MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-09 18:29:35 PST
Job id & description: 1637, 1227
Query type: protein
Count queries & homologs: 16, 57
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
locus_tag="XNC21263422CompleteK03327COG0534ProteobacteriaProteus100.0100.078.03
locus_tag="XNC21249398CompleteK03327COG0534ProteobacteriaProvidencia100.099.5578.48
locus_tag="XNC21557359CompleteK14260COG0582unknownunknown100.098.7878.47
locus_tag="XNC21248667CompleteK03327COG0534unknownunknown100.099.5573.54
locus_tag="XNC22982589CompleteK01491COG0190ProteobacteriaProteus98.2898.6290.21
locus_tag="XNC23017613CompleteK01491COG0190ProteobacteriaEnterobacter97.9498.9686.67
locus_tag="XNC22705313Lack 5'-endK01491COG0190ProteobacteriaKlebsiella98.2892.8685.66
locus_tag="XNC23065072CompleteK01491COG0190ProteobacteriaProvidencia97.94100.086.32
locus_tag="XNC23018237CompleteK01491COG0190ProteobacteriaEnterobacter98.2899.3185.66
locus_tag="XNC23009663CompleteK01491COG0190ProteobacteriaKlebsiella97.9498.9686.32
locus_tag="XNC23020610CompleteK01491COG0190ProteobacteriaEnterobacter98.2899.3185.31
locus_tag="XNC23009335CompleteK01491COG0190ProteobacteriaKlebsiella97.9498.9686.32
locus_tag="XNC23016298CompleteK01491COG0190ProteobacteriaEnterobacter98.2899.3185.31
locus_tag="XNC23018396CompleteK01491COG0190ProteobacteriaEnterobacter98.2899.3184.97
locus_tag="XNC22533057CompleteK01491COG0190ProteobacteriaEscherichia97.5988.7585.21
locus_tag="XNC23020827CompleteK01491COG0190ProteobacteriaCitrobacter97.9498.9684.91
locus_tag="XNC22792510CompleteK00228COG0408ProteobacteriaProteus100.0100.076.49
locus_tag="XNC23020651CompleteK01491COG0190ProteobacteriaCitrobacter97.5998.6185.21
locus_tag="XNC22748005CompleteK00228COG0408ProteobacteriaProvidencia100.099.3475.58
locus_tag="XNC23069376CompleteK01491COG0190Proteobacteriaunknown97.94100.082.46
locus_tag="XNC22751977CompleteK00228COG0408Proteobacteriaunknown100.099.0275.5
locus_tag="XNC22844874CompleteK00228COG0408ProteobacteriaCitrobacter99.0199.3375.59
locus_tag="XNC22844702CompleteK00228COG0408ProteobacteriaCitrobacter99.0199.3374.25
locus_tag="XNC22828903CompleteK00228COG0408ProteobacteriaEscherichia100.0100.073.18
locus_tag="XNC22844945CompleteK00228COG0408ProteobacteriaEscherichia99.0199.3373.24
locus_tag="XNC22829595CompleteK00228COG0408ProteobacteriaKlebsiella99.0199.3374.58
locus_tag="XNC22844650CompleteK00228COG0408ProteobacteriaKlebsiella99.0199.3374.92
locus_tag="XNC22844673CompleteK00228COG0408ProteobacteriaEscherichia99.0199.3372.91
locus_tag="XNC22842493CompleteK00228COG0408ProteobacteriaEnterobacter99.0199.3372.58
locus_tag="XNC22844783CompleteK00228COG0408ProteobacteriaEnterobacter99.0199.3372.91
locus_tag="XNC22828891CompleteK00228COG0408ProteobacteriaEnterobacter100.0100.072.19
locus_tag="XNC22841348CompleteK00228COG0408ProteobacteriaKlebsiella99.0199.3374.25
locus_tag="XNC22841659CompleteK00228COG0408ProteobacteriaEnterobacter99.0199.3374.25
locus_tag="XNC22918957Lack 5'-endK03733COG0582unknownunknown73.02100.072.88
locus_tag="XNC22842334CompleteK00228COG0408ProteobacteriaEnterobacter99.0199.3371.91
locus_tag="XNC22840439CompleteK00228COG0408ProteobacteriaEnterobacter99.0199.3372.24
locus_tag="XNC22845099CompleteK00228COG0408ProteobacteriaEnterobacter99.0199.3371.91
locus_tag="XNC23511024Lack 5'-endK01491COG0190Proteobacteriaunknown88.3299.6189.88
locus_tag="XNC22953291CompleteK01491COG0190unknownunknown97.5997.2675.0
locus_tag="XNC23655664Lack 3'-endK01491COG0190ProteobacteriaProteus86.25100.088.45
locus_tag="XNC22833557CompleteK00228COG0408ProteobacteriaKlebsiella99.0199.3373.91
locus_tag="XNC24164409Lack 3'-endK01491COG0190ProteobacteriaEnterobacter77.66100.087.17
locus_tag="XNC24211182CompleteunknownCOG1462Proteobacteriaunknown99.199.176.47
locus_tag="XNC24183651CompleteunknownCOG1462Proteobacteriaunknown97.7697.3275.23
locus_tag="XNC24195181CompleteunknownCOG1462unknownunknown92.8392.8375.85
locus_tag="XNC23910642CompleteunknownCOG1462ProteobacteriaProteus97.7691.9872.48
locus_tag="XNC25679736Lack 3'-endunknownCOG1462ProteobacteriaProteus73.5497.6271.34
locus_tag="XNC28536104Lack 3'-endK14761COG2501unknownunknown97.1497.1477.94
locus_tag="XNC28505728CompleteK14761COG2501Proteobacteriaunknown97.1497.1473.53
locus_tag="XNC28490970CompleteK14761COG2501ProteobacteriaProteus98.5798.5772.46
locus_tag="XNC28664800CompleteK07733COG3311unknownunknown86.7690.7771.19
locus_tag="XNC28687721CompleteK07733COG3311unknownunknown86.7690.7771.19
locus_tag="XNC28607356CompleteK07733COG3311ProteobacteriaEscherichia91.1892.5470.97
locus_tag="XNC28674676CompleteK07733COG3311ProteobacteriaEscherichia85.2989.2372.41
locus_tag="XNC28668742CompleteK07733COG3311ProteobacteriaShigella86.7690.7771.19
locus_tag="XNC28686213CompleteK07733COG3311unknownunknown85.2989.2370.69
locus_tag="XNC28844874Lack 5'-endK07733COG3311unknownunknown70.5978.6972.92
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.9150.00.0
orderEnterobacteriales0.9710.00.0
familyEnterobacteriaceae0.9710.00.0
genusEscherichia0.9060.00.0
speciesEscherichia_coli0.8810.00.0
phylumProteobacteria0.7172.06e-2951.62e-293
genusKlebsiella0.6193.4e-1982.29e-196
speciesKlebsiella_pneumoniae0.595.37e-1763.17e-174
speciesEscherichia_unclassified0.5731.22e-1636.4e-162
genusPantoea0.4561.12e-964.81e-95
speciesPantoea_unclassified0.4561.12e-964.81e-95
genusEnterobacter0.4325.05e-861.99e-84
speciesEnterobacter_cloacae0.4262.47e-838.97e-82
speciesRuminococcus_gnavus0.3595.22e-581.76e-56
familyFusobacteriaceae0.3513.14e-559.88e-54
genusCitrobacter0.3482.96e-548.73e-53
genusFusobacterium0.3451.73e-534.8e-52
phylumFusobacteria0.3452.48e-535.85e-52
classFusobacteriia0.3452.48e-535.85e-52
orderFusobacteriales0.3452.48e-535.85e-52
speciesCitrobacter_unclassified0.3377.05e-511.58e-49
speciesCitrobacter_freundii0.3313.51e-497.53e-48
speciesClostridium_nexile0.3221.72e-463.53e-45
speciesSubdoligranulum_unclassified-0.3183.84e-457.55e-44
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3131.01e-431.91e-42
genusSubdoligranulum-0.3112.54e-434.61e-42
speciesEubacterium_siraeum-0.2933.12e-385.45e-37
genusButyrivibrio-0.2919.75e-381.64e-36
genusCoprobacillus0.2892.34e-373.81e-36
speciesKlebsiella_oxytoca0.2861.74e-362.74e-35
speciesAnaerotruncus_unclassified-0.2781.21e-341.84e-33
speciesClostridium_bolteae0.2772.7e-343.98e-33
speciesCoprobacillus_unclassified0.271.34e-321.92e-31
speciesClostridium_hathewayi0.2642.74e-313.8e-30
speciesKlebsiella_unclassified0.2643.45e-314.65e-30
speciesClostridium_ramosum0.2589.45e-301.24e-28
genusWeissella0.2553.48e-294.44e-28
genusPseudoflavonifractor-0.2531.09e-281.32e-27
speciesPseudoflavonifractor_capillosus-0.2531.09e-281.32e-27
genusCoprococcus-0.2447.57e-278.93e-26
genusEnterococcus0.2414.76e-265.44e-25
speciesEubacterium_ramulus-0.2414.84e-265.44e-25
familyEnterococcaceae0.2391.17e-251.28e-24
genusBarnesiella-0.2381.62e-251.7e-24
speciesBarnesiella_intestinihominis-0.2381.62e-251.7e-24
speciesWeissella_confusa0.2381.97e-252.02e-24
familyRuminococcaceae-0.237.77e-247.8e-23
speciesBifidobacterium_adolescentis-0.2291.3e-231.28e-22
speciesClostridium_symbiosum0.2281.72e-231.66e-22
speciesFusobacterium_ulcerans0.2272.94e-232.78e-22
speciesVeillonella_parvula0.2257.69e-237.12e-22
speciesSutterella_wadsworthensis-0.2231.36e-221.21e-21
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2231.36e-221.21e-21
speciesClostridium_perfringens0.2231.76e-221.54e-21
speciesEubacterium_rectale-0.2213.29e-222.82e-21
genusMegasphaera0.2213.86e-223.25e-21
speciesClostridium_leptum-0.226.33e-225.24e-21
speciesButyrivibrio_unclassified-0.227.01e-225.7e-21
speciesBacteroides_fragilis0.2198.36e-226.69e-21
speciesStreptococcus_anginosus0.2199.18e-227.22e-21
classClostridia-0.2181.32e-211e-20
orderClostridiales-0.2181.32e-211e-20
familyClostridiaceae0.2172e-211.5e-20
genusClostridium0.2154.89e-213.61e-20
speciesLactobacillus_salivarius0.2141.01e-207.33e-20
speciesCoprococcus_comes-0.2131.26e-209.01e-20
speciesEggerthella_unclassified0.2122.31e-201.63e-19
familyLeuconostocaceae0.2112.5e-201.74e-19
genusEubacterium-0.2112.93e-202e-19
familyEubacteriaceae-0.2113.02e-202.04e-19
genusVeillonella0.2113.11e-202.07e-19
speciesBacteroides_uniformis-0.2113.21e-202.1e-19
genusSutterella-0.2113.27e-202.11e-19
speciesMitsuokella_unclassified-0.2113.33e-202.12e-19
familyBacteroidales_noname-0.213.9e-202.39e-19
genusBacteroidales_noname-0.213.9e-202.39e-19
speciesBacteroidales_bacterium_ph8-0.213.9e-202.39e-19
speciesLactococcus_garvieae0.2088.58e-205.19e-19
genusCoprobacter-0.2081.02e-196.02e-19
speciesCoprobacter_fastidiosus-0.2081.02e-196.02e-19
speciesMegasphaera_micronuciformis0.2081.08e-196.27e-19
speciesFusobacterium_nucleatum0.2081.09e-196.27e-19
speciesDorea_longicatena-0.2045.42e-193.08e-18
speciesMegamonas_unclassified0.2036.57e-193.69e-18
speciesFusobacterium_mortiferum0.2037.37e-194.09e-18
genusMegamonas0.2038.29e-194.55e-18
genusEggerthella0.2011.64e-188.9e-18
genusMitsuokella-0.22.07e-181.11e-17
speciesFusobacterium_varium0.1977.8e-184.14e-17
speciesC2likevirus_unclassified-0.1979.14e-184.79e-17
speciesWeissella_cibaria0.1961.28e-176.64e-17
genusDorea-0.1942.91e-171.49e-16
genusC2likevirus-0.1942.95e-171.5e-16
speciesStreptococcus_infantarius0.1933.65e-171.83e-16
classBacilli0.1933.9e-171.94e-16
speciesRoseburia_hominis-0.1934.04e-171.97e-16
orderLactobacillales0.1934.05e-171.97e-16
speciesClostridiales_bacterium_1_7_47FAA0.1934.26e-172.02e-16
genusRuminococcaceae_noname-0.1934.28e-172.02e-16
speciesRuminococcaceae_bacterium_D16-0.1934.28e-172.02e-16
speciesEnterococcus_faecalis0.1925.86e-172.74e-16
speciesEnterobacter_aerogenes0.1917.75e-173.59e-16
speciesEubacterium_hallii-0.1882.09e-169.58e-16
speciesOscillibacter_unclassified-0.1882.65e-161.2e-15
familyRikenellaceae-0.1864.41e-161.96e-15
genusAlistipes-0.1864.41e-161.96e-15
genusAnaerotruncus-0.1865.17e-162.28e-15
familyOscillospiraceae-0.1856.22e-162.69e-15
genusOscillibacter-0.1856.22e-162.69e-15
speciesLactobacillus_mucosae0.1841.08e-154.63e-15
genusFlavonifractor0.184.09e-151.72e-14
speciesFlavonifractor_plautii0.184.09e-151.72e-14
speciesAlistipes_senegalensis-0.184.73e-151.98e-14
speciesClostridium_citroniae0.1795.99e-152.48e-14
speciesCoprococcus_catus-0.1796.75e-152.77e-14
speciesAnaerostipes_hadrus-0.1771.28e-145.21e-14
genusOdoribacter-0.1761.81e-147.3e-14
speciesStreptococcus_thermophilus-0.1752.69e-141.08e-13
speciesAlistipes_shahii-0.1743.3e-141.31e-13
phylumVerrucomicrobia-0.1743.54e-141.34e-13
classVerrucomicrobiae-0.1743.54e-141.34e-13
orderVerrucomicrobiales-0.1743.54e-141.34e-13
familyVerrucomicrobiaceae-0.1743.54e-141.34e-13
genusAkkermansia-0.1743.54e-141.34e-13
speciesAkkermansia_muciniphila-0.1743.54e-141.34e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1743.93e-141.47e-13
speciesVeillonella_unclassified0.1734.54e-141.69e-13
phylumFirmicutes-0.171.47e-135.42e-13
speciesButyrivibrio_crossotus-0.1691.75e-136.4e-13
familyBacillales_noname0.1682.49e-138.97e-13
genusGemella0.1682.49e-138.97e-13
speciesBifidobacterium_dentium0.1682.58e-139.23e-13
genusPyramidobacter0.1673.83e-131.35e-12
speciesPyramidobacter_piscolens0.1673.83e-131.35e-12
speciesOdoribacter_splanchnicus-0.1657.18e-132.51e-12
speciesAlistipes_putredinis-0.1649.03e-133.13e-12
phylumSynergistetes0.1649.96e-133.36e-12
classSynergistia0.1649.96e-133.36e-12
orderSynergistales0.1649.96e-133.36e-12
familySynergistaceae0.1649.96e-133.36e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1621.89e-126.33e-12
speciesVeillonella_dispar0.1622.13e-127.08e-12
speciesCollinsella_aerofaciens-0.1612.17e-127.16e-12
speciesBifidobacterium_pseudocatenulatum0.1612.92e-129.57e-12
speciesEnterococcus_faecium0.1595.41e-121.76e-11
speciesBacteroides_stercoris0.1586.03e-121.95e-11
speciesDorea_formicigenerans-0.1542.17e-116.97e-11
speciesStreptococcus_mitis_oralis_pneumoniae0.1533.17e-111.01e-10
genusCollinsella-0.1523.52e-111.12e-10
speciesPrevotella_buccae0.1515.3e-111.66e-10
speciesStreptococcus_salivarius0.1515.32e-111.66e-10
speciesCoprococcus_sp_ART55_1-0.1491.01e-103.14e-10
genusMorganella0.1481.17e-103.59e-10
speciesMorganella_morganii0.1481.17e-103.59e-10
familySutterellaceae-0.1471.51e-104.6e-10
genusSolobacterium0.1471.68e-105.05e-10
speciesSolobacterium_moorei0.1471.68e-105.05e-10
familyLactobacillaceae0.1462.07e-106.18e-10
speciesKlebsiella_sp_MS_92_30.1462.37e-107.04e-10
speciesBacteroides_plebeius0.1462.42e-107.14e-10
genusPrevotella0.1453.23e-109.47e-10
familyPorphyromonadaceae-0.1453.28e-109.56e-10
genusLactobacillus0.1444.12e-101.19e-09
speciesAnaerostipes_unclassified0.1435.37e-101.55e-09
orderBacillales0.1426.85e-101.96e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1419.72e-102.76e-09
genusProteus0.141.15e-093.25e-09
familyStreptococcaceae0.141.22e-093.43e-09
speciesMegamonas_rupellensis0.141.31e-093.66e-09
speciesMethanobrevibacter_smithii-0.1391.44e-094e-09
speciesRuminococcus_lactaris-0.1391.48e-094.09e-09
familySiphoviridae-0.1391.53e-094.2e-09
familyPeptostreptococcaceae0.1391.62e-094.42e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1381.98e-095.37e-09
speciesHaemophilus_parainfluenzae0.1382.09e-095.64e-09
speciesRuminococcus_sp_5_1_39BFAA-0.1382.26e-096.06e-09
genusMethanobrevibacter-0.1372.65e-097.07e-09
genusHaemophilus0.1372.82e-097.48e-09
orderBurkholderiales-0.1363.25e-098.57e-09
orderPasteurellales0.1363.82e-099.96e-09
familyPasteurellaceae0.1363.82e-099.96e-09
phylumEuryarchaeota-0.1354.53e-091.17e-08
speciesPrevotella_stercorea0.1345.94e-091.53e-08
classMethanobacteria-0.1346.78e-091.72e-08
orderMethanobacteriales-0.1346.78e-091.72e-08
familyMethanobacteriaceae-0.1346.78e-091.72e-08
speciesLactobacillus_fermentum0.1336.83e-091.72e-08
speciesVeillonella_atypica0.1337.56e-091.9e-08
speciesMegasphaera_unclassified0.1338.51e-092.13e-08
genusStreptococcus0.1328.92e-092.21e-08
speciesMegamonas_hypermegale0.1328.93e-092.21e-08
genusCampylobacter0.1329.48e-092.33e-08
familyMyoviridae0.1321.13e-082.76e-08
genusPeptostreptococcus0.1311.25e-083.04e-08
classBetaproteobacteria-0.1311.31e-083.17e-08
classEpsilonproteobacteria0.1311.38e-083.31e-08
orderCampylobacterales0.1311.38e-083.31e-08
familyCampylobacteraceae0.1311.43e-083.41e-08
genusClostridiales_noname0.1311.45e-083.44e-08
speciesParaprevotella_xylaniphila-0.131.54e-083.63e-08
genusBlautia0.131.78e-084.18e-08
genusFaecalibacterium-0.1292.18e-085.07e-08
speciesFaecalibacterium_prausnitzii-0.1292.18e-085.07e-08
speciesAlistipes_onderdonkii-0.1292.43e-085.62e-08
speciesProteus_mirabilis0.1282.66e-086.12e-08
speciesBlautia_hydrogenotrophica-0.1282.84e-086.51e-08
speciesOdoribacter_unclassified-0.1264.49e-081.02e-07
speciesPrevotella_copri0.1264.79e-081.09e-07
speciesBacteroides_intestinalis0.1255.86e-081.32e-07
speciesLeuconostoc_lactis0.1247.07e-081.59e-07
speciesLactobacillus_sanfranciscensis0.1247.1e-081.59e-07
speciesStreptococcus_lutetiensis0.1247.35e-081.64e-07
genusPeptostreptococcaceae_noname0.1248.25e-081.83e-07
speciesEubacterium_ventriosum-0.1221.08e-072.38e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1221.1e-072.41e-07
speciesStreptococcus_gordonii0.1211.56e-073.41e-07
speciesClostridium_bartlettii0.121.84e-074e-07
speciesStreptococcus_australis0.122.09e-074.53e-07
genusAggregatibacter0.1192.45e-075.28e-07
speciesClostridium_clostridioforme0.1156.42e-071.38e-06
genusRuminococcus-0.1156.69e-071.43e-06
speciesBacteroides_thetaiotaomicron0.1147.37e-071.57e-06
speciesAlistipes_indistinctus-0.1139.28e-071.96e-06
familyActinomycetaceae0.1121.12e-062.36e-06
speciesPeptostreptococcus_stomatis0.1121.16e-062.43e-06
speciesParaprevotella_unclassified-0.1121.2e-062.51e-06
genusParaprevotella-0.1121.32e-062.74e-06
speciesAggregatibacter_segnis0.1111.47e-063.04e-06
speciesStreptococcus_pasteurianus0.1111.56e-063.22e-06
speciesGemella_morbillorum0.1111.64e-063.37e-06
familyPropionibacteriaceae-0.1092.12e-064.33e-06
speciesEnterobacteria_phage_HK5440.1082.67e-065.43e-06
speciesRuminococcus_champanellensis-0.1082.84e-065.75e-06
speciesMegamonas_funiformis0.1083.1e-066.25e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1083.12e-066.27e-06
genusActinomyces0.1073.19e-066.38e-06
speciesRoseburia_unclassified-0.1073.9e-067.77e-06
speciesBacteroides_nordii0.1064e-067.93e-06
genusAcidaminococcaceae_unclassified-0.1055.17e-061.02e-05
familyLachnospiraceae-0.1055.92e-061.16e-05
speciesRothia_mucilaginosa0.1046.93e-061.36e-05
speciesParaprevotella_clara-0.1046.97e-061.36e-05
genusAnaerostipes-0.1037.97e-061.55e-05
speciesStreptococcus_vestibularis0.1029.59e-061.86e-05
speciesErysipelotrichaceae_bacterium_21_3-0.11.45e-052.79e-05
speciesCampylobacter_concisus0.11.56e-052.99e-05
speciesCoprococcus_eutactus-0.11.57e-053e-05
genusAdlercreutzia-0.0991.92e-053.64e-05
speciesAdlercreutzia_equolifaciens-0.0991.92e-053.64e-05
speciesOlsenella_unclassified-0.0982.01e-053.79e-05
speciesRuminococcus_obeum-0.0982.11e-053.97e-05
speciesLactobacillus_amylovorus0.0972.5e-054.68e-05
speciesRoseburia_intestinalis-0.0972.58e-054.81e-05
familyVeillonellaceae0.0972.73e-055.07e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0962.94e-055.44e-05
speciesBifidobacterium_catenulatum-0.0963.17e-055.84e-05
speciesAlistipes_finegoldii-0.0953.67e-056.74e-05
speciesBacteroides_coprocola0.0944.54e-058.31e-05
familyMicrococcaceae0.0944.74e-058.64e-05
genusLambdalikevirus0.0944.85e-058.8e-05
genusRothia0.0945.05e-059.13e-05
orderCoriobacteriales-0.0935.2e-059.33e-05
familyCoriobacteriaceae-0.0935.2e-059.33e-05
familyClostridiales_noname0.0935.27e-059.42e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.0935.53e-059.85e-05
speciesParabacteroides_merdae-0.0926.58e-050.000117
speciesLactobacillus_plantarum0.0917.73e-050.000136
speciesAlistipes_sp_HGB5-0.0917.73e-050.000136
speciesBacteroides_sp_3_1_190.0918.52e-050.000149
genusCatenibacterium-0.0890.0001210.000211
speciesCatenibacterium_mitsuokai-0.0890.0001210.000211
speciesAcidaminococcus_intestini0.0880.0001290.000224
speciesOscillibacter_sp_KLE_1745-0.0880.0001390.00024
speciesHaemophilus_paraphrohaemolyticus0.0880.0001430.000246
speciesBlautia_producta0.0870.0001570.000269
speciesLactobacillus_vaginalis0.0870.0001580.00027
speciesBacteroides_salyersiae0.0870.0001690.000288
speciesLactococcus_phage_936_sensu_lato-0.0870.0001780.000302
speciesStreptococcus_sanguinis0.0860.0001870.000316
speciesClostridium_sp_L2_50-0.0860.0001880.000317
familyAcidaminococcaceae-0.0860.000190.000319
speciesBacteroides_pectinophilus-0.0860.0001930.000323
speciesAlistipes_sp_AP11-0.0860.0001990.000332
speciesLactococcus_phage_P680-0.0860.00020.000332
genusSiphoviridae_noname-0.0860.0002010.000333
speciesEubacterium_eligens-0.0860.0002070.000342
speciesLactobacillus_crispatus0.0850.0002150.000354
orderActinomycetales0.0840.000270.000442
speciesEubacterium_limosum0.0840.0002970.000485
genusPhascolarctobacterium-0.0830.0003130.000508
speciesPhascolarctobacterium_succinatutens-0.0830.0003130.000508
speciesLactobacillus_acidophilus-0.0830.0003280.00053
speciesLachnospiraceae_bacterium_5_1_57FAA0.0830.0003440.000554
speciesMethanobrevibacter_unclassified-0.0830.0003520.000565
speciesEggerthella_lenta0.0820.0003740.000598
speciesLactobacillus_gasseri0.0820.0003840.000612
speciesPorphyromonas_uenonis0.0820.0003930.000625
speciesBacteroides_oleiciplenus0.0820.00040.000634
speciesBacteroides_finegoldii0.080.0005010.000791
speciesBacteroides_dorei-0.080.0005370.000845
familyOxalobacteraceae-0.080.0005710.000895
genusLeuconostoc0.0790.0006120.000957
genusRoseburia-0.0790.0006260.000975
speciesMegasphaera_elsdenii0.0790.0006350.000986
orderCaudovirales-0.0790.000640.00099
speciesLactobacillus_oris0.0790.0006450.000995
genusParvimonas0.0790.0006660.00102
genusActinobacillus0.0790.0006730.00103
speciesActinobacillus_unclassified0.0790.0006730.00103
speciesParvimonas_unclassified0.0790.0006750.00103
genusOxalobacter-0.0780.0007540.00114
speciesOxalobacter_formigenes-0.0780.0007540.00114
genusParabacteroides-0.0760.0009870.00149
genusMyoviridae_noname0.0760.001080.00162
speciesStreptococcus_mutans0.0750.001110.00166
genusOlsenella-0.0750.001130.00169
speciesPropionibacterium_freudenreichii-0.0750.001250.00186
speciesEubacterium_biforme-0.0740.001290.00191
speciesCoprobacillus_sp_29_10.0730.001540.00228
speciesBifidobacterium_animalis-0.0730.00160.00236
speciesBilophila_unclassified0.0730.001620.00238
genusBilophila0.0720.001770.00259
speciesCoprobacillus_sp_D60.0720.001820.00266
genusPeptoniphilus0.0720.001870.00272
genusDialister-0.0710.002170.00315
speciesClostridium_sp_ATCC_BAA_4420.070.002320.00336
speciesBacteroides_xylanisolvens0.070.002390.00345
genusPorphyromonas0.070.002440.00351
speciesOscillibacter_sp_KLE_1728-0.070.00260.00373
speciesParabacteroides_goldsteinii0.0690.002960.00423
speciesBifidobacterium_angulatum-0.0680.003050.00435
speciesClostridium_asparagiforme0.0680.003180.00452
speciesAlistipes_unclassified-0.0680.003390.00481
genusTunalikevirus0.0670.003510.00495
speciesAcidaminococcus_fermentans0.0670.003510.00495
speciesDialister_invisus-0.0660.004330.00608
speciesParabacteroides_sp_D13-0.0660.00460.00644
genusSutterellaceae_unclassified-0.0640.005270.00736
speciesBifidobacterium_breve0.0640.00530.00738
speciesAcidaminococcus_unclassified-0.0640.005390.00748
speciesCollinsella_tanakaei0.0630.006070.0084
speciesLactococcus_phage_jm2-0.0630.006660.00919
genusBifidobacterium-0.0630.006740.00927
speciesHaemophilus_sputorum0.0620.00750.0103
phylumViruses_noname-0.0610.007920.0108
classViruses_noname-0.0610.007920.0108
genusPropionibacterium-0.0610.00820.0112
speciesBacteroides_barnesiae-0.0610.00840.0114
speciesHoldemania_filiformis-0.0610.008550.0116
speciesKlebsiella_phage_KP360.060.009030.0122
classDeltaproteobacteria0.060.009610.0128
orderDesulfovibrionales0.060.009610.0128
familyDesulfovibrionaceae0.060.009610.0128
orderBifidobacteriales-0.060.009750.013
familyBifidobacteriaceae-0.060.009750.013
speciesBilophila_wadsworthia0.0590.01070.0142
speciesRuminococcus_bromii-0.0590.01080.0143
speciesBacteroides_sp_1_1_6-0.0590.0110.0145
speciesDesulfovibrio_desulfuricans-0.0580.01140.015
speciesAnaerotruncus_colihominis0.0570.01340.0176
speciesDesulfovibrio_piger-0.0570.01370.0179
speciesEubacterium_cylindroides-0.0560.01560.0203
speciesBacteroides_sp_2_1_22-0.0550.01820.0237
speciesLachnospiraceae_bacterium_1_1_57FAA0.0540.01910.0248
speciesSutterella_parvirubra0.0540.01950.0252
speciesPorphyromonas_asaccharolytica0.0530.0210.0271
phylumActinobacteria-0.0530.02220.0285
classActinobacteria-0.0530.02220.0285
speciesBifidobacterium_longum-0.0510.02650.0339
speciesPrevotella_bivia0.0510.0270.0344
orderAeromonadales0.0510.02840.0361
speciesLactococcus_phage_phi7-0.050.03020.0383
speciesLactobacillus_ruminis-0.0490.03350.0424
speciesHoldemania_unclassified-0.0470.04060.0512
speciesBacteroides_cellulosilyticus-0.0470.04420.0556
familyBacteroidaceae0.0460.0450.0563
genusBacteroides0.0460.0450.0563
classErysipelotrichia0.0460.04790.0595
orderErysipelotrichales0.0460.04790.0595
familyErysipelotrichaceae0.0460.04790.0595
genusDesulfovibrio-0.0440.05460.0676
speciesHoldemania_sp_AP20.0430.06140.0759
speciesLactococcus_phage_bIL67-0.0420.07040.0868
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0420.0710.0873
speciesBacteroides_eggerthii0.0420.07150.0877
speciesLactococcus_lactis-0.0410.07510.0918
speciesRoseburia_inulinivorans-0.0390.09530.116
speciesBacteroides_salanitronis-0.0380.09860.12
speciesPeptostreptococcus_anaerobius0.0370.1130.137
speciesDorea_unclassified-0.0360.1150.139
classNegativicutes0.0350.1260.152
orderSelenomonadales0.0350.1260.152
speciesClostridium_sp_KLE_1755-0.0350.130.156
speciesLactobacillus_reuteri0.0350.1340.161
speciesBacteroides_coprophilus0.0340.1390.166
phylumBacteroidetes-0.0340.1410.168
classBacteroidia-0.0340.1420.168
orderBacteroidales-0.0340.1420.168
speciesErysipelotrichaceae_bacterium_2_2_44A0.0340.1430.169
speciesSubdoligranulum_sp_4_3_54A2FAA0.0330.1530.181
genusHoldemania-0.0320.1640.193
speciesCoriobacteriaceae_bacterium_phI-0.0320.1640.193
genusSlackia0.0320.1680.197
familyPodoviridae0.0320.1710.2
speciesEubacterium_dolichum0.0310.1810.211
speciesBacteroides_massiliensis0.030.1940.226
genusCoriobacteriaceae_noname-0.0290.2150.249
speciesClostridium_spiroforme-0.0280.2210.256
speciesTuricibacter_unclassified-0.0280.2290.264
speciesStreptococcus_parasanguinis0.0280.2310.266
speciesCollinsella_intestinalis0.0280.2340.269
orderPseudomonadales0.0270.2420.277
genusAcidaminococcus0.0260.2540.29
familyPrevotellaceae0.0260.2560.292
speciesRuminococcus_sp_JC3040.0260.2670.304
speciesMitsuokella_multacida-0.0250.2760.313
speciesParabacteroides_johnsonii0.0250.2840.321
orderViruses_noname-0.0240.2940.332
genusTuricibacter-0.0230.3230.364
speciesPeptostreptococcaceae_noname_unclassified-0.0230.3240.364
genusGordonibacter-0.0210.3580.4
speciesGordonibacter_pamelaeae-0.0210.3580.4
speciesLactobacillus_rhamnosus0.020.3890.434
speciesParabacteroides_unclassified0.0190.4010.446
speciesLactobacillus_casei_paracasei-0.0190.4020.446
speciesEubacterium_sp_3_1_31-0.0190.4030.447
genusLactococcus0.0190.4070.449
speciesErysipelotrichaceae_bacterium_6_1_450.0190.4070.449
genusBurkholderiales_noname0.0180.4310.473
speciesBurkholderiales_bacterium_1_1_470.0180.4310.473
speciesBacteroides_vulgatus-0.0180.4380.48
genusMethanosphaera-0.0180.4410.481
speciesMethanosphaera_stadtmanae-0.0180.4410.481
speciesParabacteroides_sp_20_3-0.0160.4880.53
genusButyricicoccus0.0160.490.53
speciesButyricicoccus_pullicaecorum0.0160.490.53
genusParasutterella0.0160.4920.53
speciesParasutterella_excrementihominis0.0160.4920.53
familyBurkholderiales_noname0.0160.4970.534
genusErysipelotrichaceae_noname0.0150.5090.546
genusLachnospiraceae_noname-0.0150.5170.553
familyViruses_noname0.0150.5210.554
genusViruses_noname0.0150.5210.554
speciesCollinsella_unclassified-0.0150.5210.554
speciesBacteroides_ovatus-0.0140.5340.566
speciesLactobacillus_delbrueckii-0.0140.5570.589
speciesErysipelotrichaceae_bacterium_3_1_530.0130.5730.605
genusButyricimonas-0.0130.5790.609
speciesButyricimonas_synergistica-0.0130.5790.609
genusStaphylococcus-0.0120.6010.63
speciesBacteroides_clarus0.0120.6170.646
familySuccinivibrionaceae-0.010.6570.686
speciesDialister_succinatiphilus-0.010.660.688
speciesRuminococcus_callidus0.0090.7060.734
speciesBacteroides_caccae0.0080.720.747
speciesBifidobacterium_bifidum0.0080.7230.748
speciesBacteroides_sp_4_3_47FAA-0.0080.7320.756
speciesBacteroides_faecis-0.0060.7860.81
speciesOdoribacter_laneus-0.0060.8010.824
speciesEggerthella_sp_1_3_56FAA-0.0050.8190.84
speciesRuminococcus_torques-0.0050.8270.847
genusSuccinatimonas-0.0050.8310.847
speciesSuccinatimonas_hippei-0.0050.8310.847
genusClostridiaceae_noname0.0040.8470.86
speciesClostridiaceae_bacterium_JC1180.0040.8470.86
familyStaphylococcaceae-0.0040.8650.876
speciesSlackia_piriformis-0.0030.8810.89
speciesBacteroides_fluxus0.0030.9010.909
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0030.9110.917
speciesTuricibacter_sanguinis0.0020.9260.93
speciesParabacteroides_distasonis-0.0020.9290.931
speciesStreptococcus_phage_Sfi21-0.0010.9540.954
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.01625457355470.004992238444728.51662237486e-125141.68486
Liver cirrhosisChina1201140.08018367037940.01402920490970.000134369467394539318.1162
Crohns diseaseSpain17660.05773449470660.00892951590350.00188434592735507216.8645
Type II diabetesChina1831850.05885931898840.04707053308770.1302031968341076535.5762
Colorectal cancerAustria64350.1019336054110.0272833916490.139068712366651922.0564
Ulcerative colitisSpain78660.003321449038470.00892951590350.176339557136983432.4405
ObesityDenmark1691230.006979396828760.01533444015890.4339645895651784158.6663
Type II diabetesSweden53920.01701744202060.01533884062550.737287142042247976.1226
Rheumatoid arthritisChina127980.04067208871730.03151807846960.8598235411892651388.415
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382