MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-09 17:35:27 PST
Job id & description: 1619, ppy_13892
Query type: protein
Count queries & homologs: 18, 102
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
locus_tag="XBJ1359996CompleteK06200COG1966ProteobacteriaEscherichia100.0100.090.66
locus_tag="XBJ1358757CompleteK06200COG1966ProteobacteriaProvidencia100.0100.089.68
locus_tag="XBJ1359163CompleteK06200COG1966ProteobacteriaKlebsiella100.0100.088.01
locus_tag="XBJ1360317CompleteK06200COG1966ProteobacteriaKlebsiella100.0100.087.87
locus_tag="XBJ1359517CompleteK06200COG1966ProteobacteriaKlebsiella100.0100.087.73
locus_tag="XBJ1359071CompleteK06200COG1966ProteobacteriaEnterobacter100.0100.087.31
locus_tag="XBJ1360456CompleteK06200COG1966ProteobacteriaCitrobacter100.0100.087.73
locus_tag="XBJ1343672Lack 5'-endK06200COG1966ProteobacteriaEscherichia100.098.3587.17
locus_tag="XBJ1358897CompleteK06200COG1966ProteobacteriaEnterobacter100.0100.086.89
locus_tag="XBJ1358809CompleteK06200COG1966ProteobacteriaEnterobacter100.0100.086.89
locus_tag="XBJ1360253Lack 3'-endK06200COG1966ProteobacteriaEnterobacter100.0100.086.89
locus_tag="XBJ1359997CompleteK06200COG1966ProteobacteriaProteus100.0100.087.17
locus_tag="XBJ1359091CompleteK06200COG1966ProteobacteriaEnterobacter100.0100.086.47
locus_tag="XBJ1360426CompleteK06200COG1966ProteobacteriaCitrobacter100.0100.087.31
locus_tag="XBJ1383388CompleteK02011COG1178ProteobacteriaProteus100.098.8682.8
locus_tag="XBJ1396711CompleteK02011COG1178ProteobacteriaEscherichia99.7199.7184.2
locus_tag="XBJ1396958CompleteK02011COG1178ProteobacteriaCitrobacter99.7199.7183.91
locus_tag="XBJ1396942CompleteK02011COG1178ProteobacteriaEnterobacter99.7199.7184.2
locus_tag="XBJ1396934CompleteK02011COG1178ProteobacteriaCitrobacter99.7199.7183.91
locus_tag="XBJ1366829CompleteK02011COG1178ProteobacteriaEscherichia99.7197.0584.06
locus_tag="XBJ1372447CompleteK02011COG1178ProteobacteriaKlebsiella99.7197.683.48
locus_tag="XBJ1462438Lack 3'-endK02011COG1178Proteobacteriaunknown91.1896.1982.09
locus_tag="XBJ1933496CompleteK02011COG1178ProteobacteriaProvidencia72.4100.091.42
locus_tag="XBJ11285315CompleteK03837COG0814ProteobacteriaProteus100.0100.083.97
locus_tag="XBJ11301993CompleteK03837COG0814Proteobacteriaunknown100.0100.083.45
locus_tag="XBJ11158417CompleteK03837COG0814ProteobacteriaCitrobacter100.096.182.88
locus_tag="XBJ11286715CompleteK03837COG0814ProteobacteriaEnterobacter100.0100.082.43
locus_tag="XBJ11286366CompleteK03837COG0814ProteobacteriaEnterobacter100.0100.082.43
locus_tag="XBJ11287972CompleteK03837COG0814ProteobacteriaEnterobacter100.0100.082.21
locus_tag="XBJ11099725CompleteK03837COG0814ProteobacteriaCitrobacter100.094.2682.66
locus_tag="XBJ11053226CompleteK03837COG0814ProteobacteriaEnterobacter100.092.6882.43
locus_tag="XBJ11284203CompleteK03837COG0814ProteobacteriaCitrobacter100.0100.082.21
locus_tag="XBJ11249398CompleteK03327COG0534ProteobacteriaProvidencia100.099.5579.15
locus_tag="XBJ11255081Lack 5'-endK03837COG0814ProteobacteriaEscherichia100.099.1180.86
locus_tag="XBJ11263422CompleteK03327COG0534ProteobacteriaProteus100.0100.077.58
locus_tag="XBJ11336849CompleteK03837COG0814Proteobacteriaunknown97.0598.1781.78
locus_tag="XBJ11452553CompleteK03837COG0814ProteobacteriaEnterobacter95.01100.083.89
locus_tag="XBJ11422299CompleteK03837COG0814ProteobacteriaEscherichia100.0100.076.8
locus_tag="XBJ11248667CompleteK03327COG0534unknownunknown100.099.5574.44
locus_tag="XBJ11363900CompleteK03837COG0814unknownunknown96.1598.1570.52
locus_tag="XBJ11345464CompleteK03837COG0814unknownunknown95.6997.9374.88
locus_tag="XBJ11345381CompleteK03837COG0814unknownunknown95.6997.9374.65
gene="fbpC"2063335CompleteK02010COG3842Proteobacteriaunknown99.7197.2182.76
locus_tag="XBJ11266435CompleteK03837COG0814FirmicutesMegasphaera95.9295.0672.34
gene="fbpC"2097355CompleteK02010COG3842ProteobacteriaProvidencia99.1497.4682.37
locus_tag="XBJ11266857CompleteK03837COG0814FirmicutesMegasphaera95.9295.0672.1
locus_tag="XBJ12233354CompleteK02012COG1840ProteobacteriaProteus100.0100.082.8
locus_tag="XBJ11267513CompleteK03837COG0814Firmicutesunknown95.9295.0672.34
locus_tag="XBJ12234673CompleteK02012COG1840ProteobacteriaProvidencia100.0100.082.8
gene="fbpC"2197300CompleteK02010COG3842ProteobacteriaProteus99.14100.081.21
locus_tag="XBJ12233364CompleteK02012COG1840Proteobacteriaunknown100.0100.081.92
locus_tag="XBJ12237652CompleteK02012COG1840ProteobacteriaCitrobacter100.0100.080.47
locus_tag="XBJ12229071CompleteK02012COG1840ProteobacteriaKlebsiella100.0100.080.17
gene="fbpC"2132979CompleteK02010COG3842ProteobacteriaCitrobacter100.098.8678.8
locus_tag="XBJ12237797CompleteK02012COG1840ProteobacteriaCitrobacter100.0100.080.47
locus_tag="XBJ12230148CompleteK02012COG1840ProteobacteriaEscherichia100.0100.080.17
gene="fbpC"2123574CompleteK02010COG3842ProteobacteriaEscherichia99.4398.378.96
gene="fbpC"2178165CompleteK02010COG3842ProteobacteriaEnterobacter99.4399.4378.96
gene="fbpC"2125248CompleteK02010COG3842ProteobacteriaKlebsiella99.4398.377.52
locus_tag="XBJ12237700CompleteK02012COG1840ProteobacteriaEnterobacter100.0100.079.3
locus_tag="XBJ12229969CompleteK02012COG1840ProteobacteriaEscherichia100.0100.079.3
gene="fbpC"2125474CompleteK02010COG3842ProteobacteriaKlebsiella99.4398.377.23
gene="fbpC"2126066CompleteK02010COG3842ProteobacteriaEscherichia99.4398.377.81
locus_tag="XBJ12247931CompleteK03837COG0814ProteobacteriaEnterobacter75.7498.5481.6
locus_tag="XBJ12634521Lack 5'-endK03837COG0814ProteobacteriaCitrobacter70.07100.080.45
locus_tag="XBJ12118137CompleteK02234COG0523unknownunknown100.089.872.56
locus_tag="XBJ12503139CompleteK02234COG0523ProteobacteriaProvidencia100.098.4574.76
locus_tag="XBJ12462580CompleteK02234COG0523ProteobacteriaProteus100.097.5471.61
locus_tag="XBJ13335415Lack 5'-endK02012COG1840ProteobacteriaCitrobacter78.13100.084.33
gene="fbpC"3523435Lack both endsK02010COG3842ProteobacteriaProteus73.3599.2287.89
locus_tag="XBJ12201362CompleteK02234COG0523ProteobacteriaEscherichia100.091.3370.03
locus_tag="XBJ12572134CompleteK02234COG0523ProteobacteriaEnterobacter100.099.3770.03
locus_tag="XBJ12571994CompleteK02234COG0523ProteobacteriaEnterobacter100.099.3770.03
locus_tag="XBJ13586964Lack 5'-endK02012COG1840ProteobacteriaHaemophilus74.05100.072.05
locus_tag="XBJ14183651CompleteunknownCOG1462Proteobacteriaunknown98.2197.7774.89
locus_tag="XBJ14211182CompleteunknownCOG1462Proteobacteriaunknown99.198.6576.02
locus_tag="XBJ14195181CompleteunknownCOG1462unknownunknown97.7698.2173.97
locus_tag="XBJ14211371CompleteunknownCOG1462ProteobacteriaAggregatibacter100.0100.070.4
locus_tag="XBJ13910642CompleteunknownCOG1462ProteobacteriaProteus98.2192.4171.69
locus_tag="XBJ14609173CompleteK07357COG0582ProteobacteriaProteus100.089.2775.96
locus_tag="XBJ15072826CompleteK07357COG0582unknownunknown100.097.8672.68
locus_tag="XBJ18607653CompleteunknownCOG2879ProteobacteriaProvidencia100.0100.085.07
locus_tag="XBJ18589918CompleteunknownCOG2879ProteobacteriaKlebsiella100.0100.082.09
locus_tag="XBJ18590785CompleteunknownCOG2879ProteobacteriaKlebsiella100.0100.080.6
locus_tag="XBJ17942098CompleteunknownCOG2879ProteobacteriaEnterobacter100.077.9180.6
locus_tag="XBJ17905522Lack 5'-endunknownCOG2879ProteobacteriaEnterobacter100.077.0180.6
locus_tag="XBJ18701611CompleteunknownCOG2879ProteobacteriaCitrobacter100.0100.076.12
locus_tag="XBJ18566317CompleteunknownCOG2879ProteobacteriaProteus100.0100.085.29
locus_tag="XBJ18050902CompleteunknownCOG2879ProteobacteriaEscherichia100.079.2771.64
locus_tag="XBJ18685963CompleteunknownCOG2879ProteobacteriaEnterobacter100.0100.071.64
locus_tag="XBJ18689034CompleteunknownCOG2879ProteobacteriaEnterobacter100.0100.071.64
locus_tag="XBJ18694979CompleteunknownCOG2879ProteobacteriaCitrobacter100.0100.071.64
locus_tag="XBJ18683979CompleteunknownCOG2879ProteobacteriaProvidencia100.0100.071.64
locus_tag="XBJ18686814CompleteunknownCOG2879ProteobacteriaEnterobacter100.0100.071.64
locus_tag="XBJ18667464CompleteunknownCOG2879ProteobacteriaKlebsiella100.0100.071.64
locus_tag="XBJ18656327CompleteunknownCOG2879ProteobacteriaKlebsiella100.0100.071.64
locus_tag="XBJ18350295CompleteunknownCOG2879ProteobacteriaEnterobacter100.087.8470.15
locus_tag="XBJ18695079CompleteunknownCOG2879ProteobacteriaEnterobacter100.0100.070.15
locus_tag="XBJ18690695CompleteunknownCOG2879ProteobacteriaEnterobacter100.0100.070.15
locus_tag="XBJ18689375CompleteunknownCOG2879ProteobacteriaEnterobacter100.0100.070.15
locus_tag="XBJ18672857CompleteunknownCOG2879ProteobacteriaCitrobacter100.0100.070.15
locus_tag="XBJ18662025CompleteunknownCOG2879ProteobacteriaCitrobacter100.0100.070.15
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.9280.00.0
orderEnterobacteriales0.9570.00.0
familyEnterobacteriaceae0.9570.00.0
genusEscherichia0.9040.00.0
speciesEscherichia_coli0.880.00.0
phylumProteobacteria0.7182.14e-2961.68e-294
genusKlebsiella0.5895.33e-1753.59e-173
speciesEscherichia_unclassified0.5743.85e-1642.27e-162
speciesKlebsiella_pneumoniae0.5563.55e-1521.86e-150
genusPantoea0.4561.1e-964.72e-95
speciesPantoea_unclassified0.4561.1e-964.72e-95
genusEnterobacter0.4256.21e-832.44e-81
speciesEnterobacter_cloacae0.4221.17e-814.25e-80
genusCitrobacter0.3595.21e-581.76e-56
speciesRuminococcus_gnavus0.3542.39e-567.52e-55
familyFusobacteriaceae0.3481.68e-544.96e-53
speciesCitrobacter_unclassified0.3474.45e-541.24e-52
speciesCitrobacter_freundii0.3431.13e-522.96e-51
genusFusobacterium0.3421.33e-523.3e-51
phylumFusobacteria0.3421.58e-523.39e-51
classFusobacteriia0.3421.58e-523.39e-51
orderFusobacteriales0.3421.58e-523.39e-51
speciesClostridium_nexile0.3252.26e-474.64e-46
speciesSubdoligranulum_unclassified-0.3222.64e-465.19e-45
genusSubdoligranulum-0.3151.86e-443.51e-43
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3145.45e-449.89e-43
speciesEubacterium_siraeum-0.2941.5e-382.62e-37
speciesKlebsiella_oxytoca0.2932.25e-383.79e-37
genusCoprobacillus0.291.67e-372.72e-36
genusMegasphaera0.2892.48e-373.9e-36
speciesAnaerotruncus_unclassified-0.2798.36e-351.27e-33
speciesCoprobacillus_unclassified0.2741.23e-331.81e-32
genusButyrivibrio-0.271.5e-322.15e-31
speciesClostridium_bolteae0.2684.08e-325.66e-31
speciesKlebsiella_unclassified0.263.67e-304.95e-29
speciesClostridium_hathewayi0.2595.67e-307.43e-29
speciesClostridium_ramosum0.2586.47e-308.25e-29
genusPseudoflavonifractor-0.2553.29e-293.98e-28
speciesPseudoflavonifractor_capillosus-0.2553.29e-293.98e-28
genusWeissella0.2539.9e-291.17e-27
speciesEubacterium_ramulus-0.2531.27e-281.46e-27
genusCoprococcus-0.2463.77e-274.24e-26
genusEnterococcus0.2391.05e-251.15e-24
genusBarnesiella-0.2381.56e-251.64e-24
speciesBarnesiella_intestinihominis-0.2381.56e-251.64e-24
speciesVeillonella_parvula0.2381.81e-251.86e-24
familyEnterococcaceae0.2372.21e-252.22e-24
speciesClostridium_perfringens0.2372.31e-252.27e-24
familyRuminococcaceae-0.2341.03e-249.92e-24
speciesWeissella_confusa0.2341.18e-241.11e-23
speciesFusobacterium_ulcerans0.235.98e-245.53e-23
speciesMegasphaera_micronuciformis0.2272.53e-232.3e-22
speciesClostridium_symbiosum0.2263.9e-233.47e-22
speciesBifidobacterium_adolescentis-0.2264.16e-233.64e-22
genusVeillonella0.2264.46e-233.83e-22
speciesEubacterium_rectale-0.2264.83e-234.07e-22
speciesLactobacillus_salivarius0.2255.53e-234.58e-22
classClostridia-0.2249.42e-237.54e-22
orderClostridiales-0.2249.42e-237.54e-22
speciesClostridium_leptum-0.2231.55e-221.22e-21
genusEubacterium-0.2222.46e-221.9e-21
familyEubacteriaceae-0.2222.53e-221.93e-21
speciesStreptococcus_anginosus0.225.35e-224.01e-21
speciesBacteroides_uniformis-0.2198.87e-226.54e-21
speciesSutterella_wadsworthensis-0.2172.54e-211.84e-20
speciesCoprococcus_comes-0.2163.46e-212.47e-20
speciesFusobacterium_nucleatum0.2163.67e-212.59e-20
orderLactobacillales0.2154.46e-213.1e-20
familyBacteroidales_noname-0.2154.89e-213.25e-20
genusBacteroidales_noname-0.2154.89e-213.25e-20
speciesBacteroidales_bacterium_ph8-0.2154.89e-213.25e-20
classBacilli0.2155.7e-213.74e-20
speciesButyrivibrio_unclassified-0.2131.16e-207.5e-20
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2131.43e-209.12e-20
familyClostridiaceae0.213.91e-202.46e-19
genusCoprobacter-0.215.08e-203.11e-19
speciesCoprobacter_fastidiosus-0.215.08e-203.11e-19
genusClostridium0.2088.84e-205.35e-19
speciesBacteroides_fragilis0.2071.27e-197.59e-19
familyLeuconostocaceae0.2071.45e-198.56e-19
genusSutterella-0.2062.74e-191.6e-18
speciesMegamonas_unclassified0.2053.18e-191.83e-18
genusMegamonas0.2053.75e-192.13e-18
speciesLactococcus_garvieae0.2037.83e-194.4e-18
genusRuminococcaceae_noname-0.2011.54e-188.45e-18
speciesRuminococcaceae_bacterium_D16-0.2011.54e-188.45e-18
speciesFusobacterium_mortiferum0.2012.01e-181.09e-17
familyRikenellaceae-0.22.27e-181.2e-17
genusAlistipes-0.22.27e-181.2e-17
speciesLactobacillus_mucosae0.1977.01e-183.68e-17
speciesDorea_longicatena-0.1977.38e-183.83e-17
speciesEggerthella_unclassified0.1978.67e-184.45e-17
speciesFusobacterium_varium0.1961e-175.08e-17
speciesOscillibacter_unclassified-0.1961.11e-175.57e-17
speciesEnterococcus_faecalis0.1961.19e-175.91e-17
speciesEubacterium_hallii-0.1952.06e-171.01e-16
speciesMegasphaera_unclassified0.1942.29e-171.11e-16
speciesRoseburia_hominis-0.1942.5e-171.2e-16
speciesStreptococcus_infantarius0.1942.78e-171.33e-16
speciesWeissella_cibaria0.1943.07e-171.45e-16
familyOscillospiraceae-0.1924.61e-172.13e-16
genusOscillibacter-0.1924.61e-172.13e-16
genusDorea-0.1925.72e-172.62e-16
genusAnaerotruncus-0.1917.85e-173.55e-16
speciesC2likevirus_unclassified-0.1917.9e-173.55e-16
speciesMitsuokella_unclassified-0.191.08e-164.81e-16
speciesClostridiales_bacterium_1_7_47FAA0.191.3e-165.73e-16
speciesCoprococcus_catus-0.191.35e-165.9e-16
speciesVeillonella_unclassified0.1882.16e-169.35e-16
genusC2likevirus-0.1882.38e-161.02e-15
speciesAnaerostipes_hadrus-0.1873.59e-161.53e-15
genusEggerthella0.1873.85e-161.62e-15
speciesAlistipes_shahii-0.1865.08e-162.12e-15
genusOdoribacter-0.1857.01e-162.9e-15
speciesAlistipes_senegalensis-0.1831.29e-155.29e-15
speciesVeillonella_dispar0.1822.06e-158.01e-15
phylumVerrucomicrobia-0.1822.07e-158.01e-15
classVerrucomicrobiae-0.1822.07e-158.01e-15
orderVerrucomicrobiales-0.1822.07e-158.01e-15
familyVerrucomicrobiaceae-0.1822.07e-158.01e-15
genusAkkermansia-0.1822.07e-158.01e-15
speciesAkkermansia_muciniphila-0.1822.07e-158.01e-15
speciesEnterobacter_aerogenes0.1795.59e-152.15e-14
genusMitsuokella-0.1795.71e-152.17e-14
speciesStreptococcus_thermophilus-0.1796.97e-152.63e-14
speciesClostridium_citroniae0.1771.22e-144.57e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1752.42e-148.99e-14
speciesOdoribacter_splanchnicus-0.1752.8e-141.03e-13
familyBacillales_noname0.1735.51e-142e-13
genusGemella0.1735.51e-142e-13
speciesBifidobacterium_dentium0.1726.1e-142.2e-13
familyLactobacillaceae0.1711.04e-133.72e-13
speciesAlistipes_putredinis-0.171.48e-135.25e-13
genusLactobacillus0.171.55e-135.46e-13
genusPyramidobacter0.1692.07e-137.18e-13
speciesPyramidobacter_piscolens0.1692.07e-137.18e-13
genusFlavonifractor0.1682.45e-138.28e-13
speciesFlavonifractor_plautii0.1682.45e-138.28e-13
phylumSynergistetes0.1682.49e-138.28e-13
classSynergistia0.1682.49e-138.28e-13
orderSynergistales0.1682.49e-138.28e-13
familySynergistaceae0.1682.49e-138.28e-13
speciesStreptococcus_salivarius0.1682.54e-138.38e-13
speciesBacteroides_plebeius0.1674.07e-131.33e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1658.15e-132.65e-12
genusPrevotella0.1631.17e-123.78e-12
speciesPrevotella_buccae0.1631.27e-124.08e-12
speciesHaemophilus_parainfluenzae0.1631.47e-124.69e-12
orderPasteurellales0.1621.81e-125.7e-12
familyPasteurellaceae0.1621.81e-125.7e-12
speciesStreptococcus_mitis_oralis_pneumoniae0.1622.04e-126.38e-12
genusHaemophilus0.1612.15e-126.68e-12
speciesCollinsella_aerofaciens-0.1612.2e-126.79e-12
phylumFirmicutes-0.162.98e-129.13e-12
speciesEnterococcus_faecium0.1585.54e-121.69e-11
speciesMegasphaera_elsdenii0.1577.53e-122.28e-11
familyPorphyromonadaceae-0.1551.58e-114.75e-11
speciesDorea_formicigenerans-0.1551.76e-115.26e-11
speciesBacteroides_stercoris0.1542.38e-117.07e-11
familyStreptococcaceae0.1532.81e-118.29e-11
genusCollinsella-0.1533.18e-119.32e-11
speciesVeillonella_atypica0.1524.24e-111.24e-10
genusMorganella0.158.04e-112.31e-10
speciesMorganella_morganii0.158.04e-112.31e-10
genusCampylobacter0.1499.8e-112.8e-10
classEpsilonproteobacteria0.1491.03e-102.91e-10
orderCampylobacterales0.1491.03e-102.91e-10
speciesButyrivibrio_crossotus-0.1481.12e-103.15e-10
familyCampylobacteraceae0.1481.26e-103.52e-10
genusSolobacterium0.1471.48e-104.09e-10
speciesSolobacterium_moorei0.1471.48e-104.09e-10
speciesBifidobacterium_pseudocatenulatum0.1471.69e-104.64e-10
orderBacillales0.1462.11e-105.76e-10
speciesRuminococcus_sp_5_1_39BFAA-0.1462.37e-106.43e-10
genusStreptococcus0.1462.45e-106.61e-10
speciesCoprococcus_sp_ART55_1-0.1452.74e-107.35e-10
familyPeptostreptococcaceae0.1453.04e-108.11e-10
speciesAnaerostipes_unclassified0.1453.37e-108.94e-10
speciesPrevotella_copri0.1443.81e-101e-09
speciesAlistipes_onderdonkii-0.1444.26e-101.12e-09
speciesKlebsiella_sp_MS_92_30.1434.79e-101.25e-09
speciesMegamonas_rupellensis0.1435.2e-101.35e-09
familySutterellaceae-0.1435.46e-101.41e-09
speciesBlautia_hydrogenotrophica-0.1426.42e-101.65e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1418.82e-102.25e-09
speciesMethanobrevibacter_smithii-0.141.2e-093.05e-09
genusProteus0.141.22e-093.08e-09
speciesRuminococcus_lactaris-0.1391.55e-093.89e-09
speciesStreptococcus_lutetiensis0.1391.56e-093.9e-09
genusAggregatibacter0.1391.77e-094.4e-09
genusPeptostreptococcus0.1382.1e-095.19e-09
genusMethanobrevibacter-0.1372.47e-096.07e-09
orderBurkholderiales-0.1372.86e-096.98e-09
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phylumEuryarchaeota-0.1354.09e-099.85e-09
genusClostridiales_noname0.1355.16e-091.24e-08
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familyMethanobacteriaceae-0.1337.42e-091.74e-08
speciesStreptococcus_australis0.1329.91e-092.32e-08
classBetaproteobacteria-0.1311.45e-083.37e-08
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genusBlautia0.1292.33e-085.36e-08
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genusPeptostreptococcaceae_noname0.1283.03e-086.88e-08
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speciesParaprevotella_xylaniphila-0.1247.96e-081.76e-07
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speciesAggregatibacter_segnis0.1231.05e-072.28e-07
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speciesCampylobacter_concisus0.1192.45e-075.14e-07
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speciesPeptostreptococcus_stomatis0.1174.14e-078.61e-07
genusAdlercreutzia-0.1156.04e-071.24e-06
speciesAdlercreutzia_equolifaciens-0.1156.04e-071.24e-06
genusActinobacillus0.1147.16e-071.46e-06
speciesActinobacillus_unclassified0.1147.16e-071.46e-06
speciesStreptococcus_pasteurianus0.1148.4e-071.71e-06
speciesEnterobacteria_phage_HK5440.1139.7e-071.96e-06
speciesOdoribacter_unclassified-0.1121.17e-062.36e-06
speciesParaprevotella_unclassified-0.1121.23e-062.47e-06
genusAnaerostipes-0.1111.41e-062.82e-06
genusParaprevotella-0.1111.46e-062.91e-06
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speciesAcidaminococcus_fermentans0.1092.44e-064.76e-06
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speciesLachnospiraceae_bacterium_5_1_63FAA-0.1082.67e-065.16e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1073.27e-066.3e-06
speciesRuminococcus_obeum-0.1073.3e-066.33e-06
speciesBacteroides_coprocola0.1073.67e-067.01e-06
speciesMegamonas_funiformis0.1064.38e-068.34e-06
speciesBacteroides_thetaiotaomicron0.1064.66e-068.83e-06
speciesHaemophilus_paraphrohaemolyticus0.1064.71e-068.89e-06
speciesParaprevotella_clara-0.1055.12e-069.63e-06
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genusAcidaminococcaceae_unclassified-0.1011.17e-052.16e-05
speciesAlistipes_sp_HGB5-0.1011.17e-052.16e-05
speciesBifidobacterium_catenulatum-0.1011.26e-052.31e-05
speciesBacteroides_sp_3_1_190.11.39e-052.54e-05
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familyCoriobacteriaceae-0.11.63e-052.95e-05
speciesParabacteroides_merdae-0.0991.8e-053.24e-05
speciesErysipelotrichaceae_bacterium_21_3-0.0982.03e-053.64e-05
speciesRuminococcus_champanellensis-0.0972.45e-054.38e-05
speciesRoseburia_intestinalis-0.0972.53e-054.51e-05
familyMicrococcaceae0.0963.16e-055.61e-05
speciesBacteroides_nordii0.0963.26e-055.76e-05
genusRothia0.0963.36e-055.92e-05
genusLambdalikevirus0.0944.34e-057.62e-05
familyClostridiales_noname0.0944.6e-058.04e-05
speciesLactobacillus_amylovorus0.0944.73e-058.24e-05
speciesLactobacillus_crispatus0.0945.04e-058.75e-05
speciesRoseburia_unclassified-0.0935.23e-059.04e-05
speciesStreptococcus_sanguinis0.0935.5e-059.47e-05
speciesClostridium_sp_L2_50-0.0927.1e-050.000122
speciesAlistipes_sp_AP11-0.0918.48e-050.000145
speciesEubacterium_eligens-0.0918.61e-050.000147
speciesBacteroides_salyersiae0.0890.0001090.000185
speciesLactobacillus_vaginalis0.0850.0002260.000382
speciesLachnospiraceae_bacterium_1_4_56FAA0.0850.0002510.000423
speciesLactobacillus_oris0.0840.0002580.000433
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speciesPorphyromonas_uenonis0.0840.0002840.000472
speciesHaemophilus_sputorum0.0830.0003070.000508
speciesLactobacillus_plantarum0.0830.0003190.000526
speciesOscillibacter_sp_KLE_1745-0.0830.0003450.000567
speciesLachnospiraceae_bacterium_5_1_57FAA0.0830.0003480.00057
genusParabacteroides-0.0810.0004290.000701
speciesBacteroides_dorei-0.0810.0004710.000767
speciesMethanobrevibacter_unclassified-0.080.0005130.000832
speciesStreptococcus_mutans0.080.0005280.000853
speciesLactococcus_phage_P680-0.080.0005310.000855
genusRoseburia-0.080.0005380.000864
speciesBacteroides_finegoldii0.080.0005450.000872
classNegativicutes0.0790.0005930.000942
orderSelenomonadales0.0790.0005930.000942
speciesLactobacillus_acidophilus-0.0790.0006010.000952
speciesLactobacillus_gasseri0.0780.0006820.00108
speciesEubacterium_limosum0.0780.0006920.00109
genusCatenibacterium-0.0780.0007320.00114
speciesCatenibacterium_mitsuokai-0.0780.0007320.00114
speciesBlautia_producta0.0780.0007470.00116
speciesClostridium_sp_ATCC_BAA_4420.0770.0008030.00125
speciesBacteroides_oleiciplenus0.0770.0008410.0013
speciesBacteroides_pectinophilus-0.0760.0009330.00144
genusParvimonas0.0760.001020.00157
speciesParvimonas_unclassified0.0760.001030.00158
speciesBifidobacterium_breve0.0750.001090.00166
genusLeuconostoc0.0750.001120.00171
speciesOscillibacter_sp_KLE_1728-0.0750.001180.00179
speciesDialister_invisus-0.0750.001180.00179
speciesEggerthella_lenta0.0750.001190.00179
genusPeptoniphilus0.0750.00120.0018
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speciesOlsenella_unclassified-0.0720.001770.00264
genusSiphoviridae_noname-0.0710.002010.00299
genusDialister-0.070.002530.00376
speciesBifidobacterium_animalis-0.0690.002790.00413
speciesCoprobacillus_sp_D60.0680.003350.00494
speciesAlistipes_unclassified-0.0680.003390.00498
speciesHoldemania_filiformis-0.0670.003560.00522
genusMyoviridae_noname0.0670.003940.00575
genusPropionibacterium-0.0670.003950.00575
speciesParabacteroides_goldsteinii0.0660.004270.0062
speciesBacteroides_xylanisolvens0.0660.004310.00624
speciesParabacteroides_sp_D13-0.0660.004530.00654
genusPhascolarctobacterium-0.0650.004680.00671
speciesPhascolarctobacterium_succinatutens-0.0650.004680.00671
orderAeromonadales0.0650.004970.00711
speciesCoprobacillus_sp_29_10.0640.00540.0077
speciesEubacterium_biforme-0.0640.005640.00802
genusPorphyromonas0.0640.005980.00848
familyOxalobacteraceae-0.0630.006220.00876
speciesHoldemania_unclassified-0.0630.006220.00876
speciesAcidaminococcus_unclassified-0.0630.00640.00899
speciesClostridium_asparagiforme0.0620.007090.00993
genusOxalobacter-0.0620.007530.0105
speciesOxalobacter_formigenes-0.0620.007530.0105
speciesRuminococcus_bromii-0.0620.007670.0106
speciesCollinsella_tanakaei0.0610.008480.0117
speciesLachnospiraceae_bacterium_1_1_57FAA0.060.009030.0125
speciesLactococcus_phage_936_sensu_lato-0.060.01010.0139
speciesBacteroides_cellulosilyticus-0.0590.01040.0143
genusBifidobacterium-0.0580.01160.0159
genusAcidaminococcus0.0580.01170.016
phylumViruses_noname-0.0580.01260.0171
classViruses_noname-0.0580.01260.0171
familyAcidaminococcaceae-0.0580.01270.0172
speciesBifidobacterium_angulatum-0.0570.01310.0177
speciesEubacterium_cylindroides-0.0560.01610.0217
speciesBacteroides_sp_2_1_22-0.0560.01620.0217
speciesDesulfovibrio_piger-0.0560.01640.0219
genusTunalikevirus0.0550.01690.0225
genusBilophila0.0550.0170.0226
orderBifidobacteriales-0.0550.01710.0226
familyBifidobacteriaceae-0.0550.01710.0226
speciesBilophila_unclassified0.0550.01720.0227
speciesPrevotella_bivia0.0550.01750.023
phylumActinobacteria-0.0530.02080.0272
classActinobacteria-0.0530.02080.0272
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speciesBifidobacterium_longum-0.0510.02630.0342
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orderErysipelotrichales0.0510.02770.0357
familyErysipelotrichaceae0.0510.02770.0357
genusOlsenella-0.0510.02790.0359
speciesBilophila_wadsworthia0.050.02910.0373
speciesSutterella_parvirubra0.050.03080.0394
speciesPorphyromonas_asaccharolytica0.050.03190.0407
speciesBacteroides_coprophilus0.0490.03570.0454
speciesBacteroides_sp_1_1_6-0.0480.03880.0492
speciesKlebsiella_phage_KP360.0480.03930.0497
speciesLactococcus_phage_bIL67-0.0470.04160.0525
genusSutterellaceae_unclassified-0.0470.04260.0536
genusHoldemania-0.0470.0440.0552
classDeltaproteobacteria0.0460.04440.0553
orderDesulfovibrionales0.0460.04440.0553
familyDesulfovibrionaceae0.0460.04440.0553
speciesStreptococcus_parasanguinis0.0450.05060.0629
speciesHoldemania_sp_AP20.0450.05260.0652
speciesBacteroides_salanitronis-0.0450.05290.0654
speciesBacteroides_barnesiae-0.0440.05490.0677
speciesAnaerotruncus_colihominis0.0430.0650.0799
speciesLactococcus_phage_jm2-0.0420.07140.0875
phylumBacteroidetes-0.0410.0780.0951
classBacteroidia-0.0410.07820.0951
orderBacteroidales-0.0410.07820.0951
genusGordonibacter-0.040.08060.0975
speciesGordonibacter_pamelaeae-0.040.08060.0975
familyPrevotellaceae0.040.08310.1
genusDesulfovibrio-0.0390.08930.108
speciesClostridium_sp_KLE_1755-0.0380.09740.117
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0380.10.12
speciesLactococcus_lactis-0.0380.1030.123
speciesRoseburia_inulinivorans-0.0370.1130.135
speciesPeptostreptococcus_anaerobius0.0360.120.142
speciesLactobacillus_reuteri0.0360.120.142
speciesBacteroides_eggerthii0.0360.120.142
familyBacteroidaceae0.0340.140.165
genusBacteroides0.0340.140.165
speciesCoriobacteriaceae_bacterium_phI-0.0330.1480.174
speciesLactococcus_phage_phi7-0.0330.1570.184
speciesClostridium_spiroforme-0.0330.1580.184
speciesDorea_unclassified-0.0330.1580.184
speciesErysipelotrichaceae_bacterium_2_2_44A0.0320.1620.188
genusCoriobacteriaceae_noname-0.030.1880.218
speciesLactobacillus_rhamnosus0.030.1950.226
speciesParabacteroides_unclassified0.0280.2310.267
speciesBacteroides_massiliensis0.0270.240.276
speciesBacteroides_vulgatus-0.0260.2550.293
familyPodoviridae0.0260.2660.305
speciesRuminococcus_sp_JC3040.0250.2820.322
genusSlackia0.0240.2960.337
speciesSubdoligranulum_sp_4_3_54A2FAA0.0240.2960.337
speciesLactobacillus_ruminis-0.0240.3010.342
orderPseudomonadales0.0230.3160.358
speciesParabacteroides_sp_20_3-0.0220.3370.381
orderViruses_noname-0.0220.3390.382
speciesEubacterium_dolichum0.0210.3580.402
speciesPeptostreptococcaceae_noname_unclassified-0.020.3770.423
speciesTuricibacter_unclassified-0.020.3820.427
genusErysipelotrichaceae_noname0.020.3970.443
genusLachnospiraceae_noname-0.0190.410.456
genusLactococcus0.0190.4210.466
speciesParabacteroides_johnsonii0.0190.4210.466
speciesEubacterium_sp_3_1_31-0.0180.440.486
genusMethanosphaera-0.0170.460.506
speciesMethanosphaera_stadtmanae-0.0170.460.506
speciesLactobacillus_casei_paracasei-0.0170.4750.521
speciesBacteroides_ovatus-0.0160.4890.536
speciesLactobacillus_delbrueckii-0.0150.5120.559
genusTuricibacter-0.0150.5270.574
genusSuccinatimonas0.0140.550.597
speciesSuccinatimonas_hippei0.0140.550.597
speciesCollinsella_intestinalis0.0140.5550.601
speciesMitsuokella_multacida0.0130.5640.609
speciesEggerthella_sp_1_3_56FAA-0.0130.5790.624
speciesCollinsella_unclassified-0.0130.5850.629
genusButyricimonas-0.0110.6210.664
speciesButyricimonas_synergistica-0.0110.6210.664
speciesSlackia_piriformis-0.0110.6220.664
speciesBacteroides_clarus0.0110.6330.674
speciesErysipelotrichaceae_bacterium_3_1_530.010.6670.709
genusStaphylococcus-0.010.6720.711
speciesTuricibacter_sanguinis0.010.6720.711
speciesBacteroides_caccae0.0090.6860.724
speciesErysipelotrichaceae_bacterium_6_1_450.0090.7050.741
genusButyricicoccus0.0090.7060.741
speciesButyricicoccus_pullicaecorum0.0090.7060.741
speciesDialister_succinatiphilus0.0080.7220.756
speciesParabacteroides_distasonis-0.0080.7270.759
speciesBacteroides_sp_4_3_47FAA0.0080.7350.765
familySuccinivibrionaceae0.0080.7360.765
familyViruses_noname0.0070.7490.775
genusViruses_noname0.0070.7490.775
genusBurkholderiales_noname0.0070.7610.784
speciesBurkholderiales_bacterium_1_1_470.0070.7610.784
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0060.8040.827
speciesOdoribacter_laneus-0.0050.820.841
speciesRuminococcus_callidus0.0050.8280.848
speciesBifidobacterium_bifidum0.0050.8380.856
speciesBacteroides_fluxus0.0050.840.856
familyBurkholderiales_noname0.0050.8420.857
speciesRuminococcus_torques-0.0040.8540.867
speciesStreptococcus_phage_Sfi21-0.0040.8590.87
genusParasutterella0.0020.9140.922
speciesParasutterella_excrementihominis0.0020.9140.922
genusClostridiaceae_noname0.0010.9540.958
speciesClostridiaceae_bacterium_JC1180.0010.9540.958
familyStaphylococcaceae-0.0010.9660.967
speciesBacteroides_faecis-0.0010.9670.967
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.03854303874130.01213056741464.28750245503e-132970.973547
Liver cirrhosisChina1201140.1390737746840.03083294701939.97336035752e-06358312.036
Crohns diseaseSpain17660.1054534817980.01714213525610.00453415119041656821.8387
Colorectal cancerAustria64350.2619061005090.04653609021580.027291191156117135.79578
Type II diabetesChina1831850.1254170303040.08834692854010.0351186331448606220.0337
ObesityDenmark1691230.01706183842810.03336620074860.3454104280061529550.2943
Ulcerative colitisSpain78660.007448485477720.01714213525610.4238131559951735857.2607
Type II diabetesSweden53920.02950924148080.03456519529060.6988001461442137172.3705
Rheumatoid arthritisChina127980.07507441482220.0632328208490.884224132752731491.0861
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382