MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-06 14:50:25 PST
Job id & description: 1614, test
Query type: protein
Count queries & homologs: 1, 16
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
XYn1041897CompleteK01181COG3693FirmicutesRoseburia100.097.9499.47
XYn1040638CompleteK01181COG3693FirmicutesRoseburia100.097.9597.84
XYn1040043CompleteK01181COG3693unknownunknown79.4476.9573.56
XYn1040681CompleteK01181COG3693unknownunknown79.1476.8371.7
XYn1041708CompleteK01181COG3693unknownunknown79.4477.8470.07
XYn1041931CompleteK01181COG3693unknownunknown79.4477.865.98
XYn1040339CompleteK01181COG3693unknownunknown79.4476.9565.88
XYn1042076CompleteK01181COG3693unknownunknown79.4477.7964.72
XYn1038518CompleteK01181COG3693unknownunknown79.4476.0164.0
XYn1041203Lack 3'-endK01181COG3693unknownunknown79.1477.6462.99
XYn1039851CompleteK01181COG3693unknownunknown79.1476.9863.31
XYn1035886CompleteK01181COG3693unknownunknown79.4475.1460.24
XYn1040185CompleteK01181COG3693unknownunknown79.4477.4260.59
XYn1038800CompleteK01181COG3693unknownunknown79.4476.860.17
XYn1034714CompleteK01181COG3693unknownunknown79.4474.5160.24
XYn1057976CompleteK01181COG3693unknownunknown72.8277.5145.43
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRoseburia_intestinalis0.5842.17e-1711.02e-168
genusRoseburia0.5147.13e-1271.68e-124
familyLachnospiraceae0.3641.1e-591.73e-57
speciesRoseburia_inulinivorans0.3322.65e-493.13e-47
genusFaecalibacterium0.3221.74e-461.37e-44
speciesFaecalibacterium_prausnitzii0.3221.74e-461.37e-44
classClostridia0.2781.81e-341.07e-32
orderClostridiales0.2781.81e-341.07e-32
phylumFirmicutes0.2723.71e-331.95e-31
genusPeptostreptococcaceae_noname0.2061.98e-199.35e-18
familyPeptostreptococcaceae0.1994.22e-181.81e-16
genusRuminococcus0.1961.07e-174.21e-16
familyRuminococcaceae0.1918.11e-172.94e-15
speciesRuminococcus_sp_5_1_39BFAA0.1918.74e-172.95e-15
classBacteroidia-0.1873.78e-161.06e-14
orderBacteroidales-0.1873.78e-161.06e-14
phylumBacteroidetes-0.1873.8e-161.06e-14
speciesLachnospiraceae_bacterium_5_1_63FAA0.1865.23e-161.37e-14
speciesEubacterium_hallii0.1797.17e-151.78e-13
speciesAnaerostipes_hadrus0.1771.17e-142.76e-13
speciesDorea_formicigenerans0.1743.65e-147.94e-13
speciesEubacterium_ventriosum0.1743.7e-147.94e-13
genusCoprococcus0.1734.38e-148.99e-13
speciesClostridium_bartlettii0.1735.08e-149.99e-13
genusDorea0.1665.83e-131.1e-11
genusEubacterium0.1594.74e-128.6e-11
familyEubacteriaceae0.1595.1e-128.92e-11
speciesEubacterium_ramulus0.1587.04e-121.17e-10
speciesRuminococcus_obeum0.1587.16e-121.17e-10
speciesVeillonella_parvula0.1561.32e-112.06e-10
speciesStreptococcus_salivarius0.1561.35e-112.06e-10
genusVeillonella0.1541.95e-112.88e-10
speciesRuminococcus_bromii0.1481.15e-101.64e-09
speciesDorea_longicatena0.1471.6e-102.22e-09
genusLachnospiraceae_noname0.1471.82e-102.45e-09
speciesVeillonella_unclassified0.1462.49e-103.26e-09
familyVeillonellaceae0.1435.21e-106.65e-09
classBacilli0.1411.01e-091.25e-08
orderLactobacillales0.141.16e-091.4e-08
orderBifidobacteriales0.1391.61e-091.85e-08
familyBifidobacteriaceae0.1391.61e-091.85e-08
genusTuricibacter0.1391.79e-092.01e-08
genusBifidobacterium0.1381.83e-092.01e-08
speciesEubacterium_rectale0.1372.74e-092.94e-08
speciesHaemophilus_parainfluenzae0.1372.83e-092.97e-08
genusHaemophilus0.1363.45e-093.51e-08
genusAnaerostipes0.1363.5e-093.51e-08
speciesBifidobacterium_adolescentis0.1363.71e-093.61e-08
speciesTuricibacter_unclassified0.1363.75e-093.61e-08
speciesCoprococcus_comes0.1355.23e-094.9e-08
familyStreptococcaceae0.1345.29e-094.9e-08
speciesCoprococcus_catus0.1345.6e-095.08e-08
orderPasteurellales0.1337.91e-096.91e-08
familyPasteurellaceae0.1337.91e-096.91e-08
speciesVeillonella_atypica0.131.64e-081.41e-07
genusPrevotella-0.1292.24e-081.89e-07
genusStreptococcus0.1292.38e-081.97e-07
speciesStreptococcus_parasanguinis0.1282.59e-082.11e-07
phylumActinobacteria0.1273.47e-082.73e-07
classActinobacteria0.1273.47e-082.73e-07
speciesSubdoligranulum_sp_4_3_54A2FAA-0.1273.77e-082.92e-07
speciesPrevotella_copri-0.1255.56e-084.23e-07
genusActinobacillus0.1211.62e-071.18e-06
speciesActinobacillus_unclassified0.1211.62e-071.18e-06
genusDialister0.1211.63e-071.18e-06
speciesBifidobacterium_longum0.1211.67e-071.19e-06
speciesTuricibacter_sanguinis0.1211.71e-071.2e-06
speciesRuminococcus_callidus0.121.82e-071.26e-06
speciesPeptostreptococcaceae_noname_unclassified0.122.05e-071.4e-06
speciesEubacterium_eligens0.1182.79e-071.88e-06
classNegativicutes0.1174.17e-072.73e-06
orderSelenomonadales0.1174.17e-072.73e-06
speciesLachnospiraceae_bacterium_1_1_57FAA0.1156.56e-074.24e-06
genusBlautia0.1148.53e-075.44e-06
familyPorphyromonadaceae-0.1111.37e-068.62e-06
speciesButyrivibrio_unclassified0.1092.48e-061.54e-05
speciesParabacteroides_goldsteinii-0.1082.95e-061.81e-05
speciesDialister_invisus0.1073.89e-062.35e-05
speciesStreptococcus_australis0.1064.36e-062.6e-05
genusAdlercreutzia0.1064.56e-062.66e-05
speciesAdlercreutzia_equolifaciens0.1064.56e-062.66e-05
speciesLachnospiraceae_bacterium_3_1_46FAA0.1046.9e-063.97e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.1011.32e-057.51e-05
speciesCitrobacter_unclassified0.0991.67e-059.38e-05
speciesRuminococcus_torques0.0991.76e-059.77e-05
speciesVeillonella_dispar0.0991.9e-050.000104
speciesRuminococcus_lactaris0.0982.23e-050.000121
speciesAlistipes_indistinctus-0.0972.56e-050.000137
genusCitrobacter0.0972.89e-050.000153
speciesDorea_unclassified-0.0963.4e-050.000178
speciesClostridium_perfringens0.0944.81e-050.000244
genusParabacteroides-0.0944.83e-050.000244
genusButyricimonas-0.0944.86e-050.000244
speciesButyricimonas_synergistica-0.0944.86e-050.000244
speciesHaemophilus_sputorum0.0936.15e-050.000306
orderCoriobacteriales0.0926.62e-050.000322
familyCoriobacteriaceae0.0926.62e-050.000322
genusEnterobacter0.0926.91e-050.000333
speciesEnterobacter_cloacae0.0917.97e-050.00038
familyPrevotellaceae-0.0880.0001520.00071
speciesDesulfovibrio_piger-0.0870.0001520.00071
genusDesulfovibrio-0.0850.0002280.00106
genusParasutterella0.0840.0002690.00122
speciesParasutterella_excrementihominis0.0840.0002690.00122
speciesCitrobacter_freundii0.0840.0002970.00134
genusRuminococcaceae_noname0.0830.0003470.00152
speciesRuminococcaceae_bacterium_D160.0830.0003470.00152
speciesRoseburia_hominis0.0830.0003470.00152
speciesOdoribacter_splanchnicus-0.080.0005090.0022
speciesAlistipes_shahii-0.0790.000620.00266
genusButyrivibrio0.0790.0006310.00268
speciesOdoribacter_unclassified0.0790.0006640.00279
speciesCoprobacillus_sp_29_1-0.0790.0006680.00279
speciesLachnospiraceae_bacterium_1_4_56FAA0.0780.0007420.00307
genusOdoribacter-0.0780.0007760.00318
speciesCoprococcus_sp_ART55_10.0760.001050.00427
familyRikenellaceae-0.0760.001080.00432
genusAlistipes-0.0760.001080.00432
speciesClostridium_hathewayi-0.0740.00140.00555
speciesStreptococcus_sanguinis0.0730.001540.00606
classBetaproteobacteria0.0730.001590.0062
speciesLactobacillus_ruminis0.0720.001840.00712
familySutterellaceae0.0710.001980.0076
speciesBacteroides_nordii-0.0710.002030.00773
speciesWeissella_confusa0.0710.002170.00819
genusSlackia-0.070.002370.00881
speciesKlebsiella_oxytoca0.070.002370.00881
speciesBacteroides_finegoldii-0.0690.002840.0105
genusBurkholderiales_noname0.0690.002960.0107
speciesBurkholderiales_bacterium_1_1_470.0690.002960.0107
orderBurkholderiales0.0690.002980.0107
speciesBacteroides_thetaiotaomicron-0.0680.003340.0119
speciesCollinsella_aerofaciens0.0670.003920.0139
familyBurkholderiales_noname0.0660.004030.0142
speciesStreptococcus_mitis_oralis_pneumoniae0.0650.005110.0179
familyLeuconostocaceae0.0640.005880.0204
speciesStreptococcus_thermophilus0.0640.005930.0204
speciesRuminococcus_gnavus0.0630.006590.0222
classDeltaproteobacteria-0.0630.006620.0222
orderDesulfovibrionales-0.0630.006620.0222
familyDesulfovibrionaceae-0.0630.006620.0222
speciesBacteroides_oleiciplenus-0.0620.006880.0229
genusAggregatibacter0.0620.007540.0249
speciesClostridiales_bacterium_1_7_47FAA-0.0610.007860.0257
speciesBifidobacterium_bifidum0.0610.007910.0257
genusWeissella0.0610.007980.0258
orderBacillales0.0610.008460.0272
familyBacillales_noname0.0610.008580.0272
genusGemella0.0610.008580.0272
speciesKlebsiella_sp_MS_92_30.0610.008650.0272
speciesProteus_mirabilis0.060.009040.0282
speciesLactobacillus_sanfranciscensis0.060.009090.0282
speciesClostridium_sp_L2_500.0590.01110.0342
speciesBacteroides_intestinalis-0.0590.01130.0346
familyLactobacillaceae0.0580.01140.0347
genusPropionibacterium-0.0580.01230.0372
speciesBacteroides_dorei0.0570.01390.0418
speciesClostridium_symbiosum-0.0560.01560.0466
genusCollinsella0.0560.0160.0475
familyPropionibacteriaceae-0.0560.01610.0475
genusClostridiales_noname-0.0550.01640.0481
speciesClostridium_clostridioforme-0.0550.01710.0498
speciesBacteroides_salyersiae-0.0550.01810.0524
speciesLeuconostoc_lactis0.0540.01890.0544
genusPantoea-0.0540.01980.0563
speciesPantoea_unclassified-0.0540.01980.0563
speciesStreptococcus_vestibularis0.0540.02010.0568
genusCatenibacterium-0.0530.02170.0606
speciesCatenibacterium_mitsuokai-0.0530.02170.0606
speciesLactococcus_garvieae0.0530.02290.0627
phylumVerrucomicrobia-0.0520.02350.0627
classVerrucomicrobiae-0.0520.02350.0627
orderVerrucomicrobiales-0.0520.02350.0627
familyVerrucomicrobiaceae-0.0520.02350.0627
genusAkkermansia-0.0520.02350.0627
speciesSlackia_piriformis-0.0520.02350.0627
speciesAkkermansia_muciniphila-0.0520.02350.0627
genusMitsuokella0.0520.02550.0676
speciesKlebsiella_unclassified0.0510.02670.0704
genusProteus0.0510.02880.0755
speciesLachnospiraceae_bacterium_2_1_58FAA0.050.02910.0759
classMethanobacteria-0.050.03130.0798
orderMethanobacteriales-0.050.03130.0798
familyMethanobacteriaceae-0.050.03130.0798
genusMethanosphaera-0.050.03160.0798
speciesMethanosphaera_stadtmanae-0.050.03160.0798
familyPodoviridae0.050.03170.0798
genusLactobacillus0.050.03180.0798
speciesEnterobacter_aerogenes0.050.03210.0802
speciesBacteroides_caccae-0.0490.03350.083
speciesDialister_succinatiphilus0.0490.03360.083
genusCoprobacillus-0.0490.0340.0836
familyBacteroidales_noname0.0490.03480.0836
genusBacteroidales_noname0.0490.03480.0836
speciesLactobacillus_oris-0.0490.03480.0836
speciesBacteroidales_bacterium_ph80.0490.03480.0836
speciesParabacteroides_unclassified-0.0490.03490.0836
speciesBacteroides_stercoris-0.0490.03580.0853
speciesPrevotella_stercorea-0.0480.03770.0894
speciesMitsuokella_unclassified0.0480.03870.0913
speciesMegasphaera_elsdenii0.0480.0390.0916
speciesCampylobacter_concisus0.0470.04010.0937
speciesAggregatibacter_segnis0.0470.04060.0939
speciesSutterella_wadsworthensis0.0470.04060.0939
speciesMethanobrevibacter_unclassified-0.0470.04230.0974
speciesMitsuokella_multacida0.0470.04340.0994
speciesPropionibacterium_freudenreichii-0.0470.04380.0999
speciesBacteroides_clarus0.0460.04440.1
orderViruses_noname0.0460.04470.1
genusPseudoflavonifractor0.0460.04480.1
speciesPseudoflavonifractor_capillosus0.0460.04480.1
orderCaudovirales0.0460.0470.105
phylumViruses_noname0.0460.04840.107
classViruses_noname0.0460.04840.107
genusHoldemania0.0460.0490.108
genusLactococcus0.0450.05040.11
speciesCollinsella_unclassified-0.0450.05120.111
speciesParabacteroides_merdae-0.0450.05130.111
speciesEubacterium_cylindroides0.0450.05250.113
speciesStreptococcus_phage_Sfi210.0450.05420.116
speciesBifidobacterium_pseudocatenulatum0.0440.05470.117
speciesGemella_morbillorum0.0440.05640.119
speciesFusobacterium_mortiferum-0.0440.05640.119
genusMegasphaera0.0440.05650.119
genusMethanobrevibacter-0.0440.05650.119
genusKlebsiella0.0440.05820.122
genusPorphyromonas-0.0430.06050.126
speciesLactobacillus_rhamnosus-0.0430.06130.127
speciesEubacterium_limosum-0.0430.06220.128
speciesAlistipes_finegoldii-0.0430.06550.134
genusSiphoviridae_noname0.0420.06910.141
genusSutterella0.0420.06950.141
phylumEuryarchaeota-0.0420.07160.145
speciesBifidobacterium_catenulatum0.0420.07180.145
speciesEscherichia_coli-0.0420.07270.146
speciesBlautia_hydrogenotrophica0.0410.07520.15
genusSolobacterium0.0410.07870.156
speciesSolobacterium_moorei0.0410.07870.156
genusClostridiaceae_noname-0.040.08150.16
speciesClostridiaceae_bacterium_JC118-0.040.08150.16
speciesPorphyromonas_uenonis-0.0390.09170.179
speciesBacteroides_salanitronis0.0390.0920.179
speciesRoseburia_unclassified-0.0390.09430.182
speciesLactobacillus_fermentum-0.0390.09470.182
speciesHoldemania_filiformis0.0390.09470.182
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0380.1010.194
speciesStreptococcus_gordonii0.0370.1060.203
speciesMethanobrevibacter_smithii-0.0370.1090.207
speciesClostridium_bolteae-0.0370.1090.207
speciesAlistipes_senegalensis-0.0370.1120.211
speciesAnaerostipes_unclassified-0.0360.1170.22
speciesClostridium_nexile0.0360.1210.227
genusEscherichia-0.0360.1220.228
speciesOdoribacter_laneus-0.0350.1320.245
genusCoprobacter0.0350.1330.245
speciesCoprobacter_fastidiosus0.0350.1330.245
speciesMegasphaera_unclassified0.0350.1350.247
speciesSubdoligranulum_unclassified0.0350.1350.247
speciesBacteroides_sp_2_1_220.0340.1380.251
speciesHoldemania_sp_AP20.0340.1420.258
speciesWeissella_cibaria0.0340.1430.259
speciesEggerthella_lenta-0.0340.1450.261
speciesAnaerotruncus_colihominis-0.0330.1550.278
speciesAlistipes_onderdonkii-0.0320.160.286
speciesAcidaminococcus_intestini0.0320.1620.287
speciesLactobacillus_salivarius-0.0320.1620.287
speciesLactobacillus_plantarum0.0320.1630.288
speciesLactobacillus_reuteri0.0320.1650.289
speciesCoprococcus_eutactus0.0320.1650.289
speciesEggerthella_sp_1_3_56FAA-0.0320.1660.289
speciesRothia_mucilaginosa0.0320.1660.289
familyBacteroidaceae-0.0320.1690.292
genusBacteroides-0.0320.1690.292
speciesBlautia_producta0.0320.1720.295
speciesLachnospiraceae_bacterium_8_1_57FAA0.0320.1720.295
speciesCoprobacillus_sp_D6-0.0310.1770.303
genusPyramidobacter0.0310.180.305
speciesPyramidobacter_piscolens0.0310.180.305
speciesAlistipes_sp_HGB5-0.0310.180.305
genusLambdalikevirus0.0310.1840.31
speciesLachnospiraceae_bacterium_6_1_63FAA0.0310.1850.311
speciesStreptococcus_mutans0.030.1890.316
familyViruses_noname0.030.1940.322
genusViruses_noname0.030.1940.322
genusOxalobacter-0.030.1960.323
speciesOxalobacter_formigenes-0.030.1960.323
speciesBacteroides_uniformis0.030.1980.326
familyOxalobacteraceae-0.0290.2060.338
genusFusobacterium-0.0290.2080.339
speciesLactococcus_lactis0.0290.2080.339
familySiphoviridae0.0290.2090.339
speciesClostridium_sp_ATCC_BAA_442-0.0290.2140.346
genusLeuconostoc0.0280.2190.353
speciesStreptococcus_lutetiensis0.0270.2370.38
speciesFusobacterium_ulcerans-0.0270.2420.387
speciesEscherichia_unclassified0.0270.2470.394
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0270.2510.399
classGammaproteobacteria0.0260.2550.404
genusSubdoligranulum0.0260.2650.417
speciesParaprevotella_unclassified-0.0260.2650.417
speciesParabacteroides_sp_20_30.0260.2660.417
speciesBacteroides_sp_4_3_47FAA0.0260.2680.419
speciesAlistipes_putredinis-0.0250.2730.425
genusStaphylococcus0.0250.2760.429
familyStaphylococcaceae0.0250.2810.435
genusButyricicoccus0.0250.2830.435
speciesButyricicoccus_pullicaecorum0.0250.2830.435
phylumFusobacteria-0.0240.290.442
classFusobacteriia-0.0240.290.442
orderFusobacteriales-0.0240.290.442
genusParaprevotella-0.0240.2910.442
genusPeptoniphilus-0.0240.2930.442
speciesBilophila_unclassified-0.0240.2930.442
genusBilophila-0.0240.2940.442
speciesLactobacillus_amylovorus-0.0240.30.448
genusBarnesiella0.0240.3020.448
speciesMegamonas_funiformis-0.0240.3020.448
speciesBarnesiella_intestinihominis0.0240.3020.448
speciesMegasphaera_micronuciformis0.0240.3030.448
familyFusobacteriaceae-0.0240.3060.451
speciesPorphyromonas_asaccharolytica-0.0230.3120.459
familyMyoviridae0.0230.3140.46
genusAnaerotruncus-0.0230.3190.466
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0230.3220.469
speciesBacteroides_ovatus-0.0230.3270.475
speciesLachnospiraceae_bacterium_2_1_46FAA0.0230.3290.476
genusAcidaminococcaceae_unclassified0.0230.330.476
genusTunalikevirus0.0220.3310.476
speciesLactococcus_phage_936_sensu_lato0.0220.3320.476
speciesBacteroides_fragilis0.0220.340.486
speciesPrevotella_bivia0.0220.3430.489
speciesEnterococcus_faecalis0.0210.360.512
speciesBifidobacterium_angulatum0.0210.3660.519
speciesLactobacillus_mucosae-0.0210.3750.53
speciesEubacterium_biforme-0.020.3780.532
familyAcidaminococcaceae0.020.3790.532
speciesCoprobacillus_unclassified-0.020.3850.539
speciesKlebsiella_pneumoniae0.020.3860.539
speciesBacteroides_sp_1_1_6-0.020.3870.539
speciesBacteroides_vulgatus0.020.3880.539
speciesRuminococcus_sp_JC304-0.020.3950.547
speciesRuminococcus_champanellensis-0.020.3970.547
genusParvimonas-0.020.3980.547
speciesDesulfovibrio_desulfuricans-0.020.3990.547
speciesParvimonas_unclassified-0.0190.40.547
speciesEubacterium_siraeum0.0190.4010.547
speciesEnterobacteria_phage_HK5440.0190.4080.555
speciesHaemophilus_paraphrohaemolyticus0.0190.4180.56
speciesStreptococcus_anginosus0.0190.4180.56
phylumSynergistetes0.0190.4190.56
classSynergistia0.0190.4190.56
orderSynergistales0.0190.4190.56
familySynergistaceae0.0190.4190.56
speciesBacteroides_sp_3_1_19-0.0190.4210.561
genusPeptostreptococcus0.0180.4290.57
speciesErysipelotrichaceae_bacterium_3_1_530.0180.4320.573
familyClostridiales_noname-0.0180.4410.583
genusRothia0.0180.4460.586
speciesLachnospiraceae_bacterium_7_1_58FAA0.0180.4460.586
speciesBilophila_wadsworthia-0.0170.450.59
familyMicrococcaceae0.0170.4550.595
phylumProteobacteria0.0170.4590.596
genusMyoviridae_noname0.0170.460.596
speciesPrevotella_buccae-0.0170.4610.596
speciesEnterococcus_faecium-0.0170.4610.596
speciesLactococcus_phage_P6800.0170.4640.598
familyClostridiales_Family_XI_Incertae_Sedis-0.0160.4770.612
speciesBacteroides_faecis-0.0160.4770.612
speciesAcidaminococcus_fermentans-0.0160.480.614
speciesBacteroides_plebeius-0.0160.4880.623
speciesBacteroides_eggerthii-0.0160.4950.63
genusGordonibacter0.0160.4990.631
speciesGordonibacter_pamelaeae0.0160.4990.631
orderActinomycetales0.0150.5120.646
speciesClostridium_asparagiforme-0.0150.5190.653
speciesPeptostreptococcus_anaerobius-0.0150.520.653
speciesErysipelotrichaceae_bacterium_6_1_45-0.0150.5290.662
speciesCollinsella_intestinalis-0.0140.5330.666
speciesClostridium_leptum0.0140.5440.677
genusCoriobacteriaceae_noname0.0140.550.683
speciesKlebsiella_phage_KP360.0140.5570.69
speciesEggerthella_unclassified0.0130.5610.693
speciesEubacterium_sp_3_1_310.0130.5660.698
orderEnterobacteriales-0.0130.5760.706
familyEnterobacteriaceae-0.0130.5760.706
speciesClostridium_citroniae-0.0130.5790.708
speciesBacteroides_massiliensis-0.0130.5840.712
speciesHoldemania_unclassified0.0120.590.718
speciesOscillibacter_sp_KLE_1745-0.0120.5920.718
speciesLactococcus_phage_phi70.0120.5950.718
speciesFusobacterium_varium0.0120.5970.718
speciesParabacteroides_johnsonii-0.0120.5970.718
speciesClostridium_spiroforme-0.0120.5990.718
speciesOscillibacter_sp_KLE_1728-0.0120.5990.718
speciesParaprevotella_xylaniphila0.0120.6030.721
speciesBifidobacterium_breve-0.0120.6060.722
speciesCoriobacteriaceae_bacterium_phI0.0110.6220.74
speciesAnaerotruncus_unclassified0.0110.6240.74
speciesBifidobacterium_animalis0.0110.6380.755
genusMorganella-0.0110.6470.762
speciesMorganella_morganii-0.0110.6470.762
speciesMegamonas_hypermegale-0.010.6510.764
speciesParabacteroides_sp_D13-0.010.6530.765
orderAeromonadales0.010.6570.768
speciesBacteroides_xylanisolvens-0.010.6760.788
speciesStreptococcus_pasteurianus-0.010.680.791
speciesCollinsella_tanakaei-0.0090.6850.794
speciesSutterella_parvirubra-0.0090.690.798
speciesEubacterium_dolichum0.0090.6990.807
genusCampylobacter0.0090.7060.811
genusClostridium0.0090.7060.811
speciesBifidobacterium_dentium-0.0090.7090.812
speciesBacteroides_cellulosilyticus-0.0080.7160.818
familyOscillospiraceae0.0080.7290.829
genusOscillibacter0.0080.7290.829
speciesClostridium_ramosum-0.0080.7330.832
speciesParaprevotella_clara-0.0080.7360.833
speciesBacteroides_coprophilus-0.0080.7390.834
speciesLactobacillus_acidophilus0.0080.7420.836
familySuccinivibrionaceae0.0070.7470.839
genusAcidaminococcus0.0070.7660.857
genusSutterellaceae_unclassified-0.0070.7660.857
speciesButyrivibrio_crossotus0.0070.7690.858
speciesLactococcus_phage_jm2-0.0070.7740.862
familyEnterococcaceae-0.0060.7850.872
speciesOscillibacter_unclassified0.0060.7930.879
genusSuccinatimonas0.0060.7990.879
speciesSuccinatimonas_hippei0.0060.7990.879
genusErysipelotrichaceae_noname-0.0060.80.879
familyCampylobacteraceae0.0060.8010.879
speciesErysipelotrichaceae_bacterium_21_30.0060.8060.883
speciesLactococcus_phage_bIL670.0050.8180.894
speciesPeptostreptococcus_stomatis0.0050.830.902
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0050.8360.902
speciesBacteroides_fluxus-0.0050.8390.902
genusEggerthella0.0050.840.902
genusPhascolarctobacterium0.0050.8410.902
speciesPhascolarctobacterium_succinatutens0.0050.8410.902
orderPseudomonadales0.0050.8430.902
speciesLactobacillus_vaginalis-0.0050.8430.902
speciesLactobacillus_crispatus0.0050.8430.902
speciesMegamonas_rupellensis0.0040.8520.909
genusActinomyces-0.0040.8550.909
speciesLactobacillus_casei_paracasei0.0040.8550.909
speciesBacteroides_coprocola-0.0040.8690.922
genusEnterococcus-0.0040.8720.922
familyActinomycetaceae-0.0040.8730.922
genusOlsenella0.0030.8960.944
speciesLactobacillus_gasseri-0.0030.9060.952
speciesStreptococcus_infantarius0.0030.9090.953
familyClostridiaceae0.0030.9140.957
speciesAlistipes_unclassified-0.0020.9180.959
speciesParabacteroides_distasonis0.0020.920.959
speciesClostridium_sp_KLE_17550.0020.9260.963
speciesBacteroides_barnesiae-0.0020.9320.963
speciesLactobacillus_delbrueckii0.0020.9360.963
speciesAcidaminococcus_unclassified-0.0020.9380.963
classErysipelotrichia0.0020.9390.963
orderErysipelotrichales0.0020.9390.963
familyErysipelotrichaceae0.0020.9390.963
genusFlavonifractor0.0010.9480.966
speciesFusobacterium_nucleatum0.0020.9480.966
speciesFlavonifractor_plautii0.0010.9480.966
speciesBacteroides_pectinophilus0.0010.9510.967
speciesOlsenella_unclassified0.0010.9650.977
speciesAlistipes_sp_AP11-0.0010.9650.977
genusMegamonas-0.0010.9670.977
genusC2likevirus0.0010.9730.98
speciesC2likevirus_unclassified0.0010.9740.98
speciesMegamonas_unclassified-0.0010.9780.982
classEpsilonproteobacteria-0.0010.9830.983
orderCampylobacterales-0.0010.9830.983
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.01114045115430.01955873999870.00092216500825615905.25463
ObesityDenmark1691230.02243145617760.01802413210710.0643577263386572618.8287
Ulcerative colitisSpain78660.02528568615430.01689092006630.111631467394753524.8565
Liver cirrhosisChina1201140.0159337876690.01548362743380.1223305189161732158.1847
Type II diabetesDenmark752770.01781080497670.02070012601180.2318327740061388245.5043
Colorectal cancerAustria64350.01797945602920.01004227293460.5459499979221936065.5028
Rheumatoid arthritisChina127980.03012461589060.02979952384060.5693276998011916563.911
Crohns diseaseSpain17660.0239121923420.01689092006630.5725550356392450381.473
Type II diabetesSweden53920.02125503203650.02395533716590.9376750136692788494.426
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382