MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-09 22:35:52 PST
Job id & description: 1641, hpdB
Query type: protein
Count queries & homologs: 1, 43
Min % identity & max e-value: 30%, 1e-40
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
hpdB175905CompleteK00656COG1882unknownunknown99.2299.6761.82
hpdB164795CompleteK00656COG1882unknownunknown99.2297.4161.6
hpdB180049CompleteK00656COG1882FirmicutesBlautia99.099.2255.88
hpdB180184CompleteK00656COG1882unknownunknown95.1295.5458.19
hpdB179656CompleteK00656COG1882FirmicutesClostridium99.4599.5556.08
hpdB183343CompleteK00656COG1882unknownunknown98.8999.7855.98
hpdB172831Lack 5'-endK00656COG1882FirmicutesBlautia99.2299.0155.76
hpdB179340CompleteK00656COG1882unknownunknown99.7899.8956.15
hpdB177259CompleteK00656COG1882Actinobacteriaunknown99.3399.6755.22
hpdB178042CompleteK00656COG1882FirmicutesClostridium95.995.7854.91
hpdB180028CompleteK00656COG1882unknownunknown99.4599.7855.01
hpdB298923Lack 5'-endK00656COG1882unknownunknown84.3799.8756.09
hpdB187465CompleteK00656COG1882unknownunknown96.4596.6144.14
hpdB190312CompleteK00656COG1882FirmicutesClostridium96.4597.0543.33
hpdB192322CompleteK00656COG1882Actinobacteriaunknown96.7896.8136.79
hpdB183173CompleteK00656COG1882FirmicutesClostridium97.0195.436.51
hpdB191053CompleteK00656COG1882FirmicutesClostridium96.7895.9135.97
hpdB257612CompleteK00656COG1882ProteobacteriaBilophila82.3787.1630.41
hpdB259869CompleteK00656COG1882unknownunknown81.9386.8831.18
hpdB245013CompleteK00656COG1882ProteobacteriaBilophila81.684.7930.32
hpdB244993CompleteK00656COG1882ProteobacteriaDesulfovibrio80.3883.4430.23
hpdB258836CompleteK00656COG1882unknownunknown81.9386.8930.21
hpdB268799CompleteK00656COG1882unknownunknown75.8381.0432.22
hpdB228928Lack 5'-endK00656COG1882ProteobacteriaDesulfovibrio81.4983.1731.12
hpdB198088CompleteK00656COG1882unknownunknown75.6173.0231.16
hpdB358882Lack 5'-endK00656COG1882Firmicutesunknown80.0493.8630.37
hpdB440415Lack 5'-endK00656COG1882unknownunknown74.6193.9930.72
hpdB257100CompleteK00656COG1882Firmicutesunknown70.1874.8430.82
hpdB242377CompleteK00656COG1882Proteobacteriaunknown75.8378.8231.21
hpdB264430CompleteK00656COG1882unknownunknown70.5174.7231.2
hpdB256968CompleteK00656COG1882Firmicutesunknown70.1874.8430.32
hpdB380205Lack 5'-endK00656COG1882unknownunknown73.7388.3230.67
hpdB270542CompleteK00656COG1882unknownunknown79.2784.1630.26
hpdB510876Lack 5'-endK00656COG1882unknownunknown70.2996.3630.83
hpdB235753CompleteK00656COG1882unknownunknown74.6176.9430.89
hpdB268953Lack 5'-endK00656COG1882BacteroidetesOdoribacter72.8477.8830.93
hpdB211400CompleteK00656COG1882unknownunknown73.0671.7830.11
hpdB234551CompleteK00656COG1882unknownunknown74.6176.7630.66
hpdB221104CompleteK00656COG1882Firmicutesunknown70.0770.0730.52
hpdB292147Lack 5'-endK00656COG1882Firmicutesunknown70.0775.4530.17
hpdB276354CompleteK00656COG1882FirmicutesCoprobacillus70.0775.5130.0
hpdB271136CompleteK00656COG1882unknownunknown70.0774.7830.39
hpdB265983CompleteK00656COG1882unknownunknown70.0774.4330.03
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classDeltaproteobacteria0.4065.71e-758.98e-73
orderDesulfovibrionales0.4065.71e-758.98e-73
familyDesulfovibrionaceae0.4065.71e-758.98e-73
genusBilophila0.3971.5e-711.77e-69
speciesBilophila_unclassified0.3941.88e-701.77e-68
speciesClostridium_citroniae0.371.35e-611.06e-59
speciesClostridium_bolteae0.3611.63e-581.1e-56
speciesBilophila_wadsworthia0.3513e-551.77e-53
genusFlavonifractor0.3231.23e-465.81e-45
speciesFlavonifractor_plautii0.3231.23e-465.81e-45
speciesClostridium_asparagiforme0.321.18e-455.06e-44
speciesAnaerotruncus_colihominis0.3027.82e-413.08e-39
speciesClostridium_symbiosum0.2972.12e-397.7e-38
speciesClostridium_hathewayi0.2957.07e-392.38e-37
speciesOdoribacter_splanchnicus0.2941.28e-384.03e-37
genusOdoribacter0.2852.93e-368.64e-35
speciesClostridiales_bacterium_1_7_47FAA0.2844.45e-361.24e-34
familyBacteroidaceae0.2763.68e-349.14e-33
genusBacteroides0.2763.68e-349.14e-33
genusParabacteroides0.2463.11e-277.17e-26
familyClostridiales_noname0.2463.19e-277.17e-26
genusHoldemania0.2463.66e-277.85e-26
familyPorphyromonadaceae0.2456.4e-271.31e-25
genusEggerthella0.238.98e-241.72e-22
speciesEggerthella_unclassified0.2299.11e-241.72e-22
familyOscillospiraceae0.2222.63e-224.6e-21
genusOscillibacter0.2222.63e-224.6e-21
speciesBacteroides_nordii0.2198.46e-221.43e-20
familyRikenellaceae0.2148.51e-211.34e-19
genusAlistipes0.2148.51e-211.34e-19
speciesBacteroides_xylanisolvens0.2131.28e-201.95e-19
speciesBacteroides_thetaiotaomicron0.2113.15e-204.65e-19
familyClostridiaceae0.2062.39e-193.42e-18
speciesOscillibacter_unclassified0.2062.52e-193.5e-18
genusClostridium0.2053.97e-195.35e-18
speciesBacteroides_oleiciplenus0.22.81e-183.68e-17
speciesParabacteroides_goldsteinii0.1951.96e-172.5e-16
speciesBifidobacterium_adolescentis-0.1933.58e-174.45e-16
classBacteroidia0.191.13e-161.32e-15
orderBacteroidales0.191.13e-161.32e-15
phylumBacteroidetes0.191.15e-161.32e-15
speciesBacteroides_stercoris0.191.21e-161.36e-15
genusClostridiales_noname0.1891.72e-161.89e-15
speciesBacteroides_intestinalis0.1891.86e-162e-15
speciesBacteroides_ovatus0.1858.1e-168.5e-15
speciesBacteroides_salyersiae0.1813.3e-153.39e-14
genusCoprobacillus0.1796.43e-156.46e-14
speciesLachnospiraceae_bacterium_1_1_57FAA0.1771.18e-141.16e-13
speciesBacteroides_caccae0.1771.32e-141.27e-13
genusClostridiaceae_noname0.1752.42e-142.24e-13
speciesClostridiaceae_bacterium_JC1180.1752.42e-142.24e-13
speciesHoldemania_filiformis0.1743.12e-142.83e-13
speciesBacteroides_uniformis0.1727.8e-146.95e-13
speciesClostridium_clostridioforme0.171.29e-131.13e-12
speciesAlistipes_putredinis0.171.51e-131.3e-12
speciesRuminococcus_gnavus0.1682.36e-131.99e-12
speciesCoprobacillus_unclassified0.1682.54e-132.1e-12
phylumFirmicutes-0.1683.06e-132.49e-12
speciesLachnospiraceae_bacterium_1_4_56FAA0.1664.86e-133.89e-12
genusLachnospiraceae_noname0.1665.11e-134.02e-12
genusDialister-0.1612.31e-121.79e-11
speciesBacteroides_fragilis0.1612.64e-122.01e-11
speciesBacteroides_cellulosilyticus0.1577.82e-125.86e-11
genusButyricimonas0.1551.5e-111.08e-10
speciesButyricimonas_synergistica0.1551.5e-111.08e-10
speciesAlistipes_onderdonkii0.1551.51e-111.08e-10
speciesEscherichia_coli0.1551.83e-111.29e-10
genusPhascolarctobacterium-0.1541.93e-111.32e-10
speciesPhascolarctobacterium_succinatutens-0.1541.93e-111.32e-10
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1532.83e-111.89e-10
speciesClostridium_ramosum0.1532.84e-111.89e-10
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1515.56e-113.64e-10
classNegativicutes-0.158.1e-115.17e-10
orderSelenomonadales-0.158.1e-115.17e-10
speciesAlistipes_shahii0.1498.31e-115.23e-10
genusEscherichia0.1491.04e-106.46e-10
speciesSubdoligranulum_sp_4_3_54A2FAA0.1491.07e-106.54e-10
speciesMethanobrevibacter_smithii-0.1491.08e-106.54e-10
speciesParabacteroides_distasonis0.1461.99e-101.19e-09
speciesBacteroides_pectinophilus-0.1462.01e-101.19e-09
speciesBacteroides_clarus0.1444.03e-102.35e-09
speciesAlistipes_indistinctus0.1426.22e-103.58e-09
classMethanobacteria-0.1419.01e-105e-09
orderMethanobacteriales-0.1419.01e-105e-09
familyMethanobacteriaceae-0.1419.01e-105e-09
speciesEggerthella_lenta0.1419.72e-105.33e-09
speciesParabacteroides_johnsonii0.141.15e-096.24e-09
genusMethanobrevibacter-0.141.27e-096.81e-09
phylumProteobacteria0.1391.75e-099.28e-09
phylumEuryarchaeota-0.1382.28e-091.2e-08
genusDesulfovibrio0.1354.19e-092.17e-08
speciesLachnospiraceae_bacterium_5_1_57FAA0.1354.48e-092.3e-08
speciesEubacterium_rectale-0.1354.63e-092.35e-08
speciesRuminococcus_torques0.1321.03e-085.17e-08
speciesOlsenella_unclassified-0.1311.37e-086.81e-08
speciesBacteroides_massiliensis0.1311.41e-086.93e-08
speciesMitsuokella_unclassified-0.131.68e-088.17e-08
genusOlsenella-0.131.79e-088.62e-08
genusButyrivibrio-0.1292.26e-081.08e-07
genusMegamonas0.1282.51e-081.18e-07
speciesMegamonas_unclassified0.1282.82e-081.32e-07
speciesMegamonas_rupellensis0.1273.5e-081.62e-07
speciesEubacterium_sp_3_1_310.1273.75e-081.72e-07
orderEnterobacteriales0.1273.88e-081.74e-07
familyEnterobacteriaceae0.1273.88e-081.74e-07
speciesLactobacillus_ruminis-0.1273.9e-081.74e-07
speciesDorea_longicatena-0.1255.47e-082.41e-07
speciesAlistipes_finegoldii0.1231.06e-074.63e-07
genusMitsuokella-0.1211.42e-076.15e-07
speciesClostridium_sp_ATCC_BAA_4420.1211.59e-076.82e-07
speciesButyrivibrio_crossotus-0.1211.62e-076.89e-07
speciesDialister_invisus-0.121.8e-077.59e-07
speciesBacteroides_finegoldii0.121.83e-077.64e-07
genusCoprococcus-0.121.94e-078.03e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.122.13e-078.74e-07
speciesStreptococcus_parasanguinis-0.1192.2e-078.95e-07
familyLactobacillaceae-0.1192.34e-079.44e-07
speciesClostridium_nexile0.1183.35e-071.34e-06
genusHaemophilus-0.1164.88e-071.94e-06
speciesPeptostreptococcaceae_noname_unclassified-0.1155.58e-072.18e-06
familyFusobacteriaceae0.1155.6e-072.18e-06
speciesCampylobacter_concisus-0.1156.08e-072.35e-06
classClostridia-0.1156.19e-072.36e-06
orderClostridiales-0.1156.19e-072.36e-06
speciesHaemophilus_parainfluenzae-0.1156.34e-072.39e-06
orderPasteurellales-0.1146.93e-072.58e-06
familyPasteurellaceae-0.1146.93e-072.58e-06
genusLactobacillus-0.1148.2e-073.02e-06
genusBifidobacterium-0.1148.6e-073.15e-06
speciesMegamonas_hypermegale0.1138.67e-073.15e-06
genusActinobacillus-0.1131.06e-063.79e-06
speciesActinobacillus_unclassified-0.1131.06e-063.79e-06
familyRuminococcaceae-0.1131.07e-063.8e-06
orderBifidobacteriales-0.1121.15e-064e-06
familyBifidobacteriaceae-0.1121.15e-064e-06
phylumFusobacteria0.1121.17e-064e-06
classFusobacteriia0.1121.17e-064e-06
orderFusobacteriales0.1121.17e-064e-06
speciesCollinsella_aerofaciens-0.1121.23e-064.18e-06
speciesBifidobacterium_longum-0.1121.32e-064.45e-06
genusBlautia0.1111.55e-065.19e-06
genusFusobacterium0.1111.63e-065.41e-06
speciesBacteroides_faecis0.1111.64e-065.41e-06
speciesCoprococcus_catus-0.111.94e-066.36e-06
speciesBlautia_producta0.112.05e-066.67e-06
genusTuricibacter-0.1092.14e-066.92e-06
speciesOscillibacter_sp_KLE_17450.1092.24e-067.19e-06
speciesCoprococcus_sp_ART55_1-0.1092.54e-068.1e-06
genusCatenibacterium-0.1082.9e-069.13e-06
speciesCatenibacterium_mitsuokai-0.1082.9e-069.13e-06
speciesParabacteroides_merdae0.1073.5e-061.09e-05
speciesSutterella_wadsworthensis-0.1073.58e-061.11e-05
speciesTuricibacter_unclassified-0.1055.78e-061.78e-05
genusPeptostreptococcaceae_noname-0.1046.84e-062.1e-05
speciesBacteroides_vulgatus0.1037.73e-062.35e-05
speciesBacteroides_sp_3_1_190.1038.32e-062.52e-05
classBacilli-0.1021.01e-053.04e-05
orderLactobacillales-0.1011.13e-053.38e-05
speciesCollinsella_tanakaei0.1011.15e-053.41e-05
speciesEubacterium_dolichum0.1011.22e-053.6e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.1011.31e-053.84e-05
genusGordonibacter0.11.48e-054.29e-05
speciesGordonibacter_pamelaeae0.11.48e-054.29e-05
speciesEubacterium_siraeum-0.11.51e-054.35e-05
speciesFusobacterium_varium0.0991.73e-054.95e-05
familyAcidaminococcaceae-0.0982.09e-055.94e-05
familyBurkholderiales_noname0.0982.34e-056.61e-05
genusPyramidobacter0.0972.57e-057.18e-05
speciesPyramidobacter_piscolens0.0972.57e-057.18e-05
speciesLachnospiraceae_bacterium_7_1_58FAA0.0972.65e-057.36e-05
genusDorea-0.0963.15e-058.69e-05
speciesTuricibacter_sanguinis-0.0963.17e-058.7e-05
genusBurkholderiales_noname0.0963.44e-059.33e-05
speciesBurkholderiales_bacterium_1_1_470.0963.44e-059.33e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.0953.54e-059.55e-05
orderActinomycetales-0.0954.19e-050.000112
speciesDialister_succinatiphilus-0.0944.9e-050.000131
speciesAnaerostipes_unclassified0.0945.05e-050.000134
speciesBifidobacterium_pseudocatenulatum0.0935.17e-050.000136
familyPeptostreptococcaceae-0.0936.03e-050.000158
speciesBacteroides_eggerthii0.0926.89e-050.00018
genusSutterella-0.0917.96e-050.000206
speciesLactobacillus_mucosae-0.0918.51e-050.000219
genusMethanosphaera-0.099.5e-050.000242
speciesMethanosphaera_stadtmanae-0.099.5e-050.000242
speciesLachnospiraceae_bacterium_6_1_63FAA0.099.82e-050.000249
genusParasutterella0.090.0001030.000259
speciesParasutterella_excrementihominis0.090.0001030.000259
phylumSynergistetes0.0890.0001060.000261
classSynergistia0.0890.0001060.000261
orderSynergistales0.0890.0001060.000261
familySynergistaceae0.0890.0001060.000261
genusEubacterium-0.0890.000110.000269
familyEubacteriaceae-0.0890.0001160.000282
familyVeillonellaceae-0.0890.0001220.000295
speciesBlautia_hydrogenotrophica0.0890.0001250.000301
speciesHoldemania_sp_AP20.0880.0001280.000307
speciesDesulfovibrio_desulfuricans0.0880.0001460.000348
genusAnaerotruncus0.0880.0001470.000349
speciesRuminococcus_champanellensis-0.0870.000160.000378
genusRothia-0.0870.0001720.000404
familyMicrococcaceae-0.0860.0001860.000435
speciesRoseburia_intestinalis-0.0850.0002270.000528
genusCollinsella-0.0850.0002530.000585
speciesKlebsiella_pneumoniae0.0830.0003090.000711
speciesBifidobacterium_catenulatum-0.0830.0003430.000786
speciesBifidobacterium_dentium-0.0820.0003790.000864
familyOxalobacteraceae0.0820.0003850.000874
orderCaudovirales-0.0820.0003880.000876
speciesCollinsella_intestinalis0.0820.0004090.000919
genusOxalobacter0.0810.0004320.000962
speciesOxalobacter_formigenes0.0810.0004320.000962
speciesBifidobacterium_angulatum-0.0810.000480.00106
speciesStreptococcus_mutans-0.080.000560.00124
speciesEubacterium_limosum0.0790.0005950.00131
speciesLactobacillus_sanfranciscensis0.0790.0006470.00141
genusKlebsiella0.0790.0006760.00147
orderBurkholderiales0.0780.0006860.00148
phylumActinobacteria-0.0780.0006950.00148
classActinobacteria-0.0780.0006950.00148
speciesStreptococcus_gordonii-0.0780.0006950.00148
genusFaecalibacterium-0.0780.0007350.00156
speciesFaecalibacterium_prausnitzii-0.0780.0007350.00156
speciesHoldemania_unclassified0.0780.0007850.00165
speciesStreptococcus_vestibularis-0.0760.0009650.00202
speciesStreptococcus_mitis_oralis_pneumoniae-0.0760.001010.00211
speciesStreptococcus_thermophilus-0.0760.001030.00214
speciesMethanobrevibacter_unclassified-0.0750.001140.00236
speciesCoprococcus_comes-0.0740.001280.00264
genusCoriobacteriaceae_noname0.0740.001390.00285
familySiphoviridae-0.0740.00140.00286
speciesVeillonella_unclassified-0.0740.001430.00291
speciesCoriobacteriaceae_bacterium_phI0.0730.001560.00316
speciesEscherichia_unclassified0.0730.001650.00333
classErysipelotrichia0.0730.001690.00335
orderErysipelotrichales0.0730.001690.00335
familyErysipelotrichaceae0.0730.001690.00335
speciesMitsuokella_multacida-0.0730.001690.00335
speciesRothia_mucilaginosa-0.0730.00170.00336
classBetaproteobacteria0.0720.001830.0036
speciesFusobacterium_mortiferum0.0720.001840.0036
phylumViruses_noname-0.0720.001930.00375
classViruses_noname-0.0720.001930.00375
genusCoprobacter0.0720.001960.00378
speciesCoprobacter_fastidiosus0.0720.001960.00378
speciesFusobacterium_ulcerans0.0710.002030.00389
speciesErysipelotrichaceae_bacterium_3_1_530.0710.002050.00392
genusC2likevirus-0.0710.00210.004
speciesCoprococcus_eutactus-0.0710.002230.00423
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.070.002390.00451
speciesLactobacillus_fermentum-0.070.002450.00461
genusActinomyces-0.070.002480.00465
familyActinomycetaceae-0.070.002560.00478
classGammaproteobacteria0.0690.002680.00498
speciesLactobacillus_gasseri-0.0690.002710.00502
speciesOdoribacter_unclassified-0.0690.002740.00505
speciesC2likevirus_unclassified-0.0690.002760.00507
speciesClostridium_sp_L2_50-0.0690.002920.00534
speciesBacteroides_dorei0.0680.003240.0059
speciesPrevotella_buccae-0.0680.003320.00603
speciesMegamonas_funiformis0.0670.003660.00662
speciesAlistipes_sp_AP110.0670.003850.00694
speciesAlistipes_sp_HGB5-0.0670.003960.00711
genusVeillonella-0.0670.0040.00715
speciesEubacterium_biforme-0.0640.005510.00978
speciesParabacteroides_unclassified0.0640.005510.00978
speciesEnterobacteria_phage_HK5440.0640.005560.00983
genusAdlercreutzia0.0640.00560.00983
speciesAdlercreutzia_equolifaciens0.0640.00560.00983
speciesVeillonella_atypica-0.0640.005940.0104
speciesErysipelotrichaceae_bacterium_2_2_44A0.0630.006370.0111
genusAggregatibacter-0.0630.006470.0112
genusPropionibacterium-0.0620.006980.0121
speciesDesulfovibrio_piger0.0620.00760.0131
speciesLactobacillus_rhamnosus-0.0620.007630.0131
genusSiphoviridae_noname-0.0610.007970.0136
familyStaphylococcaceae0.0610.008520.0145
speciesFusobacterium_nucleatum-0.060.008920.0151
speciesBacteroides_salanitronis-0.0590.01040.0176
speciesVeillonella_parvula-0.0590.0110.0185
familyStreptococcaceae-0.0580.01240.0208
speciesKlebsiella_unclassified0.0580.01260.0211
speciesLactobacillus_delbrueckii-0.0580.01280.0213
speciesAlistipes_unclassified-0.0570.01310.0218
speciesHaemophilus_sputorum-0.0570.01330.022
genusStreptococcus-0.0570.01420.0234
speciesPropionibacterium_freudenreichii-0.0560.01460.024
familyPropionibacteriaceae-0.0560.0160.0262
speciesLactococcus_phage_P680-0.0550.01740.0284
speciesStreptococcus_sanguinis-0.0550.0180.0293
familySutterellaceae0.0540.01870.0303
speciesSutterella_parvirubra0.0540.01920.031
speciesAnaerotruncus_unclassified-0.0540.01930.0311
speciesAnaerostipes_hadrus-0.0530.02280.0366
speciesAggregatibacter_segnis-0.0520.02380.0381
speciesMegasphaera_micronuciformis-0.0510.0260.0415
speciesAcidaminococcus_intestini0.0510.02760.0439
speciesBifidobacterium_bifidum-0.0510.02790.0442
speciesSubdoligranulum_unclassified-0.050.02920.0461
genusStaphylococcus0.050.02940.0463
speciesStreptococcus_salivarius-0.050.0310.0486
genusPeptoniphilus0.0490.03470.0542
speciesDorea_formicigenerans-0.0490.03540.0551
speciesVeillonella_dispar-0.0480.03710.0576
speciesBacteroides_sp_2_1_220.0480.03830.0593
speciesClostridium_perfringens-0.0480.03940.0608
speciesLactococcus_phage_phi7-0.0470.04170.0641
speciesBacteroides_plebeius0.0470.04180.0641
speciesClostridium_bartlettii-0.0460.04480.0684
speciesAlistipes_senegalensis0.0460.04550.0693
speciesHaemophilus_paraphrohaemolyticus-0.0460.04670.0709
speciesPeptostreptococcus_anaerobius0.0450.04980.0753
familyClostridiales_Family_XI_Incertae_Sedis0.0440.05440.082
speciesCollinsella_unclassified0.0440.05510.0828
speciesCoprobacillus_sp_29_10.0440.05880.0881
speciesErysipelotrichaceae_bacterium_6_1_450.0440.05910.0883
genusEnterobacter0.0430.06470.0963
speciesClostridium_sp_KLE_17550.0420.06720.0997
speciesParabacteroides_sp_D13-0.0420.06880.102
speciesBacteroides_fluxus0.0420.07020.104
genusProteus-0.0420.0710.104
genusTunalikevirus0.0420.0710.104
familyViruses_noname0.0410.07560.11
genusViruses_noname0.0410.07560.11
speciesEnterobacter_cloacae0.0410.07880.114
speciesEubacterium_ramulus-0.040.08130.117
genusSubdoligranulum-0.040.08140.117
speciesLactobacillus_vaginalis-0.040.08440.121
speciesSlackia_piriformis0.040.08680.125
genusLeuconostoc-0.0390.08860.127
speciesButyrivibrio_unclassified-0.0390.09010.128
genusCitrobacter0.0390.09280.132
speciesLactobacillus_casei_paracasei-0.0390.09510.135
speciesBacteroides_coprocola0.0380.0980.138
speciesClostridium_leptum0.0380.10.141
genusPseudoflavonifractor-0.0380.1010.141
speciesPseudoflavonifractor_capillosus-0.0380.1010.141
familyLachnospiraceae-0.0380.1030.144
classEpsilonproteobacteria-0.0360.1170.162
orderCampylobacterales-0.0360.1170.162
genusSlackia0.0360.120.166
speciesLachnospiraceae_bacterium_5_1_63FAA0.0360.120.166
speciesPrevotella_bivia0.0360.1240.171
speciesCoprobacillus_sp_D60.0350.130.178
familyBacteroidales_noname0.0340.1380.188
genusBacteroidales_noname0.0340.1380.188
speciesBacteroidales_bacterium_ph80.0340.1380.188
speciesRoseburia_unclassified-0.0340.1420.193
speciesCitrobacter_freundii0.0340.1450.196
speciesLactococcus_phage_jm2-0.0340.1480.2
speciesLactococcus_lactis-0.0330.150.202
speciesKlebsiella_phage_KP360.0330.1550.208
familyCampylobacteraceae-0.0320.1640.219
speciesStreptococcus_australis0.0320.1660.221
orderAeromonadales-0.0310.1820.242
speciesEubacterium_eligens-0.0310.1870.248
speciesCitrobacter_unclassified0.030.1950.258
genusLambdalikevirus0.030.20.264
genusCampylobacter-0.0290.2140.281
familyPodoviridae-0.0280.2210.29
speciesKlebsiella_sp_MS_92_30.0280.2260.295
speciesPeptostreptococcus_stomatis-0.0280.2290.299
speciesLactobacillus_crispatus-0.0270.2390.31
speciesStreptococcus_anginosus-0.0270.2390.31
genusErysipelotrichaceae_noname0.0270.2410.311
speciesBacteroides_barnesiae-0.0270.2410.311
speciesBifidobacterium_breve-0.0270.2460.316
speciesPorphyromonas_asaccharolytica0.0270.2480.318
familyPrevotellaceae-0.0260.2560.327
speciesRuminococcus_sp_5_1_39BFAA-0.0260.2580.329
speciesEnterococcus_faecium-0.0260.2630.335
speciesParabacteroides_sp_20_3-0.0250.2710.344
speciesEubacterium_cylindroides-0.0250.2770.35
speciesLachnospiraceae_bacterium_3_1_46FAA0.0250.2770.35
speciesPrevotella_stercorea-0.0250.2810.354
genusMegasphaera-0.0250.2880.361
speciesClostridium_spiroforme0.0250.2880.361
speciesDorea_unclassified0.0240.3040.38
speciesEnterobacter_aerogenes0.0230.3190.397
orderPseudomonadales-0.0230.3210.399
genusWeissella0.0230.3220.399
speciesRuminococcus_lactaris-0.0230.3280.405
genusParvimonas0.0220.3310.407
speciesParvimonas_unclassified0.0230.3310.407
speciesWeissella_cibaria0.0220.3410.418
genusButyricicoccus0.0220.3430.418
speciesButyricicoccus_pullicaecorum0.0220.3430.418
genusLactococcus-0.0210.3550.432
familySuccinivibrionaceae-0.0210.3670.445
genusParaprevotella-0.020.3840.465
speciesParaprevotella_unclassified-0.020.3910.472
speciesStreptococcus_pasteurianus0.020.3950.476
speciesProteus_mirabilis-0.0190.40.48
speciesBifidobacterium_animalis-0.0190.4050.485
speciesLactobacillus_reuteri0.0190.4080.488
speciesOscillibacter_sp_KLE_1728-0.0190.420.5
speciesStreptococcus_lutetiensis-0.0190.4210.5
speciesRuminococcus_callidus0.0190.4220.5
speciesLactococcus_garvieae0.0180.4260.504
speciesParaprevotella_xylaniphila-0.0180.430.507
genusAcidaminococcus0.0180.4490.528
genusEnterococcus-0.0170.4540.532
speciesStreptococcus_phage_Sfi210.0170.4540.532
speciesLactobacillus_salivarius-0.0170.4650.543
speciesAcidaminococcus_unclassified-0.0170.4660.543
familyEnterococcaceae-0.0170.4730.549
speciesPorphyromonas_uenonis0.0170.4750.549
genusSuccinatimonas-0.0160.4760.549
speciesSuccinatimonas_hippei-0.0160.4760.549
speciesGemella_morbillorum0.0160.4870.561
genusSutterellaceae_unclassified0.0160.4960.57
speciesLactobacillus_acidophilus-0.0160.5010.574
genusBarnesiella0.0150.5060.577
speciesBarnesiella_intestinihominis0.0150.5060.577
speciesRuminococcus_bromii-0.0150.5080.578
genusSolobacterium0.0150.5150.583
speciesSolobacterium_moorei0.0150.5150.583
genusPorphyromonas0.0150.520.587
speciesEubacterium_ventriosum0.0140.5410.609
genusRoseburia0.0140.5430.61
speciesLactobacillus_oris-0.0130.5620.63
familyLeuconostocaceae-0.0130.5840.653
speciesLactobacillus_amylovorus-0.0130.5860.653
speciesPrevotella_copri-0.0130.5870.653
genusAcidaminococcaceae_unclassified0.0120.6020.669
genusAnaerostipes-0.0120.6050.67
speciesEubacterium_hallii-0.0120.6130.678
genusPrevotella-0.0110.6250.689
speciesLactococcus_phage_bIL67-0.0110.6480.712
speciesRuminococcus_sp_JC304-0.0110.6490.712
speciesBacteroides_sp_4_3_47FAA0.010.6660.729
speciesWeissella_confusa0.010.670.732
speciesMegasphaera_unclassified0.010.6750.736
speciesRoseburia_hominis0.010.6810.741
speciesBacteroides_coprophilus-0.0090.7060.766
orderBacillales0.0080.7270.775
phylumVerrucomicrobia-0.0080.7280.775
classVerrucomicrobiae-0.0080.7280.775
orderVerrucomicrobiales-0.0080.7280.775
familyVerrucomicrobiaceae-0.0080.7280.775
genusAkkermansia-0.0080.7280.775
speciesAkkermansia_muciniphila-0.0080.7280.775
orderCoriobacteriales0.0080.7290.775
familyCoriobacteriaceae0.0080.7290.775
speciesKlebsiella_oxytoca0.0080.7350.78
speciesLeuconostoc_lactis-0.0080.7370.78
speciesMegasphaera_elsdenii-0.0070.7770.82
speciesRoseburia_inulinivorans0.0070.7780.82
orderViruses_noname0.0060.7910.829
familyBacillales_noname-0.0060.7920.829
genusGemella-0.0060.7920.829
speciesParaprevotella_clara-0.0060.8040.84
speciesRuminococcus_obeum-0.0060.8080.842
speciesLactobacillus_plantarum0.0050.8330.863
genusRuminococcaceae_noname-0.0050.8340.863
speciesRuminococcaceae_bacterium_D16-0.0050.8340.863
speciesStreptococcus_infantarius0.0050.8360.863
genusRuminococcus-0.0040.8510.876
speciesOdoribacter_laneus-0.0040.8520.876
speciesLactococcus_phage_936_sensu_lato-0.0040.8580.88
genusMorganella-0.0040.8650.884
speciesMorganella_morganii-0.0040.8650.884
speciesBacteroides_sp_1_1_60.0040.8680.885
speciesErysipelotrichaceae_bacterium_21_30.0040.8710.886
genusPantoea0.0020.9220.932
speciesPantoea_unclassified0.0020.9220.932
speciesEggerthella_sp_1_3_56FAA-0.0020.9220.932
genusPeptostreptococcus0.0020.9410.949
speciesAcidaminococcus_fermentans0.0020.9480.954
genusMyoviridae_noname0.0010.9510.955
speciesEnterococcus_faecalis-0.0010.9780.98
familyMyoviridae0.00.9890.989
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01303179756610.01752268337282.15513327478e-05400813.4637
Type II diabetesDenmark752770.01260113637270.01033624721670.00323599615981321510.5386
Type II diabetesChina1831850.02494022020180.01883200387760.0066734632532321310.6183
Ulcerative colitisSpain78660.01125232915720.0145602380260.021719431304529669.78426
Colorectal cancerAustria64350.01104131487520.0214879351080.2674877956081116437.7724
Rheumatoid arthritisChina127980.01614787495160.01614085893570.3002770548251218140.6209
Type II diabetesSweden53920.009340516636820.009783779898810.3939163777481282343.4236
Crohns diseaseSpain17660.01207924195010.0145602380260.4069020195312175672.3391
ObesityDenmark1691230.01092608842770.009398125754950.8361645223942712189.1815
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382