MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-06 10:42:34 PST
Job id & description: 1612, CP lyase
Query type: protein
Count queries & homologs: 1, 62
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P16688|PHNJ_ECOLI2691719CompleteK06163COG3627ProteobacteriaEscherichia100.090.9498.93
sp|P16688|PHNJ_ECOLI3131660CompleteK06163COG3627ProteobacteriaEnterobacter100.0100.096.09
sp|P16688|PHNJ_ECOLI3131576CompleteK06163COG3627ProteobacteriaEnterobacter100.0100.095.02
sp|P16688|PHNJ_ECOLI3132427CompleteK06163COG3627ProteobacteriaEnterobacter100.0100.095.02
sp|P16688|PHNJ_ECOLI3117625CompleteK06163COG3627ProteobacteriaCitrobacter99.2998.9495.34
sp|P16688|PHNJ_ECOLI3117803CompleteK06163COG3627ProteobacteriaCitrobacter99.2998.9495.34
sp|P16688|PHNJ_ECOLI3131532CompleteK06163COG3627ProteobacteriaEnterobacter100.0100.093.59
sp|P16688|PHNJ_ECOLI3106127CompleteK06163COG3627ProteobacteriaKlebsiella100.0100.092.91
sp|P16688|PHNJ_ECOLI3114612CompleteK06163COG3627ProteobacteriaEnterobacter100.0100.092.55
sp|P16688|PHNJ_ECOLI3106497CompleteK06163COG3627ProteobacteriaKlebsiella100.0100.092.55
sp|P16688|PHNJ_ECOLI3079195CompleteK06163COG3627ProteobacteriaKlebsiella98.9397.8992.81
sp|P16688|PHNJ_ECOLI3117812CompleteK06163COG3627Proteobacteriaunknown98.9398.5889.57
sp|P16688|PHNJ_ECOLI3867543Lack 5'-endK06163COG3627ProteobacteriaCitrobacter85.05100.093.72
sp|P16688|PHNJ_ECOLI2917836CompleteK06163COG3627ProteobacteriaBilophila99.2994.973.84
sp|P16688|PHNJ_ECOLI2831092CompleteK06163COG3627ProteobacteriaDesulfovibrio97.5191.6474.09
sp|P16688|PHNJ_ECOLI2895742CompleteK06163COG3627unknownunknown95.7391.1975.46
sp|P16688|PHNJ_ECOLI3825045CompleteK06163COG3627ProteobacteriaBilophila84.3498.3473.0
sp|P16688|PHNJ_ECOLI3119326CompleteK06163COG3627unknownunknown97.5197.8658.55
sp|P16688|PHNJ_ECOLI3105922CompleteK06163COG3627unknownunknown97.5197.5258.18
sp|P16688|PHNJ_ECOLI3087634CompleteK06163COG3627unknownunknown96.896.4757.14
sp|P16688|PHNJ_ECOLI3034873CompleteK06163COG3627Firmicutesunknown98.5896.8654.68
sp|P16688|PHNJ_ECOLI3134285CompleteK06163COG3627FirmicutesClostridium98.5898.9355.04
sp|P16688|PHNJ_ECOLI3048259CompleteK06163COG3627Firmicutesunknown96.4495.156.25
sp|P16688|PHNJ_ECOLI3125893CompleteK06163COG3627unknownunknown97.5197.8657.09
sp|P16688|PHNJ_ECOLI3024724CompleteK06163COG3627unknownunknown96.4494.7756.25
sp|P16688|PHNJ_ECOLI3098925CompleteK06163COG3627unknownunknown98.5898.2355.4
sp|P16688|PHNJ_ECOLI3130793CompleteK06163COG3627unknownunknown97.5197.8657.45
sp|P16688|PHNJ_ECOLI3129912CompleteK06163COG3627unknownunknown97.5197.8656.36
sp|P16688|PHNJ_ECOLI3105585CompleteK06163COG3627unknownunknown97.1597.1656.57
sp|P16688|PHNJ_ECOLI3206311CompleteK06163COG3627unknownunknown96.4498.5555.88
sp|P16688|PHNJ_ECOLI2984542CompleteK06163COG3627Firmicutesunknown99.6496.5554.09
sp|P16688|PHNJ_ECOLI3136853CompleteK06163COG3627unknownunknown95.7396.4355.56
sp|P16688|PHNJ_ECOLI3212195CompleteK06163COG3627unknownunknown95.7397.8355.19
sp|P16688|PHNJ_ECOLI3120876CompleteK06163COG3627unknownunknown96.4496.854.78
sp|P16688|PHNJ_ECOLI3136114CompleteK06163COG3627unknownunknown95.3796.0757.25
sp|P16688|PHNJ_ECOLI3009479CompleteK06163COG3627unknownunknown99.6497.5752.31
sp|P16688|PHNJ_ECOLI3130117CompleteK06163COG3627unknownunknown96.4496.854.41
sp|P16688|PHNJ_ECOLI3155484CompleteK06163COG3627unknownunknown94.6695.755.81
sp|P16688|PHNJ_ECOLI3066870Lack 5'-endK06163COG3627unknownunknown95.7394.7455.93
sp|P16688|PHNJ_ECOLI3095835CompleteK06163COG3627FirmicutesClostridium97.8697.5353.99
sp|P16688|PHNJ_ECOLI3069512CompleteK06163COG3627Firmicutesunknown97.1596.1455.11
sp|P16688|PHNJ_ECOLI3081458CompleteK06163COG3627unknownunknown97.1596.4858.76
sp|P16688|PHNJ_ECOLI2967479CompleteK06163COG3627ActinobacteriaEggerthella94.6691.7556.18
sp|P16688|PHNJ_ECOLI3015408CompleteK06163COG3627ActinobacteriaEggerthella97.1596.5354.32
sp|P16688|PHNJ_ECOLI3000458CompleteK06163COG3627unknownunknown97.1594.8159.12
sp|P16688|PHNJ_ECOLI3132997CompleteK06163COG3627unknownunknown94.6695.0256.55
sp|P16688|PHNJ_ECOLI3090843CompleteK06163COG3627unknownunknown97.1596.8253.28
sp|P16688|PHNJ_ECOLI2871453CompleteK06163COG3627Actinobacteriaunknown94.6689.954.68
sp|P16688|PHNJ_ECOLI3081857CompleteK06163COG3627unknownunknown95.3794.7258.74
sp|P16688|PHNJ_ECOLI2933153CompleteK06163COG3627unknownunknown95.0291.4752.99
sp|P16688|PHNJ_ECOLI3126699CompleteK06163COG3627unknownunknown97.1597.5152.19
sp|P16688|PHNJ_ECOLI3111446CompleteK06163COG3627unknownunknown96.4496.4558.46
sp|P16688|PHNJ_ECOLI2748349CompleteK06163COG3627unknownunknown95.0287.8753.73
sp|P16688|PHNJ_ECOLI3112537CompleteK06163COG3627unknownunknown96.4496.4557.35
sp|P16688|PHNJ_ECOLI2339442CompleteK06163COG3627ActinobacteriaEggerthella94.6679.753.56
sp|P16688|PHNJ_ECOLI2871322Lack 5'-endK06163COG3627ActinobacteriaEggerthella94.6689.953.56
sp|P16688|PHNJ_ECOLI2899997CompleteK06163COG3627unknownunknown97.8693.5654.35
sp|P16688|PHNJ_ECOLI2919084CompleteK06163COG3627unknownunknown97.1593.255.43
sp|P16688|PHNJ_ECOLI3819795Lack 3'-endK06163COG3627Firmicutesunknown84.797.9456.3
sp|P16688|PHNJ_ECOLI3951107Lack 5'-endK06163COG3627FirmicutesClostridium82.2198.7252.59
sp|P16688|PHNJ_ECOLI3308049CompleteK06163COG3627unknownunknown96.0999.2644.81
sp|P16688|PHNJ_ECOLI4358322Lack 5'-endK06163COG3627unknownunknown71.5393.5247.52
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderEnterobacteriales0.4969.77e-1172.31e-114
familyEnterobacteriaceae0.4969.77e-1172.31e-114
genusEscherichia0.4311.46e-852.3e-83
classGammaproteobacteria0.4191.38e-801.63e-78
speciesEscherichia_coli0.4187.54e-807.12e-78
genusKlebsiella0.4162.58e-792.03e-77
speciesKlebsiella_pneumoniae0.4051.36e-749.17e-73
speciesClostridium_bolteae0.3824.5e-662.65e-64
phylumProteobacteria0.382.11e-651.11e-63
speciesClostridium_citroniae0.3437.9e-533.73e-51
genusEggerthella0.3413.99e-521.71e-50
speciesEggerthella_unclassified0.3383.14e-511.24e-49
speciesClostridium_hathewayi0.3213.67e-461.33e-44
speciesClostridium_symbiosum0.3091.37e-424.62e-41
speciesRuminococcus_gnavus0.2959.15e-392.88e-37
genusBilophila0.2831.01e-352.98e-34
genusFlavonifractor0.2821.47e-353.85e-34
speciesFlavonifractor_plautii0.2821.47e-353.85e-34
speciesBilophila_unclassified0.2813.02e-357.5e-34
speciesClostridiales_bacterium_1_7_47FAA0.286.35e-351.5e-33
familyClostridiaceae0.2772.65e-345.96e-33
genusPantoea0.2765.53e-341.13e-32
speciesPantoea_unclassified0.2765.53e-341.13e-32
genusClostridium0.2741.82e-333.58e-32
speciesEnterobacter_cloacae0.2732.76e-335.21e-32
genusEnterobacter0.2723.61e-336.55e-32
classDeltaproteobacteria0.271.07e-321.74e-31
orderDesulfovibrionales0.271.07e-321.74e-31
familyDesulfovibrionaceae0.271.07e-321.74e-31
genusCoprobacillus0.2643.28e-315.16e-30
genusButyrivibrio-0.2643.4e-315.18e-30
speciesEscherichia_unclassified0.262.23e-303.29e-29
speciesBilophila_wadsworthia0.2553.37e-294.82e-28
speciesCoprobacillus_unclassified0.2531.31e-281.82e-27
speciesAnaerotruncus_colihominis0.2457.35e-279.91e-26
speciesClostridium_asparagiforme0.2431.47e-261.93e-25
speciesClostridium_nexile0.2382.15e-252.74e-24
speciesClostridium_ramosum0.2315.23e-246.5e-23
familyFusobacteriaceae0.2231.43e-221.73e-21
genusBlautia0.2223.23e-223.75e-21
genusFusobacterium0.2213.26e-223.75e-21
phylumFusobacteria0.2172.32e-212.49e-20
classFusobacteriia0.2172.32e-212.49e-20
orderFusobacteriales0.2172.32e-212.49e-20
genusPhascolarctobacterium-0.2163.4e-213.49e-20
speciesPhascolarctobacterium_succinatutens-0.2163.4e-213.49e-20
speciesSutterella_wadsworthensis-0.2155.6e-215.62e-20
genusCitrobacter0.2131.25e-201.23e-19
speciesBifidobacterium_adolescentis-0.2122.31e-202.23e-19
speciesEggerthella_lenta0.2113.54e-203.34e-19
speciesKlebsiella_oxytoca0.2088.66e-208.01e-19
speciesCitrobacter_freundii0.2071.33e-191.21e-18
speciesLachnospiraceae_bacterium_8_1_57FAA-0.2036.97e-196.21e-18
speciesCitrobacter_unclassified0.2021.21e-181.06e-17
genusSutterella-0.2011.83e-181.57e-17
familyClostridiales_noname0.1984.76e-184.01e-17
speciesMitsuokella_unclassified-0.1978.59e-187.11e-17
genusClostridiales_noname0.1942.44e-171.99e-16
speciesEubacterium_rectale-0.191.15e-169.2e-16
genusMegamonas0.1891.51e-161.19e-15
speciesMegamonas_unclassified0.1891.55e-161.2e-15
genusMitsuokella-0.1882.86e-162.18e-15
speciesButyrivibrio_crossotus-0.1873.93e-162.94e-15
speciesFusobacterium_ulcerans0.1865.6e-164.13e-15
speciesLachnospiraceae_bacterium_1_4_56FAA0.1857.75e-165.63e-15
speciesSubdoligranulum_unclassified-0.1841.05e-157.51e-15
speciesEubacterium_siraeum-0.1812.98e-152.1e-14
speciesClostridium_clostridioforme0.184.9e-153.4e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1796.75e-154.62e-14
genusHoldemania0.1734.51e-143.04e-13
genusSubdoligranulum-0.1734.69e-143.12e-13
speciesAnaerotruncus_unclassified-0.1734.81e-143.15e-13
familyAcidaminococcaceae-0.1726.98e-144.51e-13
speciesFusobacterium_varium0.1719.76e-146.23e-13
speciesC2likevirus_unclassified-0.1711.07e-136.73e-13
genusC2likevirus-0.171.55e-139.63e-13
genusCoprococcus-0.1674.03e-132.47e-12
speciesBacteroides_oleiciplenus0.1664.56e-132.76e-12
speciesBacteroides_nordii0.1641e-125.97e-12
speciesBacteroides_stercoris0.1631.19e-127.02e-12
speciesBacteroides_thetaiotaomicron0.163.28e-121.91e-11
speciesKlebsiella_unclassified0.163.44e-121.98e-11
speciesMethanobrevibacter_smithii-0.1594.52e-122.57e-11
speciesLachnospiraceae_bacterium_5_1_57FAA0.1577.6e-124.27e-11
genusCatenibacterium-0.1578.02e-124.4e-11
speciesCatenibacterium_mitsuokai-0.1578.02e-124.4e-11
speciesParabacteroides_goldsteinii0.1561.33e-117.22e-11
familyLeuconostocaceae0.1542.02e-111.08e-10
speciesWeissella_confusa0.1542.44e-111.29e-10
genusDialister-0.1533.31e-111.74e-10
classNegativicutes-0.1523.74e-111.92e-10
orderSelenomonadales-0.1523.74e-111.92e-10
speciesBacteroides_intestinalis0.1524.17e-112.12e-10
genusWeissella0.1514.99e-112.51e-10
speciesButyrivibrio_unclassified-0.1515.3e-112.63e-10
speciesAnaerostipes_unclassified0.1515.62e-112.76e-10
speciesLachnospiraceae_bacterium_1_1_57FAA0.1515.8e-112.82e-10
classMethanobacteria-0.1498.34e-113.94e-10
orderMethanobacteriales-0.1498.34e-113.94e-10
familyMethanobacteriaceae-0.1498.34e-113.94e-10
speciesDorea_longicatena-0.1498.63e-114.03e-10
phylumEuryarchaeota-0.1499.92e-114.59e-10
genusMethanobrevibacter-0.1471.56e-107.15e-10
speciesBacteroides_fragilis0.1471.7e-107.72e-10
speciesCoprococcus_sp_ART55_1-0.1462.37e-101.07e-09
speciesBacteroides_salyersiae0.1462.49e-101.11e-09
familySutterellaceae-0.1443.63e-101.6e-09
genusGordonibacter0.1443.86e-101.67e-09
speciesGordonibacter_pamelaeae0.1443.86e-101.67e-09
speciesOlsenella_unclassified-0.1426.48e-102.78e-09
speciesBlautia_producta0.1426.68e-102.84e-09
speciesCoprococcus_comes-0.1419.77e-104.12e-09
speciesMegamonas_hypermegale0.1411.02e-094.26e-09
speciesFusobacterium_mortiferum0.1391.49e-096.17e-09
speciesBacteroides_sp_3_1_190.1391.53e-096.28e-09
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1391.66e-096.75e-09
speciesEubacterium_biforme-0.1382.21e-098.92e-09
speciesMegamonas_rupellensis0.1372.63e-091.05e-08
speciesWeissella_cibaria0.1373.08e-091.22e-08
speciesLactobacillus_ruminis-0.1363.14e-091.24e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.1363.23e-091.26e-08
classBetaproteobacteria-0.1354.06e-091.57e-08
genusEnterococcus0.1354.74e-091.81e-08
orderBurkholderiales-0.1354.75e-091.81e-08
familyEnterococcaceae0.1346.36e-092.4e-08
speciesKlebsiella_sp_MS_92_30.1346.59e-092.47e-08
speciesDialister_invisus-0.1337.62e-092.83e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1329.07e-093.34e-08
phylumFirmicutes-0.1329.48e-093.47e-08
genusBarnesiella-0.131.51e-085.44e-08
speciesBarnesiella_intestinihominis-0.131.51e-085.44e-08
genusLachnospiraceae_noname0.131.54e-085.51e-08
speciesCoprococcus_catus-0.131.71e-086.07e-08
speciesRuminococcus_torques0.131.88e-086.62e-08
speciesEnterobacter_aerogenes0.1282.69e-089.41e-08
genusOlsenella-0.1273.54e-081.23e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1264.53e-081.56e-07
speciesSubdoligranulum_sp_4_3_54A2FAA0.1255.78e-081.98e-07
genusPyramidobacter0.1238.47e-082.86e-07
speciesPyramidobacter_piscolens0.1238.47e-082.86e-07
speciesBacteroides_pectinophilus-0.1231.01e-073.38e-07
speciesBacteroides_xylanisolvens0.1221.11e-073.69e-07
familyRuminococcaceae-0.1221.25e-074.13e-07
familySiphoviridae-0.1211.51e-074.95e-07
phylumSynergistetes0.1211.63e-075.2e-07
classSynergistia0.1211.63e-075.2e-07
orderSynergistales0.1211.63e-075.2e-07
familySynergistaceae0.1211.63e-075.2e-07
speciesStreptococcus_anginosus0.121.89e-075.98e-07
speciesEubacterium_limosum0.121.9e-075.98e-07
speciesEubacterium_ramulus-0.1192.37e-077.41e-07
genusEubacterium-0.1192.44e-077.58e-07
familyEubacteriaceae-0.1192.54e-077.84e-07
speciesCoprococcus_eutactus-0.1165.01e-071.54e-06
speciesLactococcus_garvieae0.1165.19e-071.58e-06
speciesRuminococcus_champanellensis-0.1155.59e-071.66e-06
familyBacteroidales_noname-0.1155.6e-071.66e-06
genusBacteroidales_noname-0.1155.6e-071.66e-06
speciesBacteroidales_bacterium_ph8-0.1155.6e-071.66e-06
genusPseudoflavonifractor-0.1155.92e-071.74e-06
speciesPseudoflavonifractor_capillosus-0.1155.92e-071.74e-06
speciesBifidobacterium_pseudocatenulatum0.1121.12e-063.26e-06
familyBacillales_noname0.1092.22e-066.39e-06
genusGemella0.1092.22e-066.39e-06
genusSolobacterium0.1092.42e-066.88e-06
speciesSolobacterium_moorei0.1092.42e-066.88e-06
speciesRoseburia_intestinalis-0.1082.59e-067.3e-06
speciesMegamonas_funiformis0.1082.6e-067.3e-06
speciesCollinsella_tanakaei0.1073.67e-061.02e-05
speciesMethanobrevibacter_unclassified-0.1064.63e-061.29e-05
speciesStreptococcus_infantarius0.1055.33e-061.47e-05
speciesCollinsella_aerofaciens-0.1055.56e-061.53e-05
speciesLactobacillus_salivarius0.1046.75e-061.84e-05
speciesLeuconostoc_lactis0.1038.02e-062.18e-05
speciesEnterococcus_faecalis0.1038.9e-062.4e-05
speciesOdoribacter_unclassified-0.1029.73e-062.61e-05
speciesStreptococcus_australis0.1011.13e-053.01e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.11.41e-053.74e-05
genusDorea-0.11.47e-053.88e-05
speciesClostridium_sp_ATCC_BAA_4420.11.49e-053.91e-05
classClostridia-0.11.61e-054.18e-05
orderClostridiales-0.11.61e-054.18e-05
familyMyoviridae0.0991.96e-055.06e-05
familyBacteroidaceae0.0972.49e-056.35e-05
genusBacteroides0.0972.49e-056.35e-05
speciesHoldemania_filiformis0.0972.69e-056.83e-05
speciesBacteroides_clarus0.0972.83e-057.14e-05
genusMorganella0.0963.3e-058.24e-05
speciesMorganella_morganii0.0963.3e-058.24e-05
speciesLactobacillus_sanfranciscensis0.0953.77e-059.37e-05
speciesPeptostreptococcaceae_noname_unclassified-0.0944.62e-050.000114
speciesAlistipes_sp_HGB5-0.0944.95e-050.000122
orderBacillales0.0926.52e-050.000159
familyStreptococcaceae0.0927.28e-050.000177
speciesStreptococcus_salivarius0.098.9e-050.000215
orderCaudovirales-0.099.29e-050.000224
speciesOscillibacter_sp_KLE_1728-0.090.0001030.000247
genusProteus0.0880.0001370.000327
orderLactobacillales0.0880.0001420.000335
speciesBacteroides_plebeius0.0880.0001420.000335
speciesTuricibacter_unclassified-0.0880.0001430.000336
speciesLactobacillus_plantarum0.0870.0001590.000372
speciesRuminococcus_lactaris-0.0870.0001740.000405
classBacilli0.0870.0001780.000412
genusStreptococcus0.0870.0001790.000412
speciesErysipelotrichaceae_bacterium_2_2_44A0.0860.0002110.000483
speciesParaprevotella_xylaniphila-0.0850.000230.000524
genusTuricibacter-0.0840.0002610.000592
speciesRoseburia_hominis-0.0840.0002890.000653
speciesBifidobacterium_angulatum-0.0840.0002950.000663
genusOdoribacter-0.0830.0003130.0007
speciesBacteroides_finegoldii0.0830.0003220.000717
genusLeuconostoc0.0830.0003360.000745
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0830.0003430.000757
speciesAlistipes_senegalensis-0.0820.0003840.000843
speciesAnaerostipes_hadrus-0.0820.000410.000896
speciesEnterobacteria_phage_HK5440.0810.0004250.000924
genusFaecalibacterium-0.0810.0004330.000933
speciesFaecalibacterium_prausnitzii-0.0810.0004330.000933
speciesOdoribacter_splanchnicus-0.080.0005050.00108
speciesParabacteroides_sp_D13-0.080.0005230.00112
speciesClostridium_sp_L2_50-0.0790.0006070.00129
speciesLactococcus_phage_936_sensu_lato-0.0790.0006490.00137
speciesClostridium_perfringens0.0780.0006980.00147
speciesMitsuokella_multacida-0.0770.0008280.00174
phylumViruses_noname-0.0770.0008430.00175
classViruses_noname-0.0770.0008430.00175
speciesBifidobacterium_catenulatum-0.0770.0009290.00192
speciesBacteroides_salanitronis-0.0760.0009420.00194
genusCollinsella-0.0760.0009850.00202
speciesErysipelotrichaceae_bacterium_6_1_450.0760.0009950.00203
genusParaprevotella-0.0760.0010.00203
speciesStreptococcus_lutetiensis0.0760.001040.00211
speciesEubacterium_dolichum0.0750.001120.00226
genusCoriobacteriaceae_noname0.0750.001130.00227
speciesCoriobacteriaceae_bacterium_phI0.0750.001230.00246
speciesAlistipes_unclassified-0.0750.001260.00251
speciesParaprevotella_unclassified-0.0740.001340.00266
familyClostridiales_Family_XI_Incertae_Sedis0.0740.001420.00279
speciesProteus_mirabilis0.0740.001420.00279
genusClostridiaceae_noname0.0740.001430.00279
speciesClostridiaceae_bacterium_JC1180.0740.001430.00279
speciesBacteroides_eggerthii0.0730.001490.00289
speciesParabacteroides_johnsonii0.0730.001520.00294
speciesEubacterium_sp_3_1_310.0730.001670.00322
genusTunalikevirus0.0720.00180.00344
speciesStreptococcus_pasteurianus0.0720.00180.00344
speciesEnterococcus_faecium0.0720.001940.00369
familyActinomycetaceae0.0710.001990.00377
genusMethanosphaera-0.070.002520.00474
speciesMethanosphaera_stadtmanae-0.070.002520.00474
genusAdlercreutzia0.070.00260.00476
speciesAdlercreutzia_equolifaciens0.070.00260.00476
phylumVerrucomicrobia-0.070.002610.00476
classVerrucomicrobiae-0.070.002610.00476
orderVerrucomicrobiales-0.070.002610.00476
familyVerrucomicrobiaceae-0.070.002610.00476
genusAkkermansia-0.070.002610.00476
speciesAkkermansia_muciniphila-0.070.002610.00476
orderPasteurellales-0.0690.002910.00526
familyPasteurellaceae-0.0690.002910.00526
genusCoprobacter-0.0690.003010.0054
speciesCoprobacter_fastidiosus-0.0690.003010.0054
speciesRoseburia_unclassified-0.0690.003030.00542
speciesBacteroides_caccae0.0680.00320.0057
speciesHaemophilus_parainfluenzae-0.0680.003420.00607
genusHaemophilus-0.0680.003440.00608
genusSiphoviridae_noname-0.0670.003530.00622
genusButyricimonas0.0670.003690.00645
speciesButyricimonas_synergistica0.0670.003690.00645
genusActinomyces0.0670.00380.00662
genusRuminococcaceae_noname-0.0650.004710.00814
speciesRuminococcaceae_bacterium_D16-0.0650.004710.00814
speciesFusobacterium_nucleatum0.0650.004730.00815
speciesStreptococcus_sanguinis0.0650.004780.0082
speciesMegasphaera_micronuciformis0.0650.004950.00847
speciesKlebsiella_phage_KP360.0640.005390.00918
speciesEggerthella_sp_1_3_56FAA0.0640.005950.0101
speciesStreptococcus_thermophilus-0.0630.006180.0105
speciesBacteroides_barnesiae-0.0620.007370.0124
speciesErysipelotrichaceae_bacterium_3_1_530.0610.008120.0136
genusRoseburia-0.0610.008350.014
speciesCollinsella_intestinalis0.0610.008560.0143
speciesCoprobacillus_sp_29_10.0610.008760.0146
speciesBacteroides_massiliensis0.0590.01030.0171
speciesHoldemania_sp_AP20.0590.01060.0175
genusAcidaminococcaceae_unclassified-0.0590.01110.0183
orderViruses_noname-0.0580.01180.0193
speciesEubacterium_eligens-0.0580.01220.0199
speciesBacteroides_cellulosilyticus0.0570.01310.0213
speciesTuricibacter_sanguinis-0.0570.01320.0214
orderCoriobacteriales0.0570.01390.0224
familyCoriobacteriaceae0.0570.01390.0224
genusMyoviridae_noname0.0560.01510.0242
speciesBifidobacterium_dentium0.0560.01590.0254
genusBifidobacterium-0.0550.0180.0287
speciesLactobacillus_amylovorus0.0540.0190.0302
speciesHoldemania_unclassified0.0540.02010.0318
speciesRoseburia_inulinivorans-0.0530.02120.0335
familyPropionibacteriaceae-0.0530.02220.0349
orderBifidobacteriales-0.0520.02380.0372
familyBifidobacteriaceae-0.0520.02380.0372
genusSutterellaceae_unclassified-0.0520.02570.04
genusButyricicoccus0.0510.02610.0404
speciesButyricicoccus_pullicaecorum0.0510.02610.0404
speciesParaprevotella_clara-0.0510.02620.0404
speciesCoprobacillus_sp_D60.0510.02630.0404
genusLambdalikevirus0.0510.0280.0429
genusPeptostreptococcus0.050.03110.0475
speciesLactococcus_phage_bIL67-0.0490.03330.0507
speciesLactococcus_phage_phi7-0.0490.03380.0513
speciesClostridium_bartlettii0.0490.03450.0522
speciesSutterella_parvirubra0.0490.03530.0532
familyVeillonellaceae-0.0490.03570.0537
classErysipelotrichia0.0480.03660.0545
orderErysipelotrichales0.0480.03660.0545
familyErysipelotrichaceae0.0480.03660.0545
speciesBacteroides_dorei-0.0480.03810.0566
familyPrevotellaceae-0.0480.03950.0584
speciesLactobacillus_oris0.0480.03970.0586
speciesPorphyromonas_uenonis0.0470.04030.0593
genusPeptoniphilus0.0470.04260.0624
speciesParabacteroides_distasonis0.0460.04770.0697
speciesBifidobacterium_longum-0.0460.04860.0708
speciesDialister_succinatiphilus-0.0450.05160.0749
speciesAcidaminococcus_fermentans0.0440.05510.0798
speciesGemella_morbillorum0.0440.05570.0804
speciesPeptostreptococcus_stomatis0.0440.05870.0845
speciesPrevotella_bivia0.0430.06050.0868
speciesLactococcus_phage_P680-0.0430.06190.0885
orderActinomycetales0.0430.06480.0924
speciesDorea_formicigenerans-0.0420.06670.0948
speciesLactobacillus_gasseri0.0420.06850.0971
speciesBacteroides_faecis0.0410.07710.109
speciesEubacterium_cylindroides-0.0410.07760.109
speciesBacteroides_ovatus0.0410.0790.111
speciesBacteroides_uniformis-0.040.08080.113
genusMegasphaera0.040.08620.12
speciesPeptostreptococcus_anaerobius0.0390.09020.126
speciesAlistipes_shahii-0.0390.09140.127
speciesBacteroides_coprocola0.0390.09170.127
speciesClostridium_leptum-0.0390.09510.131
speciesClostridium_sp_KLE_17550.0380.09830.135
speciesLactobacillus_fermentum0.0380.0990.136
speciesRothia_mucilaginosa0.0380.10.136
speciesLactococcus_phage_jm2-0.0380.10.136
speciesLactobacillus_vaginalis0.0380.1010.137
genusParvimonas0.0380.1050.142
speciesParvimonas_unclassified0.0370.1050.142
speciesEubacterium_ventriosum-0.0380.1050.142
speciesAcidaminococcus_unclassified-0.0370.1070.144
speciesLactobacillus_mucosae0.0370.1140.153
genusSuccinatimonas-0.0360.1170.156
speciesSuccinatimonas_hippei-0.0360.1170.156
speciesVeillonella_parvula0.0360.1170.156
familySuccinivibrionaceae-0.0350.1280.169
familyMicrococcaceae0.0350.1280.169
speciesDorea_unclassified-0.0350.130.171
genusRothia0.0350.1320.174
speciesStreptococcus_vestibularis0.0350.1350.177
speciesStreptococcus_mitis_oralis_pneumoniae0.0340.140.183
familyPorphyromonadaceae-0.0340.1430.186
speciesLactobacillus_crispatus0.0330.1480.192
familyPeptostreptococcaceae0.0330.1520.197
speciesBacteroides_sp_1_1_6-0.0330.1590.206
familyLachnospiraceae-0.0310.1750.225
speciesEubacterium_hallii-0.0310.1750.225
genusAnaerotruncus-0.0310.1840.236
speciesAcidaminococcus_intestini0.0310.1860.238
speciesAlistipes_finegoldii-0.030.1910.244
familyPodoviridae-0.030.1990.253
genusActinobacillus-0.0290.2120.268
speciesActinobacillus_unclassified-0.0290.2120.268
speciesPrevotella_buccae0.0290.2130.269
speciesOscillibacter_unclassified0.0280.2180.274
speciesParabacteroides_merdae-0.0270.2450.308
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0270.2470.309
familyOscillospiraceae0.0260.2530.315
genusOscillibacter0.0260.2530.315
speciesLactobacillus_acidophilus-0.0260.2610.324
familyRikenellaceae-0.0250.2760.341
genusAlistipes-0.0250.2760.341
speciesBlautia_hydrogenotrophica0.0250.2820.348
genusPeptostreptococcaceae_noname0.0240.2960.364
speciesBifidobacterium_bifidum-0.0230.3180.39
genusDesulfovibrio0.0220.3390.415
speciesStreptococcus_gordonii0.0220.340.415
speciesAlistipes_sp_AP11-0.0210.3610.439
genusLactococcus0.0210.3750.455
speciesOdoribacter_laneus0.020.3850.466
speciesAlistipes_putredinis-0.020.3940.476
genusPorphyromonas0.0190.3990.48
genusParasutterella-0.0190.4030.483
speciesParasutterella_excrementihominis-0.0190.4030.483
familyViruses_noname0.0190.4070.485
genusViruses_noname0.0190.4070.485
speciesBifidobacterium_animalis-0.0190.410.487
genusVeillonella0.0190.4210.499
speciesMegasphaera_unclassified0.0180.4270.505
speciesPropionibacterium_freudenreichii0.0180.4370.514
speciesBacteroides_fluxus0.0180.4380.514
speciesPorphyromonas_asaccharolytica0.0180.4380.514
speciesRuminococcus_obeum0.0170.4520.529
speciesRuminococcus_sp_JC3040.0170.460.537
speciesBacteroides_sp_4_3_47FAA0.0170.4610.537
speciesClostridium_spiroforme0.0170.4730.55
genusParabacteroides0.0160.4830.56
familyOxalobacteraceae-0.0160.4910.568
speciesLactobacillus_casei_paracasei0.0160.4920.568
orderPseudomonadales0.0160.4950.57
speciesParabacteroides_sp_20_3-0.0160.5010.575
speciesAlistipes_onderdonkii-0.0150.5050.579
familyStaphylococcaceae0.0150.530.606
speciesAlistipes_indistinctus0.0140.5340.609
speciesHaemophilus_paraphrohaemolyticus0.0140.5480.623
speciesRuminococcus_sp_5_1_39BFAA0.0140.5590.633
genusOxalobacter-0.0130.5610.633
speciesOxalobacter_formigenes-0.0130.5610.633
speciesSlackia_piriformis-0.0130.5650.636
speciesErysipelotrichaceae_bacterium_21_30.0130.5680.638
speciesParabacteroides_unclassified0.0120.6020.675
speciesCollinsella_unclassified0.0120.6150.688
speciesPrevotella_stercorea0.0110.6270.7
genusPropionibacterium-0.0110.6340.705
speciesAggregatibacter_segnis0.0110.6350.705
speciesStreptococcus_parasanguinis-0.0110.6420.711
speciesLachnospiraceae_bacterium_5_1_63FAA0.0110.6430.711
genusAggregatibacter0.010.6510.718
speciesDesulfovibrio_piger-0.010.6550.721
genusLactobacillus0.010.6630.728
familyLactobacillaceae0.010.6670.729
genusAnaerostipes-0.010.6670.729
speciesVeillonella_atypica-0.010.6760.737
speciesCampylobacter_concisus-0.0090.6840.744
speciesHaemophilus_sputorum-0.0090.6880.745
speciesBacteroides_vulgatus-0.0090.6880.745
speciesBacteroides_coprophilus-0.0090.6910.746
speciesBacteroides_sp_2_1_22-0.0090.6940.748
speciesPrevotella_copri0.0090.7070.76
classEpsilonproteobacteria-0.0080.7240.775
orderCampylobacterales-0.0080.7240.775
speciesLactobacillus_reuteri0.0080.7330.783
speciesLactobacillus_delbrueckii0.0070.7590.809
speciesVeillonella_unclassified-0.0070.7680.816
speciesRuminococcus_bromii-0.0070.7740.821
speciesStreptococcus_phage_Sfi21-0.0060.7860.832
genusStaphylococcus0.0060.80.845
speciesRuminococcus_callidus0.0060.8040.846
phylumBacteroidetes-0.0060.8070.846
classBacteroidia-0.0060.8080.846
orderBacteroidales-0.0060.8080.846
genusAcidaminococcus0.0060.810.846
speciesLactococcus_lactis-0.0050.8150.849
speciesStreptococcus_mutans0.0050.830.863
genusErysipelotrichaceae_noname0.0050.8340.865
genusRuminococcus0.0050.8360.865
orderAeromonadales0.0040.8480.876
speciesDesulfovibrio_desulfuricans-0.0040.8670.894
speciesMegasphaera_elsdenii0.0040.8690.894
genusSlackia0.0030.9010.925
genusCampylobacter0.0030.9140.936
genusPrevotella-0.0020.9360.956
phylumActinobacteria-0.0020.9460.958
classActinobacteria-0.0020.9460.958
speciesOscillibacter_sp_KLE_17450.0020.9460.958
familyBurkholderiales_noname0.0020.9480.958
genusBurkholderiales_noname0.0010.950.958
speciesBurkholderiales_bacterium_1_1_470.0010.950.958
familyCampylobacteraceae-0.0010.9530.959
speciesLactobacillus_rhamnosus0.0010.9610.965
speciesBifidobacterium_breve0.0010.9680.97
speciesVeillonella_dispar-0.0010.980.98
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.01010636125820.007711706163957.47717911386e-0516835.51677
Type II diabetesChina1831850.03504500146690.02568457216150.0144289357275423513.9958
Crohns diseaseSpain17660.02963246958090.01055688490740.0159924980762896629.8121
ObesityDenmark1691230.008878224953830.008890854806610.2423506861811261641.485
Type II diabetesSweden53920.01215299770150.01397277301890.284865101936982733.278
Colorectal cancerAustria64350.03574908793560.02161979028760.4400072729621594153.9349
Liver cirrhosisChina1201140.02749096988650.01583558759580.8944605584452848795.6935
Rheumatoid arthritisChina127980.02583931262090.02648660903770.9547039030762889696.3618
Ulcerative colitisSpain78660.009620371864750.01055688490740.9884618330193009499.2743
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382