MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-14 00:07:32 PST
Job id & description: 1558, Test h
Query type: protein
Count queries & homologs: 1, 11
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|A0A369MIX7|A0A369MIX7_EGGLN66097CompleteK00183COG0243ActinobacteriaEggerthella99.9299.9299.5
tr|A0A369MIX7|A0A369MIX7_EGGLN61844CompleteK00183COG0243unknownunknown97.499.4275.66
tr|A0A369MIX7|A0A369MIX7_EGGLN89880CompleteK00183COG0243ActinobacteriaEggerthella96.499.0960.56
tr|A0A369MIX7|A0A369MIX7_EGGLN66500CompleteK00183COG0243unknownunknown95.3996.6456.83
tr|A0A369MIX7|A0A369MIX7_EGGLN115564CompleteK00183COG0243Actinobacteriaunknown95.5699.3339.13
tr|A0A369MIX7|A0A369MIX7_EGGLN111462CompleteK00183COG0243ActinobacteriaEggerthella95.5699.3339.0
tr|A0A369MIX7|A0A369MIX7_EGGLN118545CompleteK00183COG0243ActinobacteriaEggerthella95.5699.3239.0
tr|A0A369MIX7|A0A369MIX7_EGGLN143436CompleteK00183COG0243unknownunknown95.1497.7337.35
tr|A0A369MIX7|A0A369MIX7_EGGLN160951Lack 5'-endK00183COG0243Actinobacteriaunknown85.8399.1436.49
tr|A0A369MIX7|A0A369MIX7_EGGLN260822Lack 3'-endK00183COG0243Actinobacteriaunknown72.5999.537.68
tr|A0A369MIX7|A0A369MIX7_EGGLN130597CompleteK00183COG0243ActinobacteriaSlackia95.3999.233.02
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusAdlercreutzia0.7221.08e-3002.55e-298
speciesAdlercreutzia_equolifaciens0.7221.08e-3002.55e-298
orderCoriobacteriales0.6242.19e-2022.58e-200
familyCoriobacteriaceae0.6242.19e-2022.58e-200
genusEggerthella0.5952.57e-1792.43e-177
speciesEggerthella_unclassified0.5724.38e-1633.45e-161
genusGordonibacter0.5533.68e-1502.17e-148
speciesGordonibacter_pamelaeae0.5533.68e-1502.17e-148
speciesEggerthella_lenta0.5253.72e-1331.95e-131
phylumActinobacteria0.4935.12e-1152.2e-113
classActinobacteria0.4935.12e-1152.2e-113
speciesRuminococcus_obeum0.4878.08e-1123.18e-110
speciesEubacterium_hallii0.451.03e-933.74e-92
speciesRuminococcus_sp_5_1_39BFAA0.4445.84e-911.97e-89
genusRuminococcus0.4311.67e-855.25e-84
genusBlautia0.4186.76e-801.99e-78
genusDorea0.3941.34e-703.72e-69
speciesDorea_formicigenerans0.3874.92e-681.29e-66
speciesRuminococcus_torques0.3832.72e-666.76e-65
phylumBacteroidetes-0.377.3e-621.61e-60
classBacteroidia-0.377.51e-621.61e-60
orderBacteroidales-0.377.51e-621.61e-60
speciesLachnospiraceae_bacterium_5_1_63FAA0.3685.22e-611.07e-59
genusLachnospiraceae_noname0.3537.54e-561.48e-54
orderBifidobacteriales0.354.16e-557.55e-54
familyBifidobacteriaceae0.354.16e-557.55e-54
genusBifidobacterium0.3491.13e-541.98e-53
genusAnaerostipes0.3476.27e-541.06e-52
orderClostridiales0.3443.91e-536.17e-52
classClostridia0.3443.92e-536.17e-52
speciesBifidobacterium_longum0.3438.51e-531.3e-51
speciesAnaerostipes_hadrus0.3316.12e-499.03e-48
speciesClostridium_leptum0.326.77e-469.68e-45
genusHoldemania0.327.39e-461.03e-44
familyRuminococcaceae0.3098.94e-431.21e-41
familyActinomycetaceae0.3043.25e-414.26e-40
genusActinomyces0.3043.42e-414.36e-40
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3035.66e-417.03e-40
speciesStreptococcus_thermophilus0.32.54e-403.01e-39
speciesDorea_longicatena0.32.55e-403.01e-39
speciesBlautia_hydrogenotrophica0.2957.16e-398.24e-38
speciesAnaerotruncus_colihominis0.2932.61e-382.93e-37
speciesCoprococcus_comes0.2911.04e-371.14e-36
phylumFirmicutes0.2892.11e-372.26e-36
familySutterellaceae-0.2845.39e-365.65e-35
familyLachnospiraceae0.2772.24e-342.3e-33
speciesErysipelotrichaceae_bacterium_6_1_450.2723.95e-333.97e-32
speciesCoprococcus_catus0.2716.44e-336.33e-32
genusCollinsella0.2692.29e-322.21e-31
speciesErysipelotrichaceae_bacterium_21_30.2651.72e-311.62e-30
classBetaproteobacteria-0.2651.88e-311.74e-30
speciesEubacterium_ramulus0.2652.04e-311.85e-30
genusHaemophilus-0.2621.08e-309.62e-30
speciesHaemophilus_parainfluenzae-0.2611.96e-301.71e-29
orderPasteurellales-0.263.68e-303.1e-29
familyPasteurellaceae-0.263.68e-303.1e-29
speciesErysipelotrichaceae_bacterium_2_2_44A0.2571.71e-291.42e-28
orderBurkholderiales-0.2562.81e-292.29e-28
familyStreptococcaceae0.2554e-293.2e-28
genusCoprococcus0.2513.62e-282.85e-27
genusStreptococcus0.2496.58e-285.09e-27
speciesLachnospiraceae_bacterium_5_1_57FAA0.2497.82e-285.95e-27
speciesLachnospiraceae_bacterium_1_1_57FAA0.2498.61e-286.45e-27
speciesRuminococcus_bromii0.2441.11e-268.19e-26
genusPrevotella-0.2431.67e-261.21e-25
orderActinomycetales0.2414.89e-263.5e-25
genusSolobacterium0.2381.66e-251.15e-24
speciesSolobacterium_moorei0.2381.66e-251.15e-24
speciesPropionibacterium_freudenreichii0.2382.16e-251.48e-24
familyPrevotellaceae-0.2364.81e-253.24e-24
speciesLachnospiraceae_bacterium_1_4_56FAA0.2356.82e-254.53e-24
speciesCollinsella_aerofaciens0.2341.06e-246.95e-24
classBacilli0.2332.01e-241.3e-23
orderLactobacillales0.2322.99e-241.91e-23
speciesSubdoligranulum_sp_4_3_54A2FAA0.2314.7e-242.96e-23
genusPropionibacterium0.2272.72e-231.69e-22
speciesPrevotella_copri-0.2213.29e-222.02e-21
speciesHoldemania_filiformis0.226.09e-223.69e-21
speciesClostridium_bartlettii0.2163.15e-211.88e-20
familyEubacteriaceae0.2146.87e-214.05e-20
familyBacteroidaceae-0.2148.36e-214.81e-20
genusBacteroides-0.2148.36e-214.81e-20
genusEubacterium0.2148.84e-215.03e-20
speciesClostridium_asparagiforme0.2081.09e-196.12e-19
genusLeuconostoc0.2021.07e-185.94e-18
speciesPrevotella_stercorea-0.22.21e-181.21e-17
genusLactococcus0.1993.63e-181.97e-17
speciesStreptococcus_sanguinis0.1984.6e-182.47e-17
speciesStreptococcus_salivarius0.1961.43e-177.58e-17
familyPeptostreptococcaceae0.1933.99e-172.09e-16
speciesBlautia_producta0.1925.55e-172.88e-16
orderBacillales0.1926.12e-173.14e-16
genusSubdoligranulum0.1918.72e-174.43e-16
speciesClostridium_hathewayi0.191.32e-166.63e-16
speciesBifidobacterium_animalis0.1882.15e-161.07e-15
speciesLactococcus_lactis0.1849.9e-164.87e-15
speciesEubacterium_ventriosum0.1831.57e-157.64e-15
speciesClostridium_citroniae0.1831.63e-157.85e-15
familyClostridiales_Family_XI_Incertae_Sedis0.1831.71e-158.15e-15
familyBacillales_noname0.1813.15e-151.47e-14
genusGemella0.1813.15e-151.47e-14
speciesSubdoligranulum_unclassified0.1813.38e-151.56e-14
speciesHoldemania_unclassified0.1813.53e-151.62e-14
genusMegasphaera-0.183.7e-151.68e-14
genusParabacteroides-0.184.49e-152.02e-14
genusPeptostreptococcaceae_noname0.184.66e-152.08e-14
speciesEubacterium_sp_3_1_310.1788.27e-153.65e-14
genusCoprobacillus0.1781.05e-144.59e-14
genusSutterellaceae_unclassified-0.1762.1e-149.09e-14
speciesLactobacillus_delbrueckii0.1734.99e-142.14e-13
speciesLactobacillus_casei_paracasei0.1735.1e-142.17e-13
familyEnterococcaceae0.1726.07e-142.56e-13
speciesPrevotella_buccae-0.1727.02e-142.81e-13
phylumVerrucomicrobia0.1727.08e-142.81e-13
classVerrucomicrobiae0.1727.08e-142.81e-13
orderVerrucomicrobiales0.1727.08e-142.81e-13
familyVerrucomicrobiaceae0.1727.08e-142.81e-13
genusAkkermansia0.1727.08e-142.81e-13
speciesAkkermansia_muciniphila0.1727.08e-142.81e-13
genusEnterococcus0.1719.79e-143.85e-13
speciesDialister_invisus0.1682.71e-131.06e-12
speciesBacteroides_vulgatus-0.1673.41e-131.32e-12
familyPropionibacteriaceae0.1664.7e-131.8e-12
speciesStreptococcus_parasanguinis0.1665.23e-131.99e-12
speciesVeillonella_atypica-0.1656.33e-132.39e-12
speciesCampylobacter_concisus-0.1657.3e-132.73e-12
speciesVeillonella_dispar-0.1641.05e-123.9e-12
speciesClostridium_symbiosum0.1641.11e-124.09e-12
familyLeuconostocaceae0.1631.19e-124.35e-12
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1631.41e-125.12e-12
speciesLactobacillus_rhamnosus0.1621.72e-126.2e-12
speciesClostridium_bolteae0.1622.06e-127.37e-12
speciesVeillonella_unclassified-0.163.74e-121.33e-11
familyPorphyromonadaceae-0.1594.96e-121.75e-11
genusParvimonas0.1578.88e-123.1e-11
speciesParvimonas_unclassified0.1579.24e-123.21e-11
classErysipelotrichia0.1541.95e-116.62e-11
orderErysipelotrichales0.1541.95e-116.62e-11
familyErysipelotrichaceae0.1541.95e-116.62e-11
speciesEnterococcus_faecium0.1541.97e-116.64e-11
speciesFusobacterium_mortiferum-0.1532.96e-119.91e-11
speciesEggerthella_sp_1_3_56FAA0.1523.71e-111.23e-10
speciesStreptococcus_australis0.1515.18e-111.71e-10
genusVeillonella-0.156.16e-112.02e-10
genusDialister0.158.03e-112.61e-10
phylumFusobacteria-0.1499.04e-112.88e-10
classFusobacteriia-0.1499.04e-112.88e-10
orderFusobacteriales-0.1499.04e-112.88e-10
speciesCoprobacillus_unclassified0.1481.1e-103.48e-10
speciesRuminococcus_sp_JC3040.1481.28e-104.03e-10
speciesOdoribacter_splanchnicus-0.1481.33e-104.16e-10
genusSutterella-0.1462.48e-107.7e-10
genusAnaerotruncus0.1453.34e-101.03e-09
genusFusobacterium-0.1443.5e-101.07e-09
familyFusobacteriaceae-0.1444.18e-101.26e-09
genusActinobacillus-0.1444.19e-101.26e-09
speciesActinobacillus_unclassified-0.1444.19e-101.26e-09
speciesEubacterium_rectale0.1435.76e-101.72e-09
speciesMegasphaera_micronuciformis-0.1426.65e-101.97e-09
speciesBifidobacterium_adolescentis0.1427.82e-102.31e-09
genusOdoribacter-0.1418.71e-102.55e-09
speciesSutterella_wadsworthensis-0.1391.8e-095.24e-09
familyClostridiaceae0.1381.89e-095.47e-09
genusClostridium0.1372.66e-097.66e-09
speciesLactobacillus_plantarum0.1363.66e-091.05e-08
speciesBacteroides_plebeius-0.1363.99e-091.13e-08
genusCoriobacteriaceae_noname0.1354.13e-091.17e-08
speciesCoriobacteriaceae_bacterium_phI0.1354.47e-091.26e-08
speciesPeptostreptococcus_anaerobius0.1354.56e-091.27e-08
classNegativicutes-0.1354.83e-091.33e-08
orderSelenomonadales-0.1354.83e-091.33e-08
speciesBifidobacterium_bifidum0.1338.5e-092.33e-08
speciesErysipelotrichaceae_bacterium_3_1_530.1321.01e-082.76e-08
speciesEubacterium_limosum0.1321.07e-082.9e-08
speciesVeillonella_parvula-0.1321.08e-082.91e-08
speciesLachnospiraceae_bacterium_3_1_46FAA0.1311.19e-083.19e-08
speciesOscillibacter_unclassified0.1311.26e-083.36e-08
familyOscillospiraceae0.1291.94e-085.12e-08
genusOscillibacter0.1291.94e-085.12e-08
speciesClostridium_ramosum0.1273.92e-081.03e-07
genusFlavonifractor0.1264.36e-081.13e-07
speciesFlavonifractor_plautii0.1264.36e-081.13e-07
phylumProteobacteria-0.1264.66e-081.2e-07
genusCatenibacterium-0.1255.51e-081.41e-07
speciesCatenibacterium_mitsuokai-0.1255.51e-081.41e-07
speciesAlistipes_sp_AP110.1256.38e-081.62e-07
speciesParabacteroides_unclassified-0.1248.07e-082.04e-07
speciesBacteroides_ovatus-0.1238.44e-082.12e-07
speciesClostridium_clostridioforme0.1211.46e-073.65e-07
speciesLactobacillus_ruminis-0.121.81e-074.5e-07
classEpsilonproteobacteria-0.122.15e-075.28e-07
orderCampylobacterales-0.122.15e-075.28e-07
speciesParaprevotella_xylaniphila-0.122.16e-075.28e-07
speciesHaemophilus_paraphrohaemolyticus-0.122.18e-075.3e-07
familyLactobacillaceae0.1182.91e-077.04e-07
speciesFusobacterium_ulcerans-0.1183.11e-077.49e-07
familyClostridiales_noname0.1165.3e-071.27e-06
speciesBacteroides_xylanisolvens-0.1165.47e-071.3e-06
speciesMegasphaera_unclassified-0.1147.61e-071.8e-06
speciesBifidobacterium_catenulatum0.1138.66e-072.04e-06
familyAcidaminococcaceae-0.1139.7e-072.28e-06
speciesBacteroides_stercoris-0.1139.91e-072.32e-06
genusAggregatibacter-0.1121.11e-062.58e-06
genusLactobacillus0.1121.3e-063.01e-06
genusPeptostreptococcus0.1111.39e-063.2e-06
genusPhascolarctobacterium-0.111.82e-064.15e-06
speciesPhascolarctobacterium_succinatutens-0.111.82e-064.15e-06
speciesClostridiales_bacterium_1_7_47FAA0.111.96e-064.45e-06
speciesBacteroides_thetaiotaomicron-0.1073.66e-068.27e-06
familyStaphylococcaceae0.1063.98e-068.95e-06
familyCampylobacteraceae-0.1064.57e-061.02e-05
speciesBacteroides_faecis-0.1064.61e-061.03e-05
speciesStreptococcus_mutans0.1064.71e-061.04e-05
orderAeromonadales-0.1054.89e-061.08e-05
genusParaprevotella-0.1055e-061.09e-05
speciesHoldemania_sp_AP20.1055.01e-061.09e-05
genusClostridiaceae_noname0.1055.17e-061.12e-05
speciesClostridiaceae_bacterium_JC1180.1055.17e-061.12e-05
speciesParaprevotella_unclassified-0.1055.86e-061.26e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.1046.07e-061.3e-05
speciesDorea_unclassified-0.1046.25e-061.33e-05
genusPeptoniphilus0.1046.27e-061.33e-05
speciesBifidobacterium_pseudocatenulatum0.1046.42e-061.36e-05
speciesAggregatibacter_segnis-0.1046.46e-061.36e-05
genusCampylobacter-0.1047.19e-061.51e-05
speciesMitsuokella_multacida-0.1037.41e-061.55e-05
speciesRuminococcus_lactaris0.1038.05e-061.67e-05
genusStaphylococcus0.1038.43e-061.75e-05
speciesStreptococcus_anginosus0.1029.71e-062e-05
genusErysipelotrichaceae_noname0.1011.15e-052.36e-05
speciesParabacteroides_merdae-0.1011.19e-052.43e-05
speciesDesulfovibrio_piger-0.1011.2e-052.44e-05
genusBilophila0.1011.29e-052.61e-05
speciesClostridium_sp_KLE_17550.1011.33e-052.67e-05
speciesBilophila_wadsworthia0.1011.33e-052.67e-05
speciesLachnospiraceae_bacterium_7_1_58FAA0.11.56e-053.12e-05
speciesBilophila_unclassified0.0991.67e-053.33e-05
speciesPorphyromonas_asaccharolytica0.0982.26e-054.48e-05
genusRothia0.0982.39e-054.72e-05
familyMicrococcaceae0.0972.56e-055.03e-05
speciesStreptococcus_vestibularis0.0972.58e-055.05e-05
speciesStreptococcus_gordonii0.0963.02e-055.89e-05
speciesClostridium_spiroforme0.0963.25e-056.31e-05
speciesKlebsiella_pneumoniae-0.0953.55e-056.87e-05
speciesBacteroides_dorei-0.0953.65e-057.01e-05
genusPseudoflavonifractor0.0953.67e-057.01e-05
speciesPseudoflavonifractor_capillosus0.0953.67e-057.01e-05
speciesLactobacillus_gasseri0.0944.32e-058.22e-05
genusRuminococcaceae_noname0.0926.83e-050.000129
speciesRuminococcaceae_bacterium_D160.0926.83e-050.000129
speciesParaprevotella_clara-0.0927.06e-050.000133
speciesTuricibacter_sanguinis0.0927.35e-050.000138
speciesClostridium_perfringens-0.099.24e-050.000172
genusPorphyromonas0.099.61e-050.000179
speciesBacteroides_coprocola-0.0890.0001220.000226
genusClostridiales_noname0.0870.0001670.000308
speciesRothia_mucilaginosa0.0860.000190.000349
speciesRuminococcus_callidus0.0860.0002070.000379
genusTuricibacter0.0850.0002390.000436
speciesGemella_morbillorum0.0840.0002790.000504
speciesLactobacillus_sanfranciscensis0.0840.0002790.000504
speciesTuricibacter_unclassified0.0840.000280.000504
genusSuccinatimonas-0.0830.0003090.000552
speciesSuccinatimonas_hippei-0.0830.0003090.000552
speciesRuminococcus_gnavus0.0830.0003110.000554
speciesBacteroides_coprophilus-0.0830.000320.000568
speciesLactobacillus_acidophilus0.0830.0003390.000599
familySuccinivibrionaceae-0.0820.000380.000669
speciesEubacterium_dolichum0.0820.0003950.000693
familyVeillonellaceae-0.080.0005150.0009
speciesLactobacillus_mucosae-0.0790.0006380.00111
speciesPorphyromonas_uenonis0.0790.0006610.00115
speciesFusobacterium_varium-0.0790.0006650.00115
genusButyricimonas-0.0770.0008040.00138
speciesButyricimonas_synergistica-0.0770.0008040.00138
speciesEnterococcus_faecalis0.0770.0008230.00141
speciesBacteroides_caccae-0.0770.0008790.0015
genusParasutterella-0.0760.001030.00174
speciesParasutterella_excrementihominis-0.0760.001030.00174
classDeltaproteobacteria0.0760.001080.00181
orderDesulfovibrionales0.0760.001080.00181
familyDesulfovibrionaceae0.0760.001080.00181
orderPseudomonadales0.0750.001150.00192
speciesMegamonas_unclassified-0.0730.00160.00266
speciesMegasphaera_elsdenii-0.0730.001630.0027
speciesPrevotella_bivia0.0720.001740.00287
genusMegamonas-0.0720.001790.00294
speciesCoprobacillus_sp_29_10.0720.001860.00305
speciesAlistipes_onderdonkii0.0710.002250.00367
speciesRoseburia_hominis0.070.00230.00374
speciesEubacterium_biforme-0.070.002350.00381
genusButyrivibrio-0.070.002360.00381
speciesHaemophilus_sputorum-0.070.002510.00404
speciesEscherichia_unclassified0.0690.002820.00453
speciesBifidobacterium_dentium0.0690.002990.00478
speciesCoprobacillus_sp_D60.0680.00320.0051
speciesFusobacterium_nucleatum-0.0680.003460.0055
speciesParabacteroides_distasonis-0.0670.003710.00588
speciesButyrivibrio_crossotus-0.0660.004150.00655
genusKlebsiella-0.0650.004940.00777
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0640.005280.00828
speciesBacteroides_massiliensis-0.0640.005990.00936
speciesLachnospiraceae_bacterium_6_1_63FAA0.0630.006350.00989
speciesBacteroides_salanitronis-0.0630.006640.0103
speciesEubacterium_siraeum0.0620.006880.0106
speciesParabacteroides_sp_D13-0.0620.006970.0108
speciesMegamonas_hypermegale-0.0620.007110.0109
speciesStreptococcus_mitis_oralis_pneumoniae0.0620.00750.0115
speciesLactococcus_phage_P6800.0610.007910.0121
familyBacteroidales_noname0.0610.008580.013
genusBacteroidales_noname0.0610.008580.013
speciesBacteroidales_bacterium_ph80.0610.008580.013
speciesMegamonas_rupellensis-0.060.010.0151
speciesKlebsiella_oxytoca0.0570.0130.0195
speciesLactococcus_garvieae0.0570.01330.0199
speciesAcidaminococcus_intestini-0.0570.01360.0203
speciesAlistipes_shahii-0.0570.01420.0211
speciesAnaerostipes_unclassified0.0550.01650.0245
genusMitsuokella-0.0550.01820.0269
speciesMethanobrevibacter_unclassified0.0540.02040.0301
speciesRoseburia_inulinivorans-0.0530.02070.0304
speciesOdoribacter_laneus0.0530.02270.0333
speciesMegamonas_funiformis-0.0520.02340.0342
speciesMitsuokella_unclassified-0.0520.02440.0355
speciesEubacterium_cylindroides0.0520.02470.0359
speciesAcidaminococcus_fermentans-0.0520.02540.0368
genusDesulfovibrio-0.0510.02880.0414
speciesBacteroides_fragilis-0.0510.02880.0414
genusPantoea-0.050.03060.0435
genusOxalobacter-0.050.03060.0435
speciesPantoea_unclassified-0.050.03060.0435
speciesOxalobacter_formigenes-0.050.03060.0435
speciesEubacterium_eligens-0.050.03120.0442
speciesLactobacillus_salivarius-0.050.03160.0447
genusSiphoviridae_noname0.0490.03430.0483
familyOxalobacteraceae-0.0480.0370.052
speciesOscillibacter_sp_KLE_1728-0.0480.03980.0557
speciesPeptostreptococcaceae_noname_unclassified0.0470.04110.0574
classGammaproteobacteria-0.0470.04160.0579
speciesAlistipes_senegalensis-0.0470.04190.0582
genusFaecalibacterium0.0470.04290.0592
speciesFaecalibacterium_prausnitzii0.0470.04290.0592
speciesEnterobacter_aerogenes-0.0470.0440.0605
speciesBifidobacterium_angulatum-0.0460.04440.0609
familyMyoviridae-0.0460.04530.062
speciesPeptostreptococcus_stomatis0.0460.04690.064
classMethanobacteria0.0450.04980.0674
orderMethanobacteriales0.0450.04980.0674
familyMethanobacteriaceae0.0450.04980.0674
genusOlsenella0.0450.05280.0712
genusMethanobrevibacter0.0440.05920.0796
speciesOscillibacter_sp_KLE_17450.0440.05990.0803
speciesStreptococcus_phage_Sfi210.0430.0610.0816
phylumViruses_noname0.0430.0660.0878
classViruses_noname0.0430.0660.0878
speciesLactococcus_phage_bIL670.0420.06940.092
speciesLeuconostoc_lactis0.0420.07050.0932
phylumEuryarchaeota0.0410.07360.097
speciesWeissella_cibaria0.0410.07410.0974
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0410.07580.0994
speciesMethanobrevibacter_smithii0.040.08090.106
speciesLactococcus_phage_936_sensu_lato-0.040.08180.107
speciesAlistipes_sp_HGB5-0.0390.09510.124
genusCoprobacter-0.0380.09690.125
speciesCoprobacter_fastidiosus-0.0380.09690.125
genusProteus-0.0380.1010.13
familySiphoviridae0.0380.1040.134
speciesOlsenella_unclassified0.0370.1060.136
genusEscherichia0.0370.1130.145
speciesRuminococcus_champanellensis-0.0360.1230.157
speciesAnaerotruncus_unclassified0.0350.1250.159
speciesCoprococcus_eutactus-0.0350.1310.166
genusTunalikevirus-0.0350.1340.17
genusAcidaminococcaceae_unclassified-0.0340.1370.173
genusMethanosphaera0.0340.1440.181
speciesMethanosphaera_stadtmanae0.0340.1440.181
speciesSutterella_parvirubra-0.0340.1470.184
speciesEscherichia_coli0.0340.1470.184
genusWeissella0.0330.1540.192
genusBarnesiella0.0310.1810.224
speciesBarnesiella_intestinihominis0.0310.1810.224
speciesBacteroides_fluxus0.0310.1830.226
genusAcidaminococcus-0.0310.1860.229
genusEnterobacter-0.030.190.234
genusButyricicoccus0.030.1930.236
speciesButyricicoccus_pullicaecorum0.030.1930.236
speciesBacteroides_intestinalis-0.0290.2110.257
orderViruses_noname0.0290.2130.259
speciesBacteroides_nordii-0.0290.2140.26
speciesEnterobacter_cloacae-0.0280.220.266
speciesRoseburia_intestinalis0.0280.230.278
speciesBacteroides_barnesiae-0.0280.2310.278
familyBurkholderiales_noname-0.0270.2350.282
orderEnterobacteriales0.0270.2370.283
familyEnterobacteriaceae0.0270.2370.283
genusLambdalikevirus0.0260.2530.302
speciesBacteroides_finegoldii-0.0260.2590.308
speciesKlebsiella_phage_KP36-0.0260.2630.312
speciesClostridium_nexile-0.0260.270.319
genusMyoviridae_noname-0.0250.2720.321
speciesLactobacillus_fermentum0.0250.2730.321
speciesBacteroides_eggerthii-0.0250.2740.322
genusBurkholderiales_noname-0.0250.2790.326
speciesBurkholderiales_bacterium_1_1_47-0.0250.2790.326
speciesLactococcus_phage_phi7-0.0250.2840.331
speciesBacteroides_uniformis-0.0240.30.349
speciesStreptococcus_pasteurianus-0.0240.3040.353
genusRoseburia-0.0240.3050.353
speciesProteus_mirabilis-0.0240.3080.355
speciesCollinsella_intestinalis0.0240.3080.355
speciesBacteroides_sp_1_1_6-0.0230.3160.363
genusPyramidobacter0.0230.320.366
speciesPyramidobacter_piscolens0.0230.320.366
orderCaudovirales0.0230.3280.374
speciesAlistipes_indistinctus0.0220.3460.394
speciesAlistipes_unclassified0.0210.3540.402
genusMorganella-0.0210.3570.403
speciesMorganella_morganii-0.0210.3570.403
speciesLactobacillus_vaginalis0.0210.3690.416
speciesDialister_succinatiphilus-0.0210.370.416
speciesParabacteroides_sp_20_30.020.3760.422
genusC2likevirus0.020.3880.433
speciesLactococcus_phage_jm20.020.3890.433
speciesDesulfovibrio_desulfuricans-0.020.3890.433
speciesKlebsiella_unclassified0.0190.4050.45
speciesBacteroides_oleiciplenus-0.0190.4120.456
speciesLactobacillus_oris0.0190.4190.463
speciesLactobacillus_crispatus-0.0180.4250.469
speciesParabacteroides_goldsteinii-0.0180.4370.481
speciesBacteroides_sp_3_1_19-0.0170.4560.501
speciesC2likevirus_unclassified0.0170.4590.503
speciesAlistipes_putredinis-0.0160.4880.533
speciesLactobacillus_amylovorus0.0160.4890.533
speciesBacteroides_pectinophilus-0.0160.5010.545
speciesBacteroides_sp_2_1_22-0.0160.5020.545
speciesWeissella_confusa0.0150.5140.556
familyViruses_noname-0.0140.5420.584
genusViruses_noname-0.0140.5420.584
phylumSynergistetes0.0140.5490.586
classSynergistia0.0140.5490.586
orderSynergistales0.0140.5490.586
familySynergistaceae0.0140.5490.586
speciesSlackia_piriformis-0.0140.5580.595
speciesClostridium_sp_ATCC_BAA_4420.0130.5670.603
speciesLactobacillus_reuteri0.0130.5760.611
speciesCollinsella_unclassified-0.0130.5790.613
speciesAlistipes_finegoldii-0.0120.6110.645
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0110.6210.654
genusCitrobacter0.0110.6250.657
speciesAcidaminococcus_unclassified0.0110.6330.664
speciesBacteroides_cellulosilyticus0.010.650.68
speciesEnterobacteria_phage_HK5440.010.6740.704
speciesBifidobacterium_breve0.010.6770.705
speciesBacteroides_clarus-0.0090.6940.722
familyRikenellaceae0.0080.7140.739
genusAlistipes0.0080.7140.739
speciesCitrobacter_unclassified0.0080.7230.746
speciesButyrivibrio_unclassified-0.0080.7240.746
speciesParabacteroides_johnsonii-0.0080.7430.764
speciesClostridium_sp_L2_500.0060.7910.812
speciesCitrobacter_freundii0.0060.8040.823
speciesStreptococcus_lutetiensis0.0030.8840.903
familyPodoviridae-0.0030.8950.91
speciesBacteroides_salyersiae0.0030.8950.91
speciesBacteroides_sp_4_3_47FAA-0.0020.9190.931
speciesStreptococcus_infantarius0.0020.920.931
speciesKlebsiella_sp_MS_92_3-0.0020.9210.931
genusSlackia-0.0020.9390.947
speciesRoseburia_unclassified-0.0010.9560.962
speciesCollinsella_tanakaei-0.0010.9610.965
speciesOdoribacter_unclassified-0.0010.9670.969
speciesCoprococcus_sp_ART55_10.00.9870.987
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0006398420844390.001243572242017.68111469566e-06345411.6027
Type II diabetesChina1831850.002468344442060.001500193343250.0503792290271701723.1898
Crohns diseaseSpain17660.002122113683770.00496645572470.09604104277621365445.3998
Rheumatoid arthritisChina127980.006008405557790.005017243569210.12976405769657221.9162
ObesityDenmark1691230.001210726055420.001174954829080.2881963763381381845.4375
Ulcerative colitisSpain78660.003492037772850.00496645572470.4914825934941890262.354
Type II diabetesDenmark752770.001483466311520.001200601756230.5253411782832108569.1153
Colorectal cancerAustria64350.0224962213460.02695358636790.5855580926592020768.3685
Type II diabetesSweden53920.005924147682690.006586047284070.8836898948692643889.5293
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382