.2580.305
familyRikenellaceae-0.0260.260.306
genusAlistipes-0.0260.260.306
genusSlackia-0.0260.2660.312
speciesPeptostreptococcaceae_noname_unclassified0.0260.2670.313
speciesBacteroides_fluxus0.0260.2680.313
speciesKlebsiella_unclassified0.0250.2740.319
speciesRuminococcus_champanellensis-0.0250.2760.321
speciesParabacteroides_goldsteinii-0.0250.2850.331
speciesBacteroides_barnesiae-0.0250.2880.333
genusEnterobacter-0.0240.2930.338
speciesLactobacillus_amylovorus0.0240.3040.35
speciesAnaerotruncus_unclassified0.0230.3150.362
speciesBacteroides_uniformis-0.0230.3170.363
speciesAcidaminococcus_unclassified0.0230.3220.368
speciesLactobacillus_oris0.0220.3350.382
speciesBacteroides_sp_1_1_6-0.0220.3370.383
genusC2likevirus0.0220.3510.398
speciesStreptococcus_pasteurianus-0.0220.3520.398
speciesEnterobacter_cloacae-0.0210.3560.402
speciesBacteroides_oleiciplenus-0.0210.3720.419
speciesDesulfovibrio_desulfuricans-0.020.3810.428
orderCaudovirales0.020.3830.428
familyViruses_noname-0.020.3840.428
genusViruses_noname-0.020.3840.428
speciesLactococcus_phage_phi7-0.020.3940.439
genusFaecalibacterium0.0190.4070.45
speciesC2likevirus_unclassified0.0190.4070.45
speciesFaecalibacterium_prausnitzii0.0190.4070.45
speciesParabacteroides_sp_20_30.0190.4150.458
speciesCollinsella_intestinalis0.0190.4210.463
speciesBacteroides_sp_2_1_22-0.0180.4340.476
genusLambdalikevirus0.0180.4430.485
speciesBifidobacterium_breve0.0170.4550.497
speciesBacteroides_pectinophilus-0.0160.4790.522
speciesCoprococcus_sp_ART55_1-0.0160.490.533
speciesBacteroides_clarus-0.0160.4920.534
speciesEnterobacteria_phage_HK5440.0160.5020.543
genusAcidaminococcus-0.0150.5060.547
speciesButyrivibrio_unclassified-0.0150.510.55
speciesParabacteroides_johnsonii-0.0150.5270.567
genusMorganella-0.0140.5330.57
speciesMorganella_morganii-0.0140.5330.57
speciesProteus_mirabilis-0.0130.5860.626
speciesLactobacillus_crispatus-0.0120.5970.636
speciesBacteroides_sp_3_1_19-0.0120.6180.657
speciesAlistipes_indistinctus0.0110.6230.661
speciesBacteroides_salyersiae-0.0110.6470.685
genusCitrobacter0.010.6510.687
speciesWeissella_confusa0.010.6580.693
genusPyramidobacter0.010.6780.711
speciesPyramidobacter_piscolens0.010.6780.711
speciesClostridium_nexile-0.0090.7120.745
speciesCitrobacter_unclassified0.0080.7180.75
speciesStreptococcus_lutetiensis0.0080.7380.769
speciesCollinsella_unclassified-0.0070.7590.789
speciesKlebsiella_sp_MS_92_3-0.0070.7660.795
familyPodoviridae0.0060.7830.81
speciesStreptococcus_infantarius0.0060.7980.822
speciesOdoribacter_unclassified-0.0060.7980.822
speciesRoseburia_unclassified0.0060.810.833
speciesCitrobacter_freundii0.0050.840.862
speciesBacteroides_sp_4_3_47FAA0.0020.9180.939
speciesBacteroides_cellulosilyticus-0.0020.9190.939
speciesCollinsella_tanakaei0.0020.9280.946
speciesRoseburia_intestinalis-0.0020.9320.948
speciesClostridium_sp_L2_50-0.0010.9510.965
phylumSynergistetes0.00.9880.994
classSynergistia0.00.9880.994
orderSynergistales0.00.9880.994
familySynergistaceae0.00.9880.994
genusBarnesiella0.00.9970.998
speciesBarnesiella_intestinihominis0.00.9970.998
speciesLachnospiraceae_bacterium_2_1_46FAA0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0008513203623030.001183867005550.00128535512687771025.8994
Type II diabetesChina1831850.004169206095050.001742976584360.0031897924382624698.15956
Type II diabetesDenmark752770.0018494862260.00133696142810.0451258560685695322.7915
ObesityDenmark1691230.001374430918390.001270806498270.114419192157792126.0465
Rheumatoid arthritisChina127980.006561536090610.005599083656790.162945030514758125.281
Crohns diseaseSpain17660.003416315169190.005322880106030.2762047679831871362.2211
Colorectal cancerAustria64350.02493456684140.03474575203690.4271146992571564752.9402
Ulcerative colitisSpain78660.004279744711280.005322880106030.8347149842292646587.3029
Type II diabetesSweden53920.007188302093390.007303113712330.8996409968832689091.0599
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382