MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2019-12-28 21:02:13 PST
Job id & description: 1603, Dorea
Query type: protein
Count queries & homologs: 1, 47
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Dorea2615404CompleteunknownCOG0655Firmicutesunknown100.0100.099.36
Dorea2270149CompleteunknownCOG0655Firmicutesunknown100.092.3595.86
Dorea2616952CompleteunknownCOG0655Firmicutesunknown100.0100.094.9
Dorea2967567Lack 5'-endunknownCOG0655Firmicutesunknown92.68100.087.29
Dorea2612620CompleteunknownCOG0655unknownunknown100.0100.080.89
Dorea2565834CompleteunknownCOG0655unknownunknown100.099.0576.11
Dorea2670648CompleteunknownCOG0655unknownunknown98.4199.6875.73
Dorea2438780CompleteunknownCOG0655unknownunknown100.096.0274.2
Dorea2432653CompleteunknownCOG0655unknownunknown100.096.0273.25
Dorea2599735CompleteunknownCOG0655unknownunknown99.3698.7367.31
Dorea2621512CompleteunknownCOG0655FirmicutesClostridium100.0100.063.38
Dorea2599586CompleteunknownCOG0655unknownunknown99.3698.7365.71
Dorea2577955CompleteunknownCOG0655Firmicutesunknown100.099.3763.06
Dorea2596158CompleteunknownCOG0655Firmicutesunknown100.099.6862.1
Dorea2596334CompleteunknownCOG0655Firmicutesunknown100.099.6861.78
Dorea2269200CompleteunknownCOG0655Firmicutesunknown100.092.3561.78
Dorea2598617CompleteunknownCOG0655Firmicutesunknown100.099.6861.78
Dorea2151114CompleteunknownCOG0655Firmicutesunknown100.089.7161.78
Dorea3644879Lack 5'-endunknownCOG0655unknownunknown79.6299.679.6
Dorea1491278Lack 5'-endunknownCOG0655unknownunknown100.076.2648.91
Dorea2583131CompleteunknownCOG0655unknownunknown99.36100.049.53
Dorea2076473CompleteunknownCOG0655unknownunknown100.089.0847.98
Dorea2412577CompleteunknownCOG0655Actinobacteriaunknown100.098.7847.87
Dorea2459486CompleteunknownCOG0655ActinobacteriaOlsenella99.0497.5446.89
Dorea1803876CompleteunknownCOG0655unknownunknown97.1383.2948.91
Dorea2464292CompleteunknownCOG0655Actinobacteriaunknown99.0497.5446.58
Dorea2402383CompleteunknownCOG0655unknownunknown97.1396.6748.29
Dorea2474589CompleteunknownCOG0655unknownunknown99.0497.2245.0
Dorea2479132CompleteunknownCOG0655unknownunknown88.8588.2747.55
Dorea2548189CompleteunknownCOG0655Firmicutesunknown97.4599.3733.74
Dorea2558564CompleteunknownCOG0655Firmicutesunknown97.4599.3733.44
Dorea2514699CompleteunknownCOG0655unknownunknown88.8590.6532.32
Dorea2515234CompleteunknownCOG0655Firmicutesunknown88.8590.6532.11
Dorea2791081CompleteunknownCOG0655unknownunknown89.1788.7432.38
Dorea2531220CompleteunknownCOG0655unknownunknown88.8590.6332.44
Dorea2213629CompleteunknownCOG0655FirmicutesClostridium89.8184.9331.89
Dorea3162285Lack 3'-endunknownCOG0655unknownunknown83.4497.533.81
Dorea2597353CompleteunknownCOG0655unknownunknown88.8591.4333.0
Dorea2451232CompleteunknownCOG0655unknownunknown89.1788.3430.2
Dorea2523990CompleteunknownCOG0655unknownunknown96.8294.6930.28
Dorea2491893CompleteunknownCOG0655Firmicutesunknown89.1789.1630.77
Dorea3779294Lack 3'-endunknownCOG0655unknownunknown70.793.8830.54
Dorea2491706CompleteunknownCOG0655Firmicutesunknown89.1789.1630.43
Dorea2528421CompleteunknownCOG0655Firmicutesunknown89.1789.0631.08
Dorea1880840Lack 5'-endunknownCOG0655unknownunknown89.4976.2730.87
Dorea2520447CompleteunknownCOG0655Firmicutesunknown89.1789.0630.41
Dorea3048022Lack 3'-endunknownCOG0655Firmicutesunknown79.9490.5930.74
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.3715.62e-622.65e-59
genusEggerthella0.3384.57e-511.08e-48
speciesEggerthella_unclassified0.3271.04e-471.64e-45
speciesRuminococcus_torques0.3121.69e-431.99e-41
speciesClostridium_bolteae0.2884.12e-373.89e-35
orderCoriobacteriales0.2861.44e-369.71e-35
familyCoriobacteriaceae0.2861.44e-369.71e-35
genusFlavonifractor0.2812.47e-351.3e-33
speciesFlavonifractor_plautii0.2812.47e-351.3e-33
genusAnaerostipes0.2798.95e-353.94e-33
familyClostridiales_noname0.2799.18e-353.94e-33
speciesLachnospiraceae_bacterium_1_4_56FAA0.2791.1e-344.33e-33
genusLachnospiraceae_noname0.2716.71e-332.44e-31
speciesRuminococcus_gnavus0.271.4e-324.72e-31
phylumActinobacteria0.2684.85e-321.43e-30
classActinobacteria0.2684.85e-321.43e-30
speciesRuminococcus_sp_5_1_39BFAA0.2652.04e-315.66e-30
speciesLachnospiraceae_bacterium_5_1_63FAA0.2643.54e-319.28e-30
genusCoprobacillus0.2643.88e-319.64e-30
speciesEggerthella_lenta0.2621.13e-302.67e-29
speciesClostridiales_bacterium_1_7_47FAA0.2611.32e-302.97e-29
speciesClostridium_hathewayi0.2587.15e-301.53e-28
familyClostridiaceae0.2571.56e-293.2e-28
speciesClostridium_clostridioforme0.2554.89e-299.62e-28
genusClostridium0.2538.52e-291.61e-27
speciesClostridium_symbiosum0.2513.46e-286.28e-27
speciesBlautia_producta0.2498.84e-281.55e-26
speciesEubacterium_hallii0.2457.33e-271.24e-25
speciesCoprobacillus_unclassified0.2399.08e-261.48e-24
speciesEubacterium_ramulus0.2365.51e-258.67e-24
speciesLachnospiraceae_bacterium_5_1_57FAA0.2331.53e-242.33e-23
speciesClostridium_ramosum0.237.42e-241.09e-22
familyPrevotellaceae-0.2222.67e-223.82e-21
genusClostridiales_noname0.2214.07e-225.65e-21
speciesErysipelotrichaceae_bacterium_2_2_44A0.2156.62e-218.93e-20
speciesErysipelotrichaceae_bacterium_6_1_450.2131.46e-201.91e-19
speciesClostridium_asparagiforme0.2121.71e-202.18e-19
speciesBlautia_hydrogenotrophica0.2097.87e-209.78e-19
speciesClostridium_citroniae0.2036.87e-198.31e-18
speciesAnaerostipes_hadrus0.2038.7e-191.03e-17
genusPrevotella-0.2021.24e-181.43e-17
genusRuminococcus0.22.53e-182.84e-17
orderBifidobacteriales0.1993.91e-184.12e-17
familyBifidobacteriaceae0.1993.91e-184.12e-17
speciesRuminococcus_obeum0.1993.93e-184.12e-17
genusBifidobacterium0.1985.53e-185.67e-17
speciesPrevotella_copri-0.191.17e-161.17e-15
genusDorea0.1882.15e-162.09e-15
speciesAnaerotruncus_colihominis0.1882.17e-162.09e-15
speciesLachnospiraceae_bacterium_6_1_63FAA0.1882.38e-162.25e-15
speciesErysipelotrichaceae_bacterium_21_30.1873.43e-163.17e-15
speciesAnaerostipes_unclassified0.1856.48e-165.88e-15
speciesBifidobacterium_longum0.1813.05e-152.72e-14
genusHoldemania0.184.84e-154.23e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1797.16e-156.14e-14
familyStreptococcaceae0.1787.68e-156.47e-14
genusStreptococcus0.1771.19e-149.85e-14
speciesLachnospiraceae_bacterium_2_1_58FAA0.1761.7e-141.38e-13
speciesHaemophilus_parainfluenzae-0.1752.61e-142.09e-13
genusHaemophilus-0.1743e-142.36e-13
speciesDorea_formicigenerans0.1734.85e-143.75e-13
orderPasteurellales-0.1735.37e-144.02e-13
familyPasteurellaceae-0.1735.37e-144.02e-13
classErysipelotrichia0.1726.53e-144.67e-13
orderErysipelotrichales0.1726.53e-144.67e-13
familyErysipelotrichaceae0.1726.53e-144.67e-13
speciesAlistipes_shahii-0.1718.81e-146.21e-13
phylumBacteroidetes-0.1719.39e-146.36e-13
classBacteroidia-0.1719.43e-146.36e-13
orderBacteroidales-0.1719.43e-146.36e-13
familyLachnospiraceae0.1673.28e-132.18e-12
speciesEubacterium_dolichum0.1656.35e-134.16e-12
speciesOdoribacter_splanchnicus-0.1641.09e-127.05e-12
classClostridia0.1631.33e-128.37e-12
orderClostridiales0.1631.33e-128.37e-12
genusOdoribacter-0.1621.74e-121.08e-11
genusGordonibacter0.1523.82e-112.31e-10
speciesGordonibacter_pamelaeae0.1523.82e-112.31e-10
genusSolobacterium0.1524.09e-112.41e-10
speciesSolobacterium_moorei0.1524.09e-112.41e-10
orderLactobacillales0.157.82e-114.56e-10
classBacilli0.158.19e-114.71e-10
speciesAlistipes_senegalensis-0.1481.12e-106.37e-10
genusActinomyces0.1481.44e-108e-10
speciesClostridium_leptum0.1481.44e-108e-10
phylumFirmicutes0.1471.49e-108.18e-10
familyActinomycetaceae0.1471.56e-108.46e-10
speciesStreptococcus_salivarius0.1471.69e-109.06e-10
speciesEubacterium_limosum0.1453.37e-101.79e-09
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1436.02e-103.16e-09
speciesEubacterium_sp_3_1_310.1418.55e-104.43e-09
speciesStreptococcus_thermophilus0.141.16e-095.95e-09
genusErysipelotrichaceae_noname0.141.2e-096.09e-09
speciesClostridium_sp_ATCC_BAA_4420.141.28e-096.43e-09
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1363.63e-091.8e-08
speciesAlistipes_putredinis-0.1354.96e-092.44e-08
speciesLachnospiraceae_bacterium_7_1_58FAA0.1346.65e-093.24e-08
speciesEubacterium_eligens-0.1337.19e-093.46e-08
speciesPropionibacterium_freudenreichii0.1321.08e-085.15e-08
speciesStreptococcus_australis0.1291.95e-089.2e-08
familyBacillales_noname0.1292.09e-089.67e-08
genusGemella0.1292.09e-089.67e-08
speciesPrevotella_stercorea-0.1282.47e-081.13e-07
genusCollinsella0.1282.57e-081.17e-07
speciesStreptococcus_parasanguinis0.1282.64e-081.19e-07
speciesErysipelotrichaceae_bacterium_3_1_530.1273.53e-081.57e-07
speciesClostridium_bartlettii0.1273.98e-081.76e-07
speciesStreptococcus_sanguinis0.1255.48e-082.39e-07
speciesCoprococcus_sp_ART55_1-0.1247.9e-083.42e-07
genusClostridiaceae_noname0.1211.38e-075.87e-07
speciesClostridiaceae_bacterium_JC1180.1211.38e-075.87e-07
familyPeptostreptococcaceae0.1211.47e-076.2e-07
speciesAlistipes_finegoldii-0.1211.72e-077.18e-07
orderBacillales0.122.01e-078.32e-07
genusCatenibacterium-0.1192.53e-071.03e-06
speciesCatenibacterium_mitsuokai-0.1192.53e-071.03e-06
orderActinomycetales0.1183.4e-071.37e-06
familyBacteroidales_noname-0.1173.77e-071.48e-06
genusBacteroidales_noname-0.1173.77e-071.48e-06
speciesBacteroidales_bacterium_ph8-0.1173.77e-071.48e-06
speciesButyrivibrio_crossotus-0.1174.2e-071.64e-06
genusPeptostreptococcaceae_noname0.1156.17e-072.39e-06
genusAdlercreutzia0.1147.84e-072.98e-06
speciesAdlercreutzia_equolifaciens0.1147.84e-072.98e-06
familyRuminococcaceae0.1138.73e-073.3e-06
familyRikenellaceae-0.1139.81e-073.65e-06
genusAlistipes-0.1139.81e-073.65e-06
speciesDorea_longicatena0.1121.3e-064.79e-06
genusPropionibacterium0.1121.33e-064.87e-06
speciesParaprevotella_unclassified-0.112.05e-067.44e-06
genusParaprevotella-0.1092.18e-067.85e-06
familyEnterococcaceae0.1092.2e-067.87e-06
genusEnterococcus0.1082.82e-061e-05
speciesClostridium_sp_KLE_17550.1082.99e-061.05e-05
speciesCoriobacteriaceae_bacterium_phI0.1073.8e-061.33e-05
speciesParaprevotella_clara-0.1063.99e-061.38e-05
speciesParaprevotella_xylaniphila-0.1064.23e-061.46e-05
speciesHoldemania_sp_AP20.1054.95e-061.69e-05
speciesCoprococcus_comes0.1055.35e-061.82e-05
genusCoriobacteriaceae_noname0.1055.51e-061.86e-05
speciesMitsuokella_multacida-0.1055.69e-061.9e-05
speciesHoldemania_filiformis0.1055.86e-061.95e-05
speciesLactobacillus_delbrueckii0.1045.97e-061.97e-05
speciesSubdoligranulum_sp_4_3_54A2FAA0.1037.42e-062.43e-05
speciesDesulfovibrio_piger-0.1038.36e-062.72e-05
speciesBacteroides_coprophilus-0.1029.42e-063.05e-05
genusButyrivibrio-0.11.51e-054.85e-05
familySutterellaceae-0.11.62e-055.17e-05
genusOxalobacter-0.0981.99e-056.26e-05
speciesOxalobacter_formigenes-0.0981.99e-056.26e-05
genusBarnesiella-0.0982.05e-056.37e-05
speciesBarnesiella_intestinihominis-0.0982.05e-056.37e-05
orderBurkholderiales-0.0963.05e-059.41e-05
familyOxalobacteraceae-0.0944.44e-050.000136
classBetaproteobacteria-0.0944.55e-050.000139
speciesBifidobacterium_animalis0.0935.27e-050.000159
speciesDialister_invisus0.0926.21e-050.000187
speciesBacteroides_plebeius-0.0926.3e-050.000188
familyPropionibacteriaceae0.0927.2e-050.000214
speciesEnterococcus_faecalis0.0918.53e-050.000252
familyOscillospiraceae0.0918.67e-050.000253
genusOscillibacter0.0918.67e-050.000253
genusPhascolarctobacterium-0.098.97e-050.000258
speciesPhascolarctobacterium_succinatutens-0.098.97e-050.000258
genusSiphoviridae_noname0.099.41e-050.000269
speciesCollinsella_aerofaciens0.0890.000110.000313
genusLactococcus0.0890.0001250.000353
speciesEubacterium_biforme-0.0880.0001330.000374
speciesRuminococcus_callidus-0.0880.0001340.000374
speciesRoseburia_hominis-0.0880.0001480.000411
genusPeptoniphilus0.0870.0001580.000436
speciesCoprobacillus_sp_29_10.0870.0001640.00045
speciesRuminococcus_champanellensis-0.0870.0001670.000456
genusMitsuokella-0.0870.0001710.000464
speciesMitsuokella_unclassified-0.0850.0002280.000615
speciesStreptococcus_mutans0.0850.0002540.000681
speciesOscillibacter_unclassified0.0840.0002560.000683
speciesLachnospiraceae_bacterium_1_1_57FAA0.0840.0002760.000732
classMethanobacteria-0.0840.0002970.000774
orderMethanobacteriales-0.0840.0002970.000774
familyMethanobacteriaceae-0.0840.0002970.000774
genusMethanobrevibacter-0.0830.0003230.000838
speciesMethanobrevibacter_smithii-0.0830.0003520.000908
speciesLactobacillus_ruminis-0.0820.0003560.000913
speciesParabacteroides_merdae-0.0820.0003760.000959
speciesBacteroides_vulgatus-0.0820.0003890.000987
speciesLactococcus_lactis0.0810.0004440.00112
phylumEuryarchaeota-0.080.0005390.00135
genusRuminococcaceae_noname0.0790.000590.00147
speciesRuminococcaceae_bacterium_D160.0790.000590.00147
speciesClostridium_nexile0.0790.000620.00153
familyClostridiales_Family_XI_Incertae_Sedis0.0790.0006230.00153
genusParasutterella-0.0780.0007540.00183
speciesParasutterella_excrementihominis-0.0780.0007540.00183
speciesClostridium_perfringens-0.0780.000790.00191
genusBilophila0.0770.0008070.00194
orderCaudovirales0.0770.000840.00201
speciesFusobacterium_ulcerans0.0770.0009160.00218
phylumViruses_noname0.0760.0009840.00232
classViruses_noname0.0760.0009840.00232
speciesLactobacillus_casei_paracasei0.0750.001090.00256
speciesBilophila_unclassified0.0750.001150.00269
speciesBacteroides_finegoldii-0.0750.001160.0027
genusLeuconostoc0.0750.001190.00274
speciesBacteroides_caccae-0.0750.001190.00274
speciesRuminococcus_bromii0.0750.00120.00275
speciesLachnospiraceae_bacterium_2_1_46FAA0.0740.001450.00331
speciesBilophila_wadsworthia0.0740.001470.00334
genusButyricicoccus0.0730.001530.00344
speciesButyricicoccus_pullicaecorum0.0730.001530.00344
speciesClostridium_sp_L2_50-0.0720.001930.00432
genusButyricimonas-0.0720.001970.00437
speciesButyricimonas_synergistica-0.0720.001970.00437
speciesCoprococcus_eutactus-0.0710.0020.00441
speciesLactobacillus_acidophilus0.0710.002080.00457
genusDesulfovibrio-0.0710.002150.0047
genusPeptostreptococcus0.0710.002280.00496
speciesMegamonas_funiformis-0.0690.002830.00613
speciesHoldemania_unclassified0.0680.003190.00688
speciesBacteroides_nordii-0.0670.00350.00751
speciesParabacteroides_sp_D13-0.0670.003560.0076
speciesPrevotella_buccae-0.0670.003610.0076
speciesMethanobrevibacter_unclassified-0.0670.003610.0076
genusCoprobacter-0.0670.003640.0076
speciesCoprobacter_fastidiosus-0.0670.003640.0076
speciesSutterella_wadsworthensis-0.0670.003640.0076
genusAggregatibacter-0.0660.00410.00853
familySiphoviridae0.0660.004250.0088
speciesRoseburia_inulinivorans-0.0650.004610.0095
speciesBacteroides_xylanisolvens-0.0650.004660.00956
speciesEnterococcus_faecium0.0650.004710.00962
speciesStreptococcus_vestibularis0.0650.004970.0101
speciesKlebsiella_pneumoniae-0.0650.005070.0103
phylumSynergistetes-0.0640.005610.0112
classSynergistia-0.0640.005610.0112
orderSynergistales-0.0640.005610.0112
familySynergistaceae-0.0640.005610.0112
speciesStreptococcus_gordonii0.0640.005850.0116
speciesLactococcus_phage_bIL670.0630.006190.0122
speciesBacteroides_intestinalis-0.0630.006260.0123
speciesGemella_morbillorum0.0630.006430.0126
speciesAlistipes_sp_HGB5-0.0630.006720.0131
speciesCoprobacillus_sp_D60.0620.007190.014
genusDialister0.0620.007260.014
genusBurkholderiales_noname-0.0620.007330.0141
speciesBurkholderiales_bacterium_1_1_47-0.0620.007330.0141
genusSutterella-0.0620.007530.0144
speciesClostridium_spiroforme0.0620.007740.0147
speciesDialister_succinatiphilus-0.0610.008270.0157
speciesBacteroides_fragilis0.0610.008320.0157
speciesEubacterium_siraeum-0.060.009120.0171
familyPorphyromonadaceae-0.060.009640.018
familyBurkholderiales_noname-0.060.009670.018
speciesProteus_mirabilis0.0590.01090.0203
speciesAlistipes_unclassified0.0590.01120.0207
speciesParvimonas_unclassified0.0580.01190.0219
genusParvimonas0.0580.0120.022
speciesBacteroides_faecis-0.0580.0120.022
speciesBacteroides_coprocola-0.0580.01210.0221
genusPyramidobacter-0.0560.01570.0284
speciesPyramidobacter_piscolens-0.0560.01570.0284
speciesLactobacillus_rhamnosus0.0560.01590.0286
speciesLachnospiraceae_bacterium_3_1_46FAA0.0550.01670.03
speciesStreptococcus_phage_Sfi210.0550.01830.0326
speciesAcidaminococcus_unclassified0.0550.01830.0326
speciesAggregatibacter_segnis-0.0550.01840.0326
speciesOscillibacter_sp_KLE_17450.0540.01870.0331
speciesMegasphaera_elsdenii-0.0530.02070.0365
speciesBifidobacterium_pseudocatenulatum0.0530.02150.0377
speciesStreptococcus_mitis_oralis_pneumoniae0.0530.0230.0402
genusAnaerotruncus0.0530.02310.0402
speciesLactococcus_phage_jm20.0520.02330.0404
speciesBifidobacterium_bifidum0.0520.02420.0418
speciesLactobacillus_mucosae-0.0510.02790.0481
genusLambdalikevirus0.050.02920.0501
genusKlebsiella-0.0490.03340.0571
speciesBacteroides_stercoris-0.0490.03420.0583
speciesEscherichia_coli0.0490.03470.0589
speciesBifidobacterium_catenulatum0.0480.03740.0633
speciesSlackia_piriformis0.0480.03990.0673
familyFusobacteriaceae0.0470.04350.0731
familyPodoviridae0.0460.04480.075
genusEscherichia0.0460.04560.0761
speciesStreptococcus_anginosus0.0460.04680.0778
speciesEggerthella_sp_1_3_56FAA0.0460.04770.079
speciesLactobacillus_salivarius-0.0460.04790.0791
speciesAnaerotruncus_unclassified-0.0450.04920.0808
genusEnterobacter-0.0450.04930.0808
speciesMegamonas_hypermegale-0.0450.05120.0835
speciesFusobacterium_varium0.0450.05140.0835
speciesBifidobacterium_adolescentis0.0450.05150.0835
genusC2likevirus0.0450.05430.0878
speciesBifidobacterium_breve0.0440.05450.0878
speciesEnterobacter_cloacae-0.0440.0550.0883
speciesPeptostreptococcus_anaerobius0.0440.05650.0904
speciesOdoribacter_unclassified0.0440.05790.0923
speciesVeillonella_dispar-0.0440.05850.093
genusFusobacterium0.0440.05890.0931
speciesPrevotella_bivia0.0440.0590.0931
familyLactobacillaceae0.0430.06050.0952
speciesEubacterium_cylindroides0.0430.06120.0958
speciesWeissella_confusa-0.0430.06130.0958
classDeltaproteobacteria0.0430.06240.0966
orderDesulfovibrionales0.0430.06240.0966
familyDesulfovibrionaceae0.0430.06240.0966
speciesBacteroides_uniformis0.0430.06380.0984
speciesCollinsella_unclassified0.0430.06510.1
genusProteus0.0420.06830.104
speciesParabacteroides_goldsteinii-0.0420.06830.104
speciesEnterobacteria_phage_HK5440.0420.07010.107
genusAcidaminococcus0.0420.07060.107
speciesC2likevirus_unclassified0.0420.07170.108
speciesVeillonella_atypica-0.0410.07390.111
familyLeuconostocaceae0.0410.0770.116
speciesLactobacillus_sanfranciscensis-0.0410.07730.116
speciesPeptostreptococcus_stomatis0.0410.07850.117
speciesBacteroides_pectinophilus-0.0410.07920.118
phylumFusobacteria0.040.08190.121
classFusobacteriia0.040.08190.121
orderFusobacteriales0.040.08190.121
speciesLactobacillus_plantarum0.040.08370.123
genusSlackia0.040.08590.126
genusSutterellaceae_unclassified-0.040.08620.126
speciesCollinsella_intestinalis0.0370.110.16
genusOlsenella0.0360.1190.173
speciesStreptococcus_lutetiensis0.0360.1230.178
speciesOdoribacter_laneus0.0350.1280.185
speciesRoseburia_unclassified0.0350.1290.186
genusLactobacillus0.0340.1380.197
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0340.1380.197
genusTunalikevirus-0.0340.1390.198
speciesLactobacillus_amylovorus0.0340.140.199
speciesLactococcus_phage_phi70.0340.1410.2
genusEubacterium0.0340.1420.2
speciesLactococcus_phage_P6800.0340.1420.2
speciesBacteroides_cellulosilyticus-0.0340.1430.201
familyEubacteriaceae0.0340.1440.202
speciesMegamonas_unclassified-0.0340.1450.202
genusMegamonas-0.0330.1480.206
orderAeromonadales-0.0320.1610.223
familyStaphylococcaceae0.0320.1610.223
speciesVeillonella_unclassified-0.0320.1620.224
speciesSutterella_parvirubra0.0320.1670.229
speciesBacteroides_ovatus0.0320.1670.229
genusPseudoflavonifractor0.0310.1750.239
speciesPseudoflavonifractor_capillosus0.0310.1750.239
phylumProteobacteria-0.0310.1780.242
familyBacteroidaceae0.0310.180.243
genusBacteroides0.0310.180.243
speciesDesulfovibrio_desulfuricans-0.0310.1830.247
speciesCampylobacter_concisus-0.0310.1860.249
speciesAlistipes_indistinctus-0.0310.1860.249
familyMyoviridae0.0310.1870.25
speciesBacteroides_fluxus-0.030.1890.252
genusMethanosphaera-0.030.1930.256
speciesMethanosphaera_stadtmanae-0.030.1930.256
genusMyoviridae_noname0.030.1960.259
genusSuccinatimonas-0.030.1970.259
speciesSuccinatimonas_hippei-0.030.1970.259
speciesBacteroides_eggerthii-0.0290.2030.266
speciesKlebsiella_phage_KP36-0.0290.2040.267
familySuccinivibrionaceae-0.0290.2050.267
genusSubdoligranulum0.0290.2090.272
familyAcidaminococcaceae-0.0290.2120.275
speciesBacteroides_massiliensis-0.0290.2130.275
speciesCoprococcus_catus0.0280.2290.295
genusStaphylococcus0.0270.2380.305
speciesAlistipes_sp_AP110.0270.2380.305
speciesOscillibacter_sp_KLE_17280.0270.240.307
speciesRothia_mucilaginosa0.0270.2420.308
classEpsilonproteobacteria-0.0270.2430.308
orderCampylobacterales-0.0270.2430.308
genusAcidaminococcaceae_unclassified0.0270.2520.319
genusCoprococcus0.0260.2550.322
speciesParabacteroides_unclassified0.0260.2570.323
speciesAlistipes_onderdonkii-0.0260.2580.324
genusRothia0.0260.2630.329
familyMicrococcaceae0.0260.2650.331
speciesPorphyromonas_uenonis0.0250.2710.337
classNegativicutes-0.0250.2730.338
orderSelenomonadales-0.0250.2730.338
speciesStreptococcus_pasteurianus0.0250.2850.352
orderEnterobacteriales0.0250.2880.354
familyEnterobacteriaceae0.0250.2880.354
speciesLactobacillus_fermentum-0.0240.2950.36
genusMorganella0.0240.2960.36
speciesMorganella_morganii0.0240.2960.36
speciesEnterobacter_aerogenes-0.0240.2960.36
speciesCitrobacter_unclassified-0.0240.2990.362
speciesBacteroides_thetaiotaomicron-0.0240.2990.362
genusMegasphaera-0.0240.3060.369
speciesBacteroides_salyersiae-0.0230.3120.376
genusParabacteroides-0.0230.3150.378
speciesFusobacterium_nucleatum-0.0230.3290.394
speciesMegasphaera_micronuciformis-0.0220.3380.404
genusActinobacillus-0.0210.3580.426
speciesActinobacillus_unclassified-0.0210.3580.426
speciesBacteroides_salanitronis0.0210.3650.433
speciesCollinsella_tanakaei0.0210.3750.444
speciesButyrivibrio_unclassified0.0190.4070.48
speciesBacteroides_sp_4_3_47FAA-0.0190.410.481
speciesEscherichia_unclassified0.0190.410.481
speciesSubdoligranulum_unclassified0.0190.4180.49
speciesRuminococcus_sp_JC3040.0180.4430.517
speciesFusobacterium_mortiferum-0.0180.4440.517
orderViruses_noname0.0180.4470.52
orderPseudomonadales0.0180.4490.521
speciesEubacterium_ventriosum0.0170.4590.531
speciesTuricibacter_sanguinis0.0170.4610.532
speciesBifidobacterium_angulatum-0.0170.4650.535
speciesLactococcus_garvieae0.0170.4670.536
genusFaecalibacterium-0.0170.4710.538
speciesFaecalibacterium_prausnitzii-0.0170.4710.538
familyCampylobacteraceae-0.0170.4750.542
speciesOlsenella_unclassified0.0160.4820.548
speciesLactobacillus_crispatus0.0160.5020.57
genusCampylobacter-0.0150.5040.57
genusVeillonella-0.0150.5060.571
speciesDorea_unclassified-0.0150.5130.578
speciesKlebsiella_unclassified0.0150.5230.588
speciesParabacteroides_sp_20_3-0.0140.5340.597
speciesHaemophilus_paraphrohaemolyticus-0.0140.5350.597
speciesAcidaminococcus_fermentans-0.0140.5350.597
genusCitrobacter-0.0140.5460.608
speciesLeuconostoc_lactis0.0140.5480.609
speciesLactobacillus_oris-0.0140.5570.617
genusTuricibacter0.0130.5610.62
speciesLactobacillus_gasseri-0.0130.580.638
speciesMegamonas_rupellensis-0.0130.580.638
genusWeissella-0.0130.5870.644
familyViruses_noname0.0120.5920.647
genusViruses_noname0.0120.5920.647
genusPorphyromonas0.0120.5970.651
speciesPorphyromonas_asaccharolytica0.0110.6210.675
genusPantoea-0.0110.6430.696
speciesPantoea_unclassified-0.0110.6430.696
speciesAcidaminococcus_intestini0.0090.6860.741
speciesMegasphaera_unclassified-0.0080.7180.774
speciesLactococcus_phage_936_sensu_lato-0.0080.7220.776
classGammaproteobacteria-0.0080.7270.78
speciesTuricibacter_unclassified0.0080.7360.788
speciesRoseburia_intestinalis0.0070.7480.799
genusRoseburia-0.0070.7580.805
speciesWeissella_cibaria-0.0070.7590.805
speciesParabacteroides_johnsonii0.0070.7590.805
speciesBacteroides_barnesiae0.0070.7620.806
speciesLactobacillus_reuteri-0.0070.7680.811
speciesBifidobacterium_dentium0.0060.7860.828
speciesLactobacillus_vaginalis-0.0060.8020.843
speciesKlebsiella_oxytoca-0.0060.8090.849
speciesVeillonella_parvula-0.0050.8270.865
speciesBacteroides_dorei0.0050.8280.865
speciesHaemophilus_sputorum-0.0050.8460.881
speciesBacteroides_oleiciplenus0.0040.8590.893
speciesEubacterium_rectale-0.0040.8690.901
speciesPeptostreptococcaceae_noname_unclassified0.0030.8810.912
speciesBacteroides_clarus-0.0030.8940.923
speciesBacteroides_sp_1_1_60.0030.90.927
speciesCitrobacter_freundii-0.0030.9110.927
speciesStreptococcus_infantarius0.0030.9130.927
phylumVerrucomicrobia-0.0020.9150.927
classVerrucomicrobiae-0.0020.9150.927
orderVerrucomicrobiales-0.0020.9150.927
familyVerrucomicrobiaceae-0.0020.9150.927
genusAkkermansia-0.0020.9150.927
speciesAkkermansia_muciniphila-0.0020.9150.927
familyVeillonellaceae0.0020.9240.934
speciesRuminococcus_lactaris-0.0020.9290.937
speciesParabacteroides_distasonis0.0020.9350.941
speciesBacteroides_sp_2_1_220.0020.9420.946
speciesKlebsiella_sp_MS_92_30.0010.9540.956
speciesBacteroides_sp_3_1_190.0010.9790.979
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.01220203133340.008858946985460.0026455373244623207.66714
Ulcerative colitisSpain78660.01773606210750.01371608420070.1923711647791044334.4494
Crohns diseaseSpain17660.01616193406150.01371608420070.208340659291711456.9044
Type II diabetesDenmark752770.006943462064260.008569124963280.4399841556681910162.6119
Colorectal cancerAustria64350.01340889442880.01258880760110.7335966192492384780.6841
Liver cirrhosisChina1201140.006593210890130.006553970032860.7503389742522722291.4441
Rheumatoid arthritisChina127980.006535397786150.007391491258530.9054613483762779392.6835
Type II diabetesSweden53920.01690670886930.02266543922440.9356697870312784694.2973
ObesityDenmark1691230.008860992818450.008258582480230.9481030873842934096.4782
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382