MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-09 17:52:34 PST
Job id & description: 1625, 9365
Query type: protein
Count queries & homologs: 17, 14
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
locus_tag="O1651221709CompleteK02445COG2271ProteobacteriaEscherichia98.098.4572.2
locus_tag="O1651214626CompleteK02445COG2271ProteobacteriaEscherichia98.098.4571.97
locus_tag="O1651205949CompleteK02445COG2271ProteobacteriaEnterobacter96.2295.1573.67
locus_tag="O1651251059CompleteK02445COG2271ProteobacteriaKlebsiella96.2296.4373.44
locus_tag="O1651245742CompleteK02445COG2271ProteobacteriaKlebsiella96.2296.4373.44
locus_tag="O1651248257CompleteK02445COG2271ProteobacteriaKlebsiella96.2296.4373.21
locus_tag="O1651221665CompleteK02445COG2271ProteobacteriaCitrobacter97.7897.1272.5
locus_tag="O1651249942CompleteK02445COG2271ProteobacteriaKlebsiella93.7893.9774.17
locus_tag="O1651191966CompleteK02445COG2271ProteobacteriaEnterobacter93.7892.3273.7
locus_tag="O1651235283CompleteK02445COG2271ProteobacteriaEnterobacter93.7893.5673.7
locus_tag="O1651236313CompleteK02445COG2271ProteobacteriaEnterobacter99.33100.070.51
locus_tag="O1651229103CompleteK02445COG2271Proteobacteriaunknown99.1199.5671.33
locus_tag="O1651234872CompleteK02445COG2271ProteobacteriaEnterobacter93.7893.5673.7
locus_tag="O1651221801CompleteK02445COG2271ProteobacteriaCitrobacter93.7893.1473.7
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.9120.00.0
orderEnterobacteriales0.9690.00.0
familyEnterobacteriaceae0.9690.00.0
genusEscherichia0.9040.00.0
speciesEscherichia_coli0.8810.00.0
phylumProteobacteria0.7153.17e-2932.49e-291
genusKlebsiella0.6181.79e-1971.21e-195
speciesKlebsiella_pneumoniae0.5913.68e-1762.17e-174
speciesEscherichia_unclassified0.5682.77e-1601.45e-158
genusPantoea0.4572.24e-979.61e-96
speciesPantoea_unclassified0.4572.24e-979.61e-96
genusEnterobacter0.4333.89e-861.53e-84
speciesEnterobacter_cloacae0.4276.68e-842.43e-82
speciesRuminococcus_gnavus0.3533.96e-561.34e-54
genusCitrobacter0.3491.33e-544.19e-53
familyFusobacteriaceae0.3383.14e-519.26e-50
speciesCitrobacter_unclassified0.3375.37e-511.49e-49
phylumFusobacteria0.3331.17e-492.7e-48
classFusobacteriia0.3331.17e-492.7e-48
orderFusobacteriales0.3331.17e-492.7e-48
genusFusobacterium0.3331.2e-492.7e-48
speciesCitrobacter_freundii0.3316.05e-491.3e-47
speciesClostridium_nexile0.3191.86e-453.82e-44
speciesSubdoligranulum_unclassified-0.3121.28e-432.52e-42
genusSubdoligranulum-0.3051.19e-412.25e-40
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2933.04e-385.52e-37
speciesEubacterium_siraeum-0.2861.34e-362.34e-35
genusCoprobacillus0.2852.49e-364.2e-35
speciesKlebsiella_oxytoca0.2853.5e-365.7e-35
speciesClostridium_bolteae0.2821.7e-352.67e-34
genusButyrivibrio-0.2797.21e-351.1e-33
speciesClostridium_hathewayi0.2683.18e-324.69e-31
speciesAnaerotruncus_unclassified-0.2684.88e-326.98e-31
speciesCoprobacillus_unclassified0.2661.15e-311.6e-30
speciesKlebsiella_unclassified0.2652.24e-313.02e-30
genusWeissella0.2587.72e-301.01e-28
speciesClostridium_ramosum0.2571.35e-291.72e-28
genusPseudoflavonifractor-0.2463.39e-274.1e-26
speciesPseudoflavonifractor_capillosus-0.2463.39e-274.1e-26
genusCoprococcus-0.2455.51e-276.5e-26
genusEnterococcus0.2413.4e-263.91e-25
familyEnterococcaceae0.2415.12e-265.7e-25
speciesEubacterium_ramulus-0.245.19e-265.7e-25
speciesWeissella_confusa0.2372.61e-252.8e-24
speciesBifidobacterium_adolescentis-0.2373.22e-253.38e-24
genusBarnesiella-0.2355.65e-255.67e-24
speciesBarnesiella_intestinihominis-0.2355.65e-255.67e-24
speciesClostridium_symbiosum0.2341.09e-241.07e-23
speciesSutterella_wadsworthensis-0.2315.19e-245e-23
familyRuminococcaceae-0.2281.92e-231.81e-22
speciesEubacterium_rectale-0.2272.41e-232.23e-22
speciesFusobacterium_ulcerans0.2265.47e-234.97e-22
speciesButyrivibrio_unclassified-0.2213.75e-223.34e-21
speciesClostridium_perfringens0.226.58e-225.75e-21
familyClostridiaceae0.227.03e-226.03e-21
classClostridia-0.227.74e-226.41e-21
orderClostridiales-0.227.74e-226.41e-21
genusMegasphaera0.2191.08e-218.79e-21
speciesBacteroides_fragilis0.2181.57e-211.26e-20
genusSutterella-0.2181.83e-211.44e-20
genusClostridium0.2172.24e-211.73e-20
speciesClostridium_leptum-0.2163.19e-212.43e-20
genusEubacterium-0.2122.2e-201.64e-19
familyLeuconostocaceae0.2122.22e-201.64e-19
familyEubacteriaceae-0.2122.28e-201.66e-19
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2112.57e-201.84e-19
speciesEggerthella_unclassified0.2113.2e-202.25e-19
speciesStreptococcus_anginosus0.213.91e-202.71e-19
speciesCoprococcus_comes-0.214.37e-202.99e-19
speciesMitsuokella_unclassified-0.2089e-206.07e-19
speciesVeillonella_parvula0.2089.79e-206.51e-19
speciesLactobacillus_salivarius0.2081.03e-196.75e-19
speciesFusobacterium_nucleatum0.2071.54e-199.89e-19
speciesMegasphaera_micronuciformis0.2071.55e-199.89e-19
speciesDorea_longicatena-0.2061.9e-191.2e-18
speciesLactococcus_garvieae0.2052.98e-191.85e-18
speciesMegamonas_unclassified0.2053.28e-192.01e-18
genusMegamonas0.2054.02e-192.43e-18
familyBacteroidales_noname-0.2045.92e-193.45e-18
genusBacteroidales_noname-0.2045.92e-193.45e-18
speciesBacteroidales_bacterium_ph8-0.2045.92e-193.45e-18
speciesWeissella_cibaria0.2011.69e-189.73e-18
speciesClostridiales_bacterium_1_7_47FAA0.2011.98e-181.13e-17
speciesBacteroides_uniformis-0.2012.05e-181.15e-17
genusEggerthella0.22.1e-181.17e-17
genusCoprobacter-0.22.76e-181.5e-17
speciesCoprobacter_fastidiosus-0.22.76e-181.5e-17
genusDorea-0.1985.29e-182.84e-17
genusMitsuokella-0.1986.3e-183.34e-17
speciesFusobacterium_varium0.1978.97e-184.7e-17
speciesFusobacterium_mortiferum0.1979.59e-184.97e-17
genusVeillonella0.1951.54e-177.9e-17
speciesEnterococcus_faecalis0.1951.72e-178.73e-17
speciesC2likevirus_unclassified-0.1933.58e-171.8e-16
orderLactobacillales0.1933.74e-171.86e-16
classBacilli0.1934.56e-172.24e-16
speciesRoseburia_hominis-0.1925.03e-172.45e-16
genusC2likevirus-0.191.25e-166.02e-16
speciesEubacterium_hallii-0.1882.17e-161.03e-15
speciesStreptococcus_infantarius0.1882.48e-161.17e-15
speciesEnterobacter_aerogenes0.1873.11e-161.45e-15
speciesClostridium_citroniae0.1856.47e-162.99e-15
speciesCoprococcus_catus-0.1849.31e-164.27e-15
genusRuminococcaceae_noname-0.1831.63e-157.33e-15
speciesRuminococcaceae_bacterium_D16-0.1831.63e-157.33e-15
speciesAnaerostipes_hadrus-0.1822.33e-151.04e-14
speciesLactobacillus_mucosae0.1796.21e-152.74e-14
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1797.19e-153.14e-14
genusFlavonifractor0.1771.3e-145.58e-14
speciesFlavonifractor_plautii0.1771.3e-145.58e-14
familyRikenellaceae-0.1771.34e-145.65e-14
genusAlistipes-0.1771.34e-145.65e-14
speciesOscillibacter_unclassified-0.1752.22e-149.27e-14
genusPyramidobacter0.1752.72e-141.11e-13
speciesPyramidobacter_piscolens0.1752.72e-141.11e-13
speciesStreptococcus_thermophilus-0.1752.72e-141.11e-13
phylumSynergistetes0.1752.89e-141.14e-13
classSynergistia0.1752.89e-141.14e-13
orderSynergistales0.1752.89e-141.14e-13
familySynergistaceae0.1752.89e-141.14e-13
familyOscillospiraceae-0.1734.23e-141.64e-13
genusOscillibacter-0.1734.23e-141.64e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1735.05e-141.94e-13
speciesAlistipes_senegalensis-0.1735.1e-141.94e-13
genusAnaerotruncus-0.1735.51e-142.08e-13
phylumFirmicutes-0.171.17e-134.38e-13
phylumVerrucomicrobia-0.1691.8e-136.44e-13
classVerrucomicrobiae-0.1691.8e-136.44e-13
orderVerrucomicrobiales-0.1691.8e-136.44e-13
familyVerrucomicrobiaceae-0.1691.8e-136.44e-13
genusAkkermansia-0.1691.8e-136.44e-13
speciesAkkermansia_muciniphila-0.1691.8e-136.44e-13
speciesAlistipes_shahii-0.1682.51e-138.91e-13
speciesCollinsella_aerofaciens-0.1665.12e-131.8e-12
genusOdoribacter-0.1649.88e-133.45e-12
speciesDorea_formicigenerans-0.1631.35e-124.69e-12
familyBacillales_noname0.1612.66e-129.1e-12
genusGemella0.1612.66e-129.1e-12
genusCollinsella-0.1612.82e-129.58e-12
speciesAlistipes_putredinis-0.163.19e-121.08e-11
speciesEnterococcus_faecium0.1585.95e-121.99e-11
speciesVeillonella_unclassified0.1586.92e-122.3e-11
speciesVeillonella_dispar0.1578.38e-122.77e-11
speciesBifidobacterium_dentium0.1561.17e-113.84e-11
speciesButyrivibrio_crossotus-0.1561.3e-114.23e-11
speciesOdoribacter_splanchnicus-0.1541.92e-116.21e-11
speciesStreptococcus_mitis_oralis_pneumoniae0.1523.91e-111.26e-10
speciesBifidobacterium_pseudocatenulatum0.1524.03e-111.29e-10
speciesPrevotella_buccae0.1524.17e-111.32e-10
speciesRuminococcus_sp_5_1_39BFAA-0.1514.77e-111.5e-10
speciesCoprococcus_sp_ART55_1-0.1515.78e-111.81e-10
speciesBacteroides_stercoris0.1516.08e-111.89e-10
speciesAnaerostipes_unclassified0.158.03e-112.48e-10
familySutterellaceae-0.1498.52e-112.61e-10
genusSolobacterium0.1491.06e-103.21e-10
speciesSolobacterium_moorei0.1491.06e-103.21e-10
genusPrevotella0.1481.45e-104.36e-10
speciesStreptococcus_salivarius0.1462.58e-107.71e-10
speciesMegamonas_rupellensis0.1452.94e-108.73e-10
speciesBacteroides_plebeius0.1453.4e-101e-09
speciesKlebsiella_sp_MS_92_30.1443.54e-101.04e-09
genusMorganella0.1443.71e-101.07e-09
speciesMorganella_morganii0.1443.71e-101.07e-09
genusClostridiales_noname0.1426.71e-101.93e-09
familyLactobacillaceae0.1427.28e-102.08e-09
speciesRuminococcus_lactaris-0.1427.63e-102.17e-09
genusLactobacillus0.141.19e-093.36e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.141.24e-093.48e-09
familyStreptococcaceae0.1372.72e-097.6e-09
orderBurkholderiales-0.1363.29e-099.13e-09
speciesMegamonas_hypermegale0.1363.52e-099.72e-09
genusCampylobacter0.1363.86e-091.06e-08
familySiphoviridae-0.1354.26e-091.16e-08
familyCampylobacteraceae0.1354.55e-091.23e-08
genusBlautia0.1354.61e-091.24e-08
speciesBacteroides_intestinalis0.1354.61e-091.24e-08
genusFaecalibacterium-0.1345.27e-091.4e-08
speciesFaecalibacterium_prausnitzii-0.1345.27e-091.4e-08
classEpsilonproteobacteria0.1337.37e-091.93e-08
orderCampylobacterales0.1337.37e-091.93e-08
familyPorphyromonadaceae-0.1337.68e-092e-08
classBetaproteobacteria-0.1338.66e-092.25e-08
orderBacillales0.1329.03e-092.33e-08
speciesMegasphaera_unclassified0.1321.05e-082.69e-08
speciesLactobacillus_fermentum0.131.59e-084.06e-08
speciesPrevotella_stercorea0.131.75e-084.44e-08
speciesVeillonella_atypica0.131.76e-084.44e-08
genusPeptostreptococcus0.1291.97e-084.95e-08
genusProteus0.1292.08e-085.19e-08
familyPeptostreptococcaceae0.1292.12e-085.27e-08
speciesHaemophilus_parainfluenzae0.1292.2e-085.44e-08
genusStreptococcus0.1292.39e-085.88e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1282.77e-086.77e-08
genusHaemophilus0.1282.79e-086.79e-08
orderPasteurellales0.1273.52e-088.48e-08
familyPasteurellaceae0.1273.52e-088.48e-08
speciesBlautia_hydrogenotrophica-0.1273.71e-088.89e-08
familyMyoviridae0.1264.38e-081.04e-07
speciesPrevotella_copri0.1264.73e-081.12e-07
speciesMethanobrevibacter_smithii-0.1265.1e-081.2e-07
speciesStreptococcus_lutetiensis0.1255.41e-081.27e-07
speciesParaprevotella_xylaniphila-0.1255.72e-081.34e-07
speciesLactobacillus_sanfranciscensis0.1246.78e-081.58e-07
speciesLeuconostoc_lactis0.1247.06e-081.63e-07
genusMethanobrevibacter-0.1238.69e-082e-07
speciesBacteroides_thetaiotaomicron0.1239.07e-082.08e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1239.94e-082.27e-07
speciesProteus_mirabilis0.1221.19e-072.7e-07
phylumEuryarchaeota-0.1211.54e-073.48e-07
speciesStreptococcus_gordonii0.1211.69e-073.8e-07
classMethanobacteria-0.122.13e-074.72e-07
orderMethanobacteriales-0.122.13e-074.72e-07
familyMethanobacteriaceae-0.122.13e-074.72e-07
speciesClostridium_clostridioforme0.122.17e-074.79e-07
speciesOdoribacter_unclassified-0.1192.61e-075.73e-07
speciesAlistipes_onderdonkii-0.1192.66e-075.81e-07
speciesEubacterium_ventriosum-0.1183e-076.53e-07
genusRuminococcus-0.1173.96e-078.57e-07
genusAggregatibacter0.1174.32e-079.31e-07
genusPeptostreptococcaceae_noname0.1147.93e-071.7e-06
speciesStreptococcus_australis0.1138.96e-071.91e-06
speciesStreptococcus_pasteurianus0.1121.13e-062.4e-06
speciesAggregatibacter_segnis0.1111.45e-063.07e-06
speciesPeptostreptococcus_stomatis0.111.76e-063.71e-06
familyLachnospiraceae-0.111.92e-064.03e-06
familyPropionibacteriaceae-0.112.02e-064.22e-06
speciesMegamonas_funiformis0.1092.33e-064.84e-06
speciesParaprevotella_unclassified-0.1092.44e-065.05e-06
speciesClostridium_bartlettii0.1082.81e-065.79e-06
genusParaprevotella-0.1082.83e-065.81e-06
speciesEnterobacteria_phage_HK5440.1083.09e-066.31e-06
speciesRoseburia_intestinalis-0.1073.26e-066.63e-06
speciesRuminococcus_champanellensis-0.1073.66e-067.41e-06
speciesGemella_morbillorum0.1064.54e-069.16e-06
genusAcidaminococcaceae_unclassified-0.1055.88e-061.18e-05
genusAnaerostipes-0.1045.95e-061.19e-05
familyActinomycetaceae0.1038.06e-061.6e-05
familyClostridiales_Family_XI_Incertae_Sedis0.1038.09e-061.6e-05
genusAdlercreutzia-0.1038.52e-061.68e-05
speciesAdlercreutzia_equolifaciens-0.1038.52e-061.68e-05
orderCoriobacteriales-0.1038.62e-061.68e-05
familyCoriobacteriaceae-0.1038.62e-061.68e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1038.64e-061.68e-05
speciesBacteroides_nordii0.1038.7e-061.68e-05
speciesOlsenella_unclassified-0.1011.1e-052.12e-05
speciesBifidobacterium_catenulatum-0.1011.25e-052.4e-05
familyClostridiales_noname0.11.55e-052.96e-05
speciesRuminococcus_obeum-0.0991.63e-053.1e-05
genusActinomyces0.0991.97e-053.73e-05
speciesParaprevotella_clara-0.0982.01e-053.79e-05
speciesCoprococcus_eutactus-0.0982.13e-054.01e-05
speciesStreptococcus_vestibularis0.0972.91e-055.45e-05
speciesAlistipes_indistinctus-0.0963.04e-055.67e-05
speciesLactobacillus_amylovorus0.0963.11e-055.78e-05
speciesCampylobacter_concisus0.0954.14e-057.66e-05
speciesParabacteroides_merdae-0.0944.46e-058.22e-05
speciesRothia_mucilaginosa0.0944.9e-058.96e-05
speciesRoseburia_unclassified-0.0944.9e-058.96e-05
speciesErysipelotrichaceae_bacterium_21_3-0.0935.93e-050.000108
speciesLachnospiraceae_bacterium_1_4_56FAA0.0926.32e-050.000115
speciesBacteroides_sp_3_1_190.0927.09e-050.000128
genusRoseburia-0.0917.91e-050.000143
familyVeillonellaceae0.0918.74e-050.000157
speciesBacteroides_salyersiae0.099.01e-050.000161
speciesAcidaminococcus_intestini0.099.47e-050.000169
speciesLactococcus_phage_P680-0.099.7e-050.000172
speciesPorphyromonas_uenonis0.090.0001060.000187
genusLambdalikevirus0.0890.0001150.000203
speciesClostridium_sp_L2_50-0.0880.0001340.000235
speciesAlistipes_sp_HGB5-0.0880.0001450.000253
speciesLactobacillus_plantarum0.0870.0001640.000286
speciesEggerthella_lenta0.0870.0001680.000292
speciesLactobacillus_crispatus0.0870.0001750.000303
speciesPropionibacterium_freudenreichii-0.0860.0001850.000319
genusSiphoviridae_noname-0.0860.0001930.000331
speciesEubacterium_eligens-0.0840.0002820.000482
speciesClostridium_asparagiforme0.0840.0002880.000491
genusCatenibacterium-0.0840.00030.000508
speciesCatenibacterium_mitsuokai-0.0840.00030.000508
speciesLactococcus_phage_936_sensu_lato-0.0830.000310.000521
speciesAlistipes_finegoldii-0.0830.000310.000521
speciesLactobacillus_acidophilus-0.0830.0003430.000574
speciesBacteroides_dorei-0.0830.0003450.000575
speciesBacteroides_coprocola0.0820.0003630.000603
familyMicrococcaceae0.0820.0003710.000614
genusRothia0.0820.0003930.000649
speciesHaemophilus_paraphrohaemolyticus0.0820.0003970.000653
speciesOscillibacter_sp_KLE_1745-0.0820.0004130.000677
speciesAlistipes_sp_AP11-0.0810.0004830.000789
speciesBacteroides_pectinophilus-0.080.0005530.0009
speciesStreptococcus_sanguinis0.0790.0005950.000965
orderCaudovirales-0.0790.0006060.00098
genusDialister-0.0790.0006350.00102
genusOlsenella-0.0790.0006380.00102
speciesBlautia_producta0.0790.0006390.00102
speciesBacteroides_xylanisolvens0.0790.0006710.00107
speciesLachnospiraceae_bacterium_5_1_57FAA0.0780.0007040.00112
speciesLactobacillus_vaginalis0.0780.0007310.00116
familyAcidaminococcaceae-0.0780.0007880.00124
speciesBacteroides_oleiciplenus0.0770.0008290.0013
speciesLactobacillus_oris0.0770.0008590.00135
speciesEubacterium_limosum0.0770.0009030.00141
speciesBacteroides_finegoldii0.0760.0009420.00147
speciesParabacteroides_goldsteinii0.0760.001030.0016
genusPhascolarctobacterium-0.0760.001050.00162
speciesPhascolarctobacterium_succinatutens-0.0760.001050.00162
genusLeuconostoc0.0750.001120.00172
speciesDialister_invisus-0.0750.001190.00182
speciesCoprobacillus_sp_29_10.0740.001370.00209
speciesMegasphaera_elsdenii0.0740.001380.0021
genusBifidobacterium-0.0740.001430.00217
orderActinomycetales0.0740.001470.00222
genusMyoviridae_noname0.0730.001620.00244
speciesCoprobacillus_sp_D60.0730.001640.00246
speciesClostridium_sp_ATCC_BAA_4420.0730.001640.00246
genusPorphyromonas0.0730.001680.00251
genusActinobacillus0.0720.001820.0027
speciesActinobacillus_unclassified0.0720.001820.0027
speciesBilophila_unclassified0.0720.001940.00287
genusBilophila0.0710.001980.00292
speciesEubacterium_biforme-0.0710.002040.003
orderBifidobacteriales-0.0710.002210.00323
familyBifidobacteriaceae-0.0710.002210.00323
speciesOscillibacter_sp_KLE_1728-0.0710.002250.00328
speciesBifidobacterium_animalis-0.070.002360.00343
speciesMethanobrevibacter_unclassified-0.070.002520.00365
genusParvimonas0.070.002590.00374
speciesParvimonas_unclassified0.070.002630.00378
speciesBacteroides_sp_1_1_6-0.0690.002670.00383
speciesAcidaminococcus_fermentans0.0690.0030.00429
phylumViruses_noname-0.0680.003440.00489
classViruses_noname-0.0680.003440.00489
genusTunalikevirus0.0670.003580.00507
speciesAcidaminococcus_unclassified-0.0670.00360.00509
genusPeptoniphilus0.0670.003610.00509
speciesBifidobacterium_breve0.0670.003630.0051
genusPropionibacterium-0.0670.003810.00534
speciesAlistipes_unclassified-0.0670.003870.0054
speciesLactobacillus_gasseri0.0660.004340.00604
familyOxalobacteraceae-0.0650.004630.00643
speciesAnaerotruncus_colihominis0.0650.005210.00721
genusParabacteroides-0.0640.005340.00737
genusOxalobacter-0.0640.00540.00741
speciesOxalobacter_formigenes-0.0640.00540.00741
phylumActinobacteria-0.0640.005530.00754
classActinobacteria-0.0640.005530.00754
speciesStreptococcus_mutans0.0630.006180.0084
speciesBacteroides_barnesiae-0.0630.006190.0084
speciesBilophila_wadsworthia0.0620.007020.00949
classDeltaproteobacteria0.0620.007620.0102
orderDesulfovibrionales0.0620.007620.0102
familyDesulfovibrionaceae0.0620.007620.0102
speciesParabacteroides_sp_D13-0.0610.008220.011
speciesKlebsiella_phage_KP360.060.009090.0121
speciesCollinsella_tanakaei0.060.009960.0132
speciesPorphyromonas_asaccharolytica0.0590.01020.0135
speciesHaemophilus_sputorum0.0590.01110.0147
speciesSutterella_parvirubra0.0590.01140.015
speciesBifidobacterium_longum-0.0580.01220.016
genusSutterellaceae_unclassified-0.0580.01260.0165
speciesLactococcus_phage_jm2-0.0570.01310.0171
speciesBifidobacterium_angulatum-0.0550.01680.0219
speciesRoseburia_inulinivorans-0.0550.01810.0235
speciesDesulfovibrio_piger-0.0540.01850.024
speciesLachnospiraceae_bacterium_1_1_57FAA0.0540.020.0259
speciesPrevotella_bivia0.0540.02050.0264
speciesLactococcus_phage_phi7-0.0530.02150.0277
speciesRuminococcus_bromii-0.0530.02210.0283
orderAeromonadales0.0530.02230.0285
speciesEubacterium_cylindroides-0.0530.02280.0291
classErysipelotrichia0.0520.02480.0314
orderErysipelotrichales0.0520.02480.0314
familyErysipelotrichaceae0.0520.02480.0314
speciesBacteroides_sp_2_1_22-0.0520.02530.0319
speciesDesulfovibrio_desulfuricans-0.050.03010.0379
familyBacteroidaceae0.0480.03980.0498
genusBacteroides0.0480.03980.0498
speciesHoldemania_unclassified-0.0470.04090.0511
speciesHoldemania_filiformis-0.0470.04160.0518
speciesHoldemania_sp_AP20.0440.05610.0697
speciesClostridium_sp_KLE_1755-0.0440.0570.0706
speciesLactococcus_phage_bIL67-0.0430.06230.077
speciesLactobacillus_ruminis-0.0430.06550.0807
speciesBacteroides_eggerthii0.0410.07710.0948
speciesBacteroides_salanitronis-0.0410.07750.095
speciesBacteroides_cellulosilyticus-0.0380.09860.121
speciesErysipelotrichaceae_bacterium_2_2_44A0.0380.0990.121
classNegativicutes0.0380.1010.123
orderSelenomonadales0.0380.1010.123
genusDesulfovibrio-0.0380.1020.123
speciesSubdoligranulum_sp_4_3_54A2FAA0.0360.1170.141
speciesLactococcus_lactis-0.0350.1270.153
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0350.1290.155
speciesCoriobacteriaceae_bacterium_phI-0.0350.1290.155
speciesTuricibacter_unclassified-0.0340.140.167
speciesPeptostreptococcus_anaerobius0.0330.1510.18
familyPrevotellaceae0.0320.1610.191
speciesLactobacillus_reuteri0.0320.1640.194
genusCoriobacteriaceae_noname-0.0320.1720.203
speciesBacteroides_coprophilus0.0310.1770.209
orderViruses_noname-0.0310.1780.21
speciesClostridium_spiroforme-0.0310.1840.216
speciesDorea_unclassified-0.0310.1850.217
speciesBacteroides_massiliensis0.030.1890.221
orderPseudomonadales0.030.2010.234
genusTuricibacter-0.0290.2070.241
speciesParabacteroides_johnsonii0.0280.2190.254
phylumBacteroidetes-0.0280.2260.26
classBacteroidia-0.0280.2260.26
orderBacteroidales-0.0280.2260.26
genusSlackia0.0280.2260.26
familyPodoviridae0.0280.2290.262
speciesEubacterium_dolichum0.0280.2290.262
genusBurkholderiales_noname0.0270.2440.277
speciesMitsuokella_multacida-0.0270.2440.277
speciesBurkholderiales_bacterium_1_1_470.0270.2440.277
genusAcidaminococcus0.0260.2520.285
speciesParabacteroides_unclassified0.0260.2540.287
speciesStreptococcus_parasanguinis0.0250.2730.308
familyBurkholderiales_noname0.0250.2810.316
speciesRuminococcus_sp_JC3040.0240.30.336
speciesPeptostreptococcaceae_noname_unclassified-0.0240.3050.341
genusLactococcus0.0230.3140.35
genusButyricicoccus0.0220.350.389
speciesButyricicoccus_pullicaecorum0.0220.350.389
speciesLactobacillus_casei_paracasei-0.0210.3690.409
genusErysipelotrichaceae_noname0.0210.3740.413
genusParasutterella0.020.3760.414
speciesParasutterella_excrementihominis0.020.3760.414
speciesLactobacillus_delbrueckii-0.020.380.417
speciesCollinsella_unclassified-0.020.3840.421
speciesCollinsella_intestinalis0.020.3860.422
speciesBacteroides_vulgatus-0.020.3940.429
genusHoldemania-0.0180.4310.469
speciesParabacteroides_sp_20_3-0.0170.4630.502
genusGordonibacter-0.0170.4720.51
speciesGordonibacter_pamelaeae-0.0170.4720.51
speciesLactobacillus_rhamnosus0.0160.4790.516
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0160.4910.528
genusStaphylococcus-0.0160.4970.533
speciesBacteroides_ovatus-0.0140.540.576
speciesErysipelotrichaceae_bacterium_3_1_530.0140.5410.576
genusClostridiaceae_noname0.0140.5430.576
genusLachnospiraceae_noname-0.0140.5430.576
speciesClostridiaceae_bacterium_JC1180.0140.5430.576
genusMethanosphaera-0.0130.5680.6
speciesMethanosphaera_stadtmanae-0.0130.5680.6
speciesBacteroides_caccae0.0120.6070.64
speciesBacteroides_clarus0.0120.6170.649
speciesEubacterium_sp_3_1_31-0.0110.6290.66
speciesDialister_succinatiphilus-0.0110.6310.66
speciesEggerthella_sp_1_3_56FAA-0.0090.7050.736
familyStaphylococcaceae-0.0080.7320.763
genusButyricimonas-0.0080.7390.767
speciesButyricimonas_synergistica-0.0080.7390.767
speciesSlackia_piriformis-0.0070.7610.788
speciesRuminococcus_torques0.0070.7630.788
speciesTuricibacter_sanguinis-0.0070.7680.791
speciesErysipelotrichaceae_bacterium_6_1_450.0070.770.792
speciesOdoribacter_laneus-0.0060.7860.807
familySuccinivibrionaceae-0.0060.7990.818
familyViruses_noname0.0050.8140.83
genusViruses_noname0.0050.8140.83
speciesBacteroides_fluxus0.0050.8250.839
speciesRuminococcus_callidus0.0040.8520.865
speciesParabacteroides_distasonis0.0020.9230.935
speciesBacteroides_sp_4_3_47FAA0.0010.9590.969
speciesStreptococcus_phage_Sfi21-0.0010.9750.981
genusSuccinatimonas-0.0010.9770.981
speciesSuccinatimonas_hippei-0.0010.9770.981
speciesBacteroides_faecis0.0010.9790.981
speciesBifidobacterium_bifidum0.00.9830.983
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.007880892880790.002662750317783.65838320029e-132860.93749
Liver cirrhosisChina1201140.03374371975310.006646672494190.00019793797135573019.2482
Crohns diseaseSpain17660.0294713347410.003677814589180.00115379720636434214.4372
Colorectal cancerAustria64350.04720332784760.01294052436770.030904285497119306.52998
Type II diabetesChina1831850.02832900762470.02118045614610.1151575777061016433.59
Type II diabetesSweden53920.006869179075470.007813124779620.6666327669252058369.702
Ulcerative colitisSpain78660.001399312765050.003677814589180.6705696758842316576.4168
Rheumatoid arthritisChina127980.01819631000490.01436580240360.8598235411892651388.415
ObesityDenmark1691230.003827838850560.0077075063010.9727492618262988598.2704
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382