MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-17 02:55:29 PST
Job id & description: 1564, test rdhA
Query type: protein
Count queries & homologs: 1, 3
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|K4L6W3|K4L6W3_9FIRM1403273CompleteunknownNOG145923unknownunknown80.085.7144.69
tr|K4L6W3|K4L6W3_9FIRM1383230Lack 5'-endunknownNOG145923unknownunknown78.6883.4941.11
tr|K4L6W3|K4L6W3_9FIRM1638568CompleteunknownNOG145923unknownunknown80.6691.032.82
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusFlavonifractor0.6951.86e-2694.39e-267
speciesFlavonifractor_plautii0.6951.86e-2694.39e-267
speciesClostridium_bolteae0.5686.1e-1609.6e-158
familyClostridiales_noname0.5639e-1571.06e-154
speciesClostridium_symbiosum0.4859.02e-1118.51e-109
speciesClostridium_citroniae0.4719.33e-1047.34e-102
speciesClostridium_hathewayi0.4613.19e-992.15e-97
speciesClostridiales_bacterium_1_7_47FAA0.4486.43e-933.79e-91
familyBacteroidaceae0.4241.74e-828.21e-81
genusBacteroides0.4241.74e-828.21e-81
speciesRuminococcus_gnavus0.4212.04e-818.75e-80
speciesClostridium_asparagiforme0.3884.62e-681.82e-66
speciesAnaerotruncus_colihominis0.3691.82e-616.61e-60
speciesClostridium_clostridioforme0.3692.9e-619.78e-60
familyClostridiaceae0.3632.33e-597.33e-58
speciesCoprococcus_catus-0.3624.34e-591.28e-57
genusCoprococcus-0.3581.32e-573.66e-56
genusClostridium0.3542.44e-566.4e-55
familyOscillospiraceae0.3391.84e-514.34e-50
genusOscillibacter0.3391.84e-514.34e-50
speciesEggerthella_unclassified0.3347.56e-501.7e-48
genusClostridiales_noname0.3331.28e-492.75e-48
genusEggerthella0.3283.1e-486.31e-47
genusCoprobacillus0.3283.21e-486.31e-47
speciesCoprobacillus_unclassified0.3145.39e-441.02e-42
speciesAnaerostipes_unclassified0.3122.31e-434.19e-42
speciesOscillibacter_unclassified0.3091.01e-421.77e-41
speciesClostridium_nexile0.3061.02e-411.72e-40
familyRuminococcaceae-0.32.57e-404.18e-39
speciesMethanobrevibacter_smithii-0.2892.1e-373.3e-36
speciesDorea_longicatena-0.2871.03e-361.57e-35
phylumBacteroidetes0.2861.74e-362.42e-35
classBacteroidia0.2861.74e-362.42e-35
orderBacteroidales0.2861.74e-362.42e-35
genusHoldemania0.2836.99e-369.43e-35
classMethanobacteria-0.2831.09e-351.35e-34
orderMethanobacteriales-0.2831.09e-351.35e-34
familyMethanobacteriaceae-0.2831.09e-351.35e-34
genusMethanobrevibacter-0.2821.61e-351.95e-34
phylumEuryarchaeota-0.2821.71e-352.02e-34
phylumFirmicutes-0.2799.58e-351.1e-33
speciesLachnospiraceae_bacterium_1_4_56FAA0.2772.52e-342.83e-33
speciesClostridium_ramosum0.2741.5e-331.65e-32
genusParabacteroides0.2732.79e-332.99e-32
speciesCoprococcus_sp_ART55_1-0.2692.88e-323.02e-31
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2676.57e-326.74e-31
orderClostridiales-0.2678.56e-328.43e-31
classClostridia-0.2678.57e-328.43e-31
speciesEubacterium_siraeum-0.2661.52e-311.46e-30
speciesLachnospiraceae_bacterium_5_1_57FAA0.2611.81e-301.71e-29
speciesBacteroides_fragilis0.262.58e-302.39e-29
genusBilophila0.2571.13e-291.03e-28
speciesCoprococcus_comes-0.2553.35e-292.98e-28
speciesBifidobacterium_adolescentis-0.2553.81e-293.33e-28
speciesBilophila_unclassified0.2546.97e-295.98e-28
speciesBlautia_producta0.2531.19e-281e-27
speciesSubdoligranulum_unclassified-0.2481.26e-271.04e-26
genusClostridiaceae_noname0.2481.53e-271.22e-26
speciesClostridiaceae_bacterium_JC1180.2481.53e-271.22e-26
familyFusobacteriaceae0.2472.38e-271.87e-26
phylumFusobacteria0.2463.79e-272.84e-26
classFusobacteriia0.2463.79e-272.84e-26
orderFusobacteriales0.2463.79e-272.84e-26
classDeltaproteobacteria0.2455.87e-274.2e-26
orderDesulfovibrionales0.2455.87e-274.2e-26
familyDesulfovibrionaceae0.2455.87e-274.2e-26
speciesBacteroides_thetaiotaomicron0.2441.09e-267.68e-26
genusFusobacterium0.2431.35e-269.37e-26
speciesCollinsella_aerofaciens-0.2431.63e-261.12e-25
genusButyrivibrio-0.2421.99e-261.34e-25
speciesLachnospiraceae_bacterium_2_1_58FAA0.2422.89e-261.92e-25
speciesBilophila_wadsworthia0.2413.51e-262.3e-25
speciesLachnospiraceae_bacterium_6_1_63FAA0.246.99e-264.52e-25
speciesClostridium_sp_ATCC_BAA_4420.2399.72e-266.2e-25
speciesEubacterium_ramulus-0.2381.93e-251.21e-24
genusSubdoligranulum-0.2341.18e-247.33e-24
genusDorea-0.2323.25e-241.99e-23
speciesEubacterium_rectale-0.2314.78e-242.89e-23
speciesEubacterium_biforme-0.236.32e-243.78e-23
speciesBacteroides_ovatus0.2291.05e-236.2e-23
speciesEubacterium_dolichum0.2241.33e-227.75e-22
speciesCoprococcus_eutactus-0.2222.58e-221.49e-21
speciesErysipelotrichaceae_bacterium_2_2_44A0.225.18e-222.95e-21
speciesRuminococcus_obeum-0.2163.01e-211.69e-20
familyEubacteriaceae-0.2089.01e-205e-19
genusEubacterium-0.2089.78e-205.37e-19
speciesEggerthella_lenta0.2081.12e-196.08e-19
speciesButyrivibrio_crossotus-0.2037.85e-194.21e-18
speciesFusobacterium_ulcerans0.2038.44e-194.48e-18
speciesLachnospiraceae_bacterium_7_1_58FAA0.1986.43e-183.37e-17
speciesEscherichia_coli0.1979.81e-185.09e-17
familyPorphyromonadaceae0.1961.37e-177.03e-17
speciesBacteroides_stercoris0.1951.58e-178.02e-17
genusCollinsella-0.1942.46e-171.24e-16
speciesEubacterium_sp_3_1_310.1882.04e-161.01e-15
phylumProteobacteria0.1882.26e-161.11e-15
speciesAlistipes_senegalensis-0.1865.99e-162.91e-15
genusEscherichia0.1858.69e-164.19e-15
speciesBacteroides_xylanisolvens0.1849.39e-164.48e-15
speciesRoseburia_hominis-0.1812.86e-151.35e-14
genusMitsuokella-0.1788.7e-154.07e-14
speciesMitsuokella_unclassified-0.1789.04e-154.18e-14
speciesSubdoligranulum_sp_4_3_54A2FAA0.1789.26e-154.24e-14
genusFaecalibacterium-0.1781.02e-144.59e-14
speciesFaecalibacterium_prausnitzii-0.1781.02e-144.59e-14
speciesHoldemania_filiformis0.1761.66e-147.39e-14
speciesFusobacterium_varium0.1752.3e-141.01e-13
speciesOlsenella_unclassified-0.1735.82e-142.54e-13
speciesOscillibacter_sp_KLE_17450.1711.02e-134.42e-13
familyBacteroidales_noname-0.171.49e-136.28e-13
genusBacteroidales_noname-0.171.49e-136.28e-13
speciesBacteroidales_bacterium_ph8-0.171.49e-136.28e-13
speciesMethanobrevibacter_unclassified-0.1682.66e-131.11e-12
speciesAnaerotruncus_unclassified-0.1682.92e-131.21e-12
orderEnterobacteriales0.1664.73e-131.92e-12
familyEnterobacteriaceae0.1664.73e-131.92e-12
genusOlsenella-0.1664.96e-132e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1621.98e-127.92e-12
speciesDorea_formicigenerans-0.1612.57e-121.02e-11
speciesErysipelotrichaceae_bacterium_6_1_450.163.57e-121.4e-11
speciesBacteroides_pectinophilus-0.1585.83e-122.27e-11
speciesLactobacillus_ruminis-0.1579.67e-123.74e-11
genusRuminococcus-0.1551.49e-115.72e-11
speciesAnaerostipes_hadrus-0.1542.09e-117.96e-11
speciesBacteroides_vulgatus0.1532.78e-111.05e-10
speciesRuminococcus_callidus-0.1532.93e-111.1e-10
speciesClostridium_sp_L2_50-0.1524.11e-111.53e-10
speciesPeptostreptococcaceae_noname_unclassified-0.1524.32e-111.59e-10
familyLachnospiraceae-0.157.22e-112.64e-10
speciesParabacteroides_distasonis0.1481.23e-104.47e-10
speciesErysipelotrichaceae_bacterium_3_1_530.1462.02e-107.28e-10
speciesLachnospiraceae_bacterium_2_1_46FAA0.1462.43e-108.69e-10
speciesHoldemania_sp_AP20.1462.56e-109.09e-10
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1419.69e-103.41e-09
speciesFusobacterium_mortiferum0.141.21e-094.23e-09
phylumVerrucomicrobia-0.1391.76e-095.89e-09
classVerrucomicrobiae-0.1391.76e-095.89e-09
orderVerrucomicrobiales-0.1391.76e-095.89e-09
familyVerrucomicrobiaceae-0.1391.76e-095.89e-09
genusAkkermansia-0.1391.76e-095.89e-09
speciesAkkermansia_muciniphila-0.1391.76e-095.89e-09
speciesKlebsiella_pneumoniae0.1382.12e-097.05e-09
speciesTuricibacter_sanguinis-0.1382.24e-097.39e-09
speciesBlautia_hydrogenotrophica0.1363.87e-091.27e-08
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1345.72e-091.86e-08
genusBarnesiella-0.1329.62e-093.09e-08
speciesBarnesiella_intestinihominis-0.1329.62e-093.09e-08
speciesEubacterium_eligens-0.1311.43e-084.56e-08
speciesRuminococcus_bromii-0.131.9e-086.02e-08
speciesParabacteroides_unclassified0.1292.07e-086.5e-08
genusBlautia0.1292.08e-086.5e-08
speciesEubacterium_hallii-0.1292.1e-086.52e-08
classGammaproteobacteria0.1283.04e-089.38e-08
genusCatenibacterium-0.1273.24e-089.83e-08
speciesCatenibacterium_mitsuokai-0.1273.24e-089.83e-08
genusTuricibacter-0.1273.25e-089.83e-08
speciesRuminococcus_lactaris-0.1273.44e-081.03e-07
orderActinomycetales-0.1255.78e-081.73e-07
genusKlebsiella0.1247.89e-082.34e-07
genusAdlercreutzia-0.1239.03e-082.65e-07
speciesAdlercreutzia_equolifaciens-0.1239.03e-082.65e-07
speciesClostridium_sp_KLE_17550.1239.93e-082.89e-07
speciesPrevotella_bivia0.1231e-072.9e-07
speciesRuminococcus_champanellensis-0.1221.29e-073.71e-07
genusButyricicoccus0.1211.38e-073.92e-07
speciesButyricicoccus_pullicaecorum0.1211.38e-073.92e-07
genusMethanosphaera-0.1211.41e-073.96e-07
speciesMethanosphaera_stadtmanae-0.1211.41e-073.96e-07
speciesCollinsella_intestinalis0.1211.49e-074.16e-07
speciesBifidobacterium_catenulatum-0.121.94e-075.39e-07
speciesBacteroides_nordii0.1192.73e-077.54e-07
speciesBacteroides_uniformis0.1182.87e-077.88e-07
speciesTuricibacter_unclassified-0.1146.96e-071.9e-06
speciesLactobacillus_rhamnosus-0.1121.1e-062.98e-06
speciesBifidobacterium_pseudocatenulatum0.1121.13e-063.05e-06
familyMicrococcaceae-0.1121.17e-063.14e-06
genusMegamonas0.1121.22e-063.25e-06
speciesMegamonas_unclassified0.1121.23e-063.26e-06
genusRothia-0.1121.29e-063.4e-06
speciesEubacterium_limosum0.1121.31e-063.44e-06
speciesBacteroides_salyersiae0.111.73e-064.51e-06
speciesStreptococcus_parasanguinis-0.111.81e-064.69e-06
genusPhascolarctobacterium-0.112.06e-065.28e-06
speciesPhascolarctobacterium_succinatutens-0.112.06e-065.28e-06
speciesRothia_mucilaginosa-0.1082.9e-067.4e-06
genusPropionibacterium-0.1083.11e-067.89e-06
speciesCollinsella_tanakaei0.1073.41e-068.61e-06
genusBifidobacterium-0.1064.34e-061.09e-05
orderBifidobacteriales-0.1064.74e-061.18e-05
familyBifidobacteriaceae-0.1064.74e-061.18e-05
speciesEubacterium_ventriosum-0.1055.68e-061.4e-05
speciesBacteroides_oleiciplenus0.1047.29e-061.79e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1038.63e-062.11e-05
speciesBacteroides_caccae0.1029.24e-062.25e-05
speciesParabacteroides_johnsonii0.1011.17e-052.83e-05
speciesParaprevotella_clara-0.0982.14e-055.15e-05
speciesRuminococcus_sp_5_1_39BFAA-0.0972.73e-056.54e-05
phylumActinobacteria-0.0963.09e-057.33e-05
classActinobacteria-0.0963.09e-057.33e-05
speciesPropionibacterium_freudenreichii-0.0963.14e-057.41e-05
speciesMegamonas_rupellensis0.0953.78e-058.88e-05
genusOxalobacter-0.0953.94e-059.12e-05
speciesButyrivibrio_unclassified-0.0953.94e-059.12e-05
speciesOxalobacter_formigenes-0.0953.94e-059.12e-05
classBetaproteobacteria0.0945.12e-050.000118
speciesParaprevotella_unclassified-0.0935.4e-050.000124
genusParaprevotella-0.0935.6e-050.000127
speciesRuminococcus_sp_JC304-0.0935.61e-050.000127
classBacilli-0.0935.87e-050.000133
speciesMegasphaera_micronuciformis0.0936.12e-050.000138
familyOxalobacteraceae-0.0926.48e-050.000145
orderLactobacillales-0.0926.73e-050.00015
speciesLachnospiraceae_bacterium_1_1_57FAA0.0918.53e-050.000189
speciesMitsuokella_multacida-0.099.65e-050.000213
speciesCoriobacteriaceae_bacterium_phI0.0890.000110.000241
genusPeptoniphilus0.0890.0001190.00026
orderBurkholderiales0.0890.0001220.000265
speciesCollinsella_unclassified0.0890.0001240.000268
familyLactobacillaceae-0.0890.0001260.000272
speciesBifidobacterium_angulatum-0.0880.0001350.00029
genusLactobacillus-0.0880.0001380.000295
speciesBacteroides_clarus0.0870.0001730.000368
genusCoriobacteriaceae_noname0.0860.0002120.000447
genusPeptostreptococcaceae_noname-0.0860.0002120.000447
orderPasteurellales-0.0850.0002410.000503
familyPasteurellaceae-0.0850.0002410.000503
genusHaemophilus-0.0850.0002420.000503
speciesStreptococcus_thermophilus-0.0850.0002450.000507
speciesEscherichia_unclassified0.0840.0002570.00053
speciesHaemophilus_parainfluenzae-0.0840.0002690.000552
speciesAlistipes_shahii-0.0840.0002950.000603
genusAcidaminococcus0.0830.0003420.000696
speciesRuminococcus_torques0.0820.0003920.000794
speciesDialister_succinatiphilus-0.0820.0003950.000797
genusMegasphaera0.0810.0004720.000948
genusPantoea0.080.0005210.00104
speciesPantoea_unclassified0.080.0005210.00104
speciesStreptococcus_pasteurianus0.080.000530.00105
speciesStreptococcus_vestibularis-0.080.0005570.0011
orderCoriobacteriales-0.0790.0006520.00128
familyCoriobacteriaceae-0.0790.0006520.00128
speciesCoprobacillus_sp_29_10.0780.000750.00146
genusActinomyces-0.0770.0008590.00167
speciesBacteroides_dorei0.0760.0009820.0019
familyPeptostreptococcaceae-0.0760.001030.00198
phylumViruses_noname-0.0760.001050.00201
classViruses_noname-0.0760.001050.00201
speciesHoldemania_unclassified0.0760.001070.00204
genusMorganella0.0760.001080.00204
speciesMorganella_morganii0.0760.001080.00204
speciesKlebsiella_unclassified0.0750.001160.00218
familyActinomycetaceae-0.0750.001240.00232
genusLachnospiraceae_noname0.0750.001250.00233
speciesBacteroides_massiliensis0.0740.00140.0026
familyPropionibacteriaceae-0.0740.001440.00267
speciesLactococcus_lactis-0.0740.001450.00267
speciesBacteroides_coprocola0.0730.00150.00275
speciesBifidobacterium_longum-0.0720.001790.00327
speciesBifidobacterium_animalis-0.0720.001920.0035
familySutterellaceae0.0710.001990.0036
genusLactococcus-0.0710.001990.0036
speciesMegamonas_hypermegale0.0710.002090.00377
speciesLactobacillus_casei_paracasei-0.070.002530.00454
speciesOscillibacter_sp_KLE_17280.070.002540.00454
genusCoprobacter-0.0680.003120.00554
speciesCoprobacter_fastidiosus-0.0680.003120.00554
speciesStreptococcus_salivarius-0.0680.003150.00557
speciesPrevotella_buccae0.0680.003250.00572
familyBurkholderiales_noname0.0680.003290.00577
familySiphoviridae-0.0680.00330.00577
speciesSutterella_wadsworthensis-0.0670.003850.00671
genusBurkholderiales_noname0.0660.004320.00747
speciesBurkholderiales_bacterium_1_1_470.0660.004320.00747
speciesBacteroides_finegoldii0.0650.004770.00822
genusRuminococcaceae_noname0.0650.004960.00848
speciesRuminococcaceae_bacterium_D160.0650.004960.00848
familyStreptococcaceae-0.0640.005690.0097
speciesAcidaminococcus_intestini0.0640.005770.0098
genusCampylobacter0.0640.005790.0098
speciesParaprevotella_xylaniphila-0.0630.006040.0102
speciesErysipelotrichaceae_bacterium_21_30.0630.006110.0103
speciesDorea_unclassified0.0630.006190.0104
speciesFusobacterium_nucleatum0.0630.006350.0106
familyPrevotellaceae-0.0630.006740.0112
familyCampylobacteraceae0.0620.007580.0126
orderPseudomonadales-0.0610.008340.0138
speciesBacteroides_sp_3_1_190.0610.008390.0138
speciesLactococcus_phage_P680-0.060.008940.0147
genusStreptococcus-0.060.00920.015
speciesLactobacillus_salivarius0.0590.01020.0166
speciesRoseburia_unclassified-0.0590.01090.0177
familyRikenellaceae0.0590.01130.0182
genusAlistipes0.0590.01130.0182
speciesAlistipes_finegoldii-0.0570.01340.0215
speciesC2likevirus_unclassified-0.0560.01510.0242
speciesPorphyromonas_uenonis0.0560.01520.0242
speciesParabacteroides_goldsteinii0.0560.01540.0245
speciesAcidaminococcus_unclassified0.0560.01620.0257
genusC2likevirus-0.0550.01730.0273
speciesLactococcus_phage_phi7-0.0550.01760.0277
speciesRoseburia_intestinalis-0.0540.01860.0292
speciesSutterella_parvirubra0.0540.01970.0308
genusSutterella-0.0540.02030.0316
speciesLactobacillus_gasseri-0.0540.02050.0318
speciesDesulfovibrio_piger-0.0530.02090.0323
speciesCitrobacter_freundii0.0530.02120.0327
speciesBifidobacterium_bifidum-0.0530.02280.0351
speciesLactobacillus_crispatus0.0520.02380.0365
familyPodoviridae0.0520.02420.037
speciesAlistipes_sp_HGB5-0.0520.02510.0382
orderCaudovirales-0.0510.02660.0404
speciesBacteroides_plebeius0.0510.02710.041
speciesStreptococcus_infantarius0.0510.02870.0433
familyViruses_noname-0.050.03110.0466
genusViruses_noname-0.050.03110.0466
genusSiphoviridae_noname-0.050.03150.0471
genusCitrobacter0.0490.03280.0488
speciesDesulfovibrio_desulfuricans0.0490.03320.0493
speciesPeptostreptococcus_anaerobius0.0480.03810.0563
speciesStreptococcus_lutetiensis0.0480.03820.0563
speciesCoprobacillus_sp_D60.0480.03940.0579
speciesMegasphaera_unclassified0.0470.04060.0593
genusParasutterella0.0470.04070.0593
speciesParasutterella_excrementihominis0.0470.04070.0593
speciesBacteroides_salanitronis-0.0460.04460.0648
classEpsilonproteobacteria0.0460.04830.0697
orderCampylobacterales0.0460.04830.0697
speciesBifidobacterium_breve0.0450.05020.0722
speciesProteus_mirabilis0.0450.05130.0736
speciesBacteroides_sp_2_1_220.0440.05720.0818
genusGordonibacter0.0440.05830.0829
speciesGordonibacter_pamelaeae0.0440.05830.0829
orderViruses_noname-0.0430.06140.087
speciesStreptococcus_sanguinis-0.0430.06190.0875
speciesPorphyromonas_asaccharolytica0.0430.06280.0885
speciesStreptococcus_phage_Sfi210.0430.06390.0898
genusLambdalikevirus0.0420.06910.0968
speciesMegamonas_funiformis0.0420.06950.0971
speciesParabacteroides_sp_D13-0.0410.07390.103
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0410.07470.104
speciesBacteroides_faecis0.0410.07870.109
genusErysipelotrichaceae_noname-0.0410.07930.109
speciesAcidaminococcus_fermentans0.040.080.11
speciesCitrobacter_unclassified0.040.08370.115
speciesBacteroides_coprophilus-0.040.08590.118
genusPorphyromonas0.0390.08860.121
genusProteus0.0390.09520.129
speciesParabacteroides_merdae0.0380.09710.132
speciesStreptococcus_gordonii-0.0380.09920.134
genusDialister-0.0380.1020.138
genusPyramidobacter0.0370.1090.146
speciesPyramidobacter_piscolens0.0370.1090.146
speciesBacteroides_eggerthii0.0370.1090.146
speciesAlistipes_sp_AP110.0360.1160.155
speciesLactobacillus_acidophilus-0.0360.1170.156
phylumSynergistetes0.0360.120.158
classSynergistia0.0360.120.158
orderSynergistales0.0360.120.158
familySynergistaceae0.0360.120.158
speciesVeillonella_dispar0.0350.1340.176
speciesEubacterium_cylindroides-0.0340.1370.179
genusSutterellaceae_unclassified0.0340.1410.184
speciesStreptococcus_anginosus-0.0340.1420.185
genusPeptostreptococcus0.0340.1440.187
speciesEnterococcus_faecium-0.0340.1450.187
speciesVeillonella_unclassified-0.0340.1450.187
speciesWeissella_cibaria-0.0330.1490.192
speciesStreptococcus_australis-0.0330.1550.199
familyClostridiales_Family_XI_Incertae_Sedis0.0330.1590.203
genusAnaerotruncus0.0330.1590.203
speciesCampylobacter_concisus0.0320.1610.205
speciesKlebsiella_oxytoca-0.0320.1620.206
speciesBifidobacterium_dentium-0.0320.1640.208
speciesClostridium_leptum-0.0310.1770.223
genusAcidaminococcaceae_unclassified0.030.1910.24
familyVeillonellaceae0.030.1930.242
speciesEnterobacter_aerogenes0.030.20.25
genusActinobacillus-0.030.2020.252
speciesActinobacillus_unclassified-0.030.2020.252
genusOdoribacter-0.0290.2040.253
speciesKlebsiella_sp_MS_92_30.0290.2050.254
genusAnaerostipes-0.0290.2120.262
speciesLactobacillus_amylovorus0.0290.2160.266
speciesRoseburia_inulinivorans-0.0280.220.27
speciesBacteroides_intestinalis0.0280.2310.283
speciesBacteroides_sp_4_3_47FAA0.0270.2390.292
speciesPrevotella_copri-0.0270.2480.302
speciesLactococcus_phage_936_sensu_lato-0.0260.2540.309
orderBacillales-0.0260.2570.312
genusButyricimonas0.0250.2840.343
speciesButyricimonas_synergistica0.0250.2840.343
speciesOdoribacter_splanchnicus-0.0250.2850.343
speciesEggerthella_sp_1_3_56FAA-0.0250.2890.346
speciesLactobacillus_delbrueckii-0.0250.2890.346
familyBacillales_noname-0.0230.3270.39
genusGemella-0.0230.3270.39
speciesStreptococcus_mutans-0.0220.3460.411
genusLeuconostoc-0.0220.3510.416
speciesBacteroides_fluxus-0.0210.3570.422
genusEnterococcus-0.0210.3590.423
speciesAlistipes_putredinis-0.0210.3590.423
speciesPrevotella_stercorea0.0210.3710.436
speciesEnterobacteria_phage_HK5440.020.3790.444
speciesOdoribacter_unclassified-0.020.3870.452
familyEnterococcaceae-0.020.3890.453
speciesStreptococcus_mitis_oralis_pneumoniae-0.020.390.453
speciesAlistipes_indistinctus-0.0190.4050.47
speciesAggregatibacter_segnis0.0180.4280.495
speciesClostridium_spiroforme0.0180.4480.517
speciesLeuconostoc_lactis0.0170.4610.531
speciesHaemophilus_sputorum-0.0170.4680.537
familyAcidaminococcaceae-0.0170.4710.538
speciesEnterococcus_faecalis-0.0170.4710.538
speciesSlackia_piriformis0.0170.4740.54
speciesGemella_morbillorum0.0160.4770.543
speciesAlistipes_onderdonkii0.0160.4810.546
speciesLactobacillus_fermentum-0.0160.4910.556
genusRoseburia-0.0160.4990.563
genusDesulfovibrio0.0150.5090.573
speciesLactococcus_phage_jm2-0.0150.5120.575
speciesParabacteroides_sp_20_30.0150.5140.576
speciesWeissella_confusa0.0150.5160.577
speciesPeptostreptococcus_stomatis0.0140.5390.601
classErysipelotrichia0.0140.5560.614
orderErysipelotrichales0.0140.5560.614
familyErysipelotrichaceae0.0140.5560.614
genusVeillonella-0.0140.5560.614
speciesLactobacillus_reuteri-0.0140.5570.614
genusMyoviridae_noname-0.0130.5680.622
speciesOdoribacter_laneus0.0130.5680.622
classNegativicutes0.0130.5690.622
orderSelenomonadales0.0130.5690.622
genusEnterobacter0.0130.5710.622
speciesBacteroides_cellulosilyticus0.0130.5760.626
speciesLactococcus_phage_bIL670.0130.5840.634
genusPseudoflavonifractor-0.0120.5990.645
speciesPseudoflavonifractor_capillosus-0.0120.5990.645
speciesLactobacillus_plantarum-0.0120.5990.645
speciesVeillonella_parvula0.0120.6030.648
familyLeuconostocaceae-0.0120.6110.655
familyStaphylococcaceae0.0120.6190.663
speciesKlebsiella_phage_KP360.0110.6480.691
genusSlackia0.0110.6490.691
genusSuccinatimonas0.010.6650.705
speciesSuccinatimonas_hippei0.010.6650.705
genusAggregatibacter0.0090.6960.737
speciesEnterobacter_cloacae0.0090.7020.741
speciesHaemophilus_paraphrohaemolyticus-0.0090.7030.741
speciesLactobacillus_vaginalis-0.0090.7120.748
orderAeromonadales0.0080.7170.75
speciesDialister_invisus0.0080.7170.75
speciesLactobacillus_oris0.0070.7640.798
genusStaphylococcus0.0060.7910.824
speciesBacteroides_barnesiae-0.0060.8070.839
familySuccinivibrionaceae0.0050.8380.869
speciesLactococcus_garvieae0.0050.8410.871
genusWeissella0.0040.8510.879
genusPrevotella0.0040.8550.881
speciesClostridium_bartlettii-0.0040.8610.885
speciesBacteroides_sp_1_1_60.0040.8690.892
speciesMegasphaera_elsdenii-0.0030.8830.902
speciesVeillonella_atypica-0.0030.8830.902
genusParvimonas0.0030.8860.903
speciesParvimonas_unclassified0.0030.8920.907
speciesAlistipes_unclassified0.0030.9080.922
speciesClostridium_perfringens0.0020.9240.936
genusTunalikevirus0.0020.9320.942
genusSolobacterium-0.0020.940.946
speciesSolobacterium_moorei-0.0020.940.946
familyMyoviridae-0.0020.9470.951
speciesLactobacillus_sanfranciscensis-0.0010.9730.975
speciesLactobacillus_mucosae0.00.9940.994
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.004022698662920.0008945344105170.000497555381719334811.1322
Type II diabetesChina1831850.002425410722310.002376646459270.0110940577711384912.7202
Type II diabetesDenmark752770.0008357263922530.000758761234820.0516119408822729823.9224
Ulcerative colitisSpain78660.001302487953720.0008945344105170.0790297532788619520.4361
Rheumatoid arthritisChina127980.001650561483370.001330792916030.0927722582459502316.7506
ObesityDenmark1691230.0009218007603240.0005177437562280.1761707237571020433.5536
Colorectal cancerAustria64350.001469384539120.0003962576500610.2655655240221103437.3325
Liver cirrhosisChina1201140.002231339188590.001920639919960.350800491372247875.5081
Type II diabetesSweden53920.0006993830526530.0005148079488240.8375667622872522885.4318
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382