MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-13 21:03:20 PST
Job id & description: 1647, cutc1
Query type: protein
Count queries & homologs: 54, 22
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
CutC%fig|1141661.3.peg.2268|OO9_11341|VBIProAlc23957078100CompleteK00656COG1882ProteobacteriaProvidencia100.0100.093.26
CutC%fig|1141661.3.peg.2268|OO9_11341|VBIProAlc23957078340CompleteK00656COG1882ProteobacteriaProteus100.0100.085.83
CutC%fig|1002368.3.peg.4239|HMPREF0880_04646|VBIYokReg18934081961CompleteK00656COG1882ProteobacteriaKlebsiella100.0100.087.8
CutC%fig|1002368.3.peg.4239|HMPREF0880_04646|VBIYokReg18934082127CompleteK00656COG1882ProteobacteriaKlebsiella100.0100.087.43
CutC%fig|1002368.3.peg.4239|HMPREF0880_04646|VBIYokReg18934078976CompleteK00656COG1882ProteobacteriaEscherichia100.098.9586.11
CutC%fig|1002368.3.peg.4239|HMPREF0880_04646|VBIYokReg18934081950CompleteK00656COG1882ProteobacteriaKlebsiella100.0100.086.64
CutC%fig|1232460.3.peg.6068|VBICloBac303911_6068|202755CompleteK00656COG1882Firmicutesunknown98.18100.098.73
CutC%fig|1280695.3.peg.868|VBICloClo271786_0868|212087CompleteK00656COG1882Firmicutesunknown100.0100.099.88
CutC%fig|1262851.3.peg.1056|BN589_00981|219417CompleteK00656COG1882Actinobacteriaunknown100.0100.099.88
CutC%fig|1280689.3.peg.1984|VBICloPar272395_1984|217899CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
CutC%fig|1232440.3.peg.3985|VBICloBac312542_3985|217569CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
CutC%fig|1118055.3.peg.1296|VBIAnaSp223856_1296|215393CompleteK00656COG1882FirmicutesAnaerococcus100.0100.098.47
CutC%fig|1232440.3.peg.3985|VBICloBac312542_3985|217789CompleteK00656COG1882Firmicutesunknown100.0100.097.16
CutC%fig|1232460.3.peg.6068|VBICloBac303911_6068|205091CompleteK00656COG1882Firmicutesunknown100.0100.092.96
CutC%fig|1280695.3.peg.868|VBICloClo271786_0868|213698CompleteK00656COG1882Firmicutesunknown100.0100.093.55
CutC%fig|1280695.3.peg.868|VBICloClo271786_0868|197389Lack 5'-endK00656COG1882Firmicutesunknown100.097.5993.32
CutC%fig|1415775.6.peg.817|218717CompleteK00656COG1882Firmicutesunknown100.0100.087.15
CutC%fig|1339239.3.peg.1524|221104CompleteK00656COG1882Firmicutesunknown100.0100.084.1
CutC%fig|1121436.3.peg.267|VBIDesAla276798_0267|213303CompleteK00656COG1882Proteobacteriaunknown99.6599.6583.84
CutC%fig|1302613.3.peg.615|VBIDesSp282352_0615|249756CompleteK00656COG1882unknownunknown98.5399.1485.55
CutC%fig|1302613.3.peg.615|VBIDesSp282352_0615|249406CompleteK00656COG1882Proteobacteriaunknown98.5399.1485.18
CutC%fig|1476999.3.peg.1082|HMPREF1868_01112|364647Lack 3'-endK00656COG1882ActinobacteriaOlsenella84.32100.091.75
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesClostridium_bolteae0.4581.99e-979.39e-95
orderEnterobacteriales0.4241.51e-822.38e-80
familyEnterobacteriaceae0.4241.51e-822.38e-80
speciesClostridium_hathewayi0.4242.08e-822.45e-80
speciesClostridiales_bacterium_1_7_47FAA0.4087.98e-767.53e-74
familyClostridiaceae0.3978.46e-726.66e-70
genusClostridium0.3963.56e-712.4e-69
genusEscherichia0.3855.35e-673.16e-65
speciesEscherichia_coli0.3826.3e-663.3e-64
classGammaproteobacteria0.3827.15e-663.37e-64
speciesRuminococcus_gnavus0.381.76e-657.55e-64
speciesClostridium_symbiosum0.3679.32e-613.67e-59
speciesClostridium_citroniae0.3581.26e-574.57e-56
genusCoprobacillus0.3573.72e-571.25e-55
speciesClostridium_clostridioforme0.3347.09e-502.23e-48
speciesCoprobacillus_unclassified0.3339e-502.65e-48
phylumProteobacteria0.3322.95e-498.19e-48
genusClostridiales_noname0.331.08e-482.83e-47
genusKlebsiella0.3222.24e-465.56e-45
speciesClostridium_ramosum0.3215.57e-461.31e-44
genusFlavonifractor0.3183.47e-457.44e-44
speciesFlavonifractor_plautii0.3183.47e-457.44e-44
speciesKlebsiella_pneumoniae0.3082.28e-424.68e-41
familyClostridiales_noname0.3073.85e-427.57e-41
phylumFusobacteria0.2941.64e-382.87e-37
classFusobacteriia0.2941.64e-382.87e-37
orderFusobacteriales0.2941.64e-382.87e-37
familyFusobacteriaceae0.2933.12e-385.26e-37
genusFusobacterium0.2852.98e-364.85e-35
speciesClostridium_asparagiforme0.2813.01e-354.74e-34
speciesClostridium_nexile0.2796.67e-351.02e-33
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2765.73e-348.45e-33
speciesLachnospiraceae_bacterium_6_1_63FAA0.2675.82e-328.32e-31
genusEggerthella0.2612.2e-303.05e-29
speciesEggerthella_unclassified0.2571.28e-291.73e-28
genusEnterobacter0.2554.58e-296e-28
speciesEnterobacter_cloacae0.2463.87e-274.94e-26
speciesEubacterium_rectale-0.2431.95e-262.42e-25
speciesAnaerostipes_unclassified0.2422.69e-263.26e-25
speciesLachnospiraceae_bacterium_1_4_56FAA0.2381.94e-252.29e-24
speciesFusobacterium_ulcerans0.2314.08e-244.7e-23
speciesKlebsiella_oxytoca0.2315.06e-245.69e-23
speciesEscherichia_unclassified0.2257.4e-238.12e-22
speciesEubacterium_siraeum-0.2222.39e-222.56e-21
genusPantoea0.2214.09e-224.2e-21
speciesPantoea_unclassified0.2214.09e-224.2e-21
speciesLachnospiraceae_bacterium_5_1_57FAA0.2181.37e-211.38e-20
speciesBlautia_producta0.2162.98e-212.93e-20
genusBlautia0.2062.13e-192.05e-18
familyEubacteriaceae-0.2053.01e-192.84e-18
genusEubacterium-0.2053.15e-192.92e-18
familyBacteroidales_noname-0.2038.99e-197.86e-18
genusBacteroidales_noname-0.2038.99e-197.86e-18
speciesBacteroidales_bacterium_ph8-0.2038.99e-197.86e-18
familyRuminococcaceae-0.2011.69e-181.45e-17
genusFaecalibacterium-0.22.34e-181.94e-17
speciesFaecalibacterium_prausnitzii-0.22.34e-181.94e-17
genusMegasphaera0.22.83e-182.3e-17
genusCoprococcus-0.1984.98e-183.98e-17
classErysipelotrichia0.1978.53e-186.49e-17
orderErysipelotrichales0.1978.53e-186.49e-17
familyErysipelotrichaceae0.1978.53e-186.49e-17
speciesSubdoligranulum_unclassified-0.1961.16e-178.69e-17
speciesLachnospiraceae_bacterium_2_1_58FAA0.1891.45e-161.07e-15
speciesCitrobacter_freundii0.1882.78e-162.02e-15
genusSubdoligranulum-0.1864.71e-163.37e-15
speciesRuminococcus_lactaris-0.1865.04e-163.55e-15
speciesEubacterium_eligens-0.1831.32e-159.16e-15
genusCitrobacter0.1822.05e-151.4e-14
speciesRoseburia_hominis-0.1796.83e-154.61e-14
speciesCoprococcus_catus-0.1789.1e-156.05e-14
speciesEubacterium_ramulus-0.1761.69e-141.11e-13
speciesFusobacterium_varium0.1752.21e-141.43e-13
genusButyrivibrio-0.1752.46e-141.57e-13
speciesAnaerotruncus_colihominis0.1752.77e-141.74e-13
speciesAlistipes_shahii-0.1734.77e-142.96e-13
speciesCitrobacter_unclassified0.171.26e-137.72e-13
speciesErysipelotrichaceae_bacterium_2_2_44A0.171.3e-137.87e-13
speciesMegasphaera_micronuciformis0.1683.08e-131.84e-12
genusBarnesiella-0.1649.47e-135.52e-12
speciesBarnesiella_intestinihominis-0.1649.47e-135.52e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1621.68e-129.67e-12
speciesEggerthella_lenta0.163.39e-121.93e-11
speciesCoprococcus_sp_ART55_1-0.163.89e-122.19e-11
speciesAnaerotruncus_unclassified-0.1594.3e-122.39e-11
speciesFusobacterium_nucleatum0.1594.99e-122.74e-11
speciesKlebsiella_unclassified0.1585.8e-123.15e-11
genusOdoribacter-0.1579.89e-125.3e-11
genusSolobacterium0.1571.01e-115.3e-11
speciesSolobacterium_moorei0.1571.01e-115.3e-11
genusWeissella0.1533.04e-111.58e-10
speciesCoprococcus_comes-0.1514.7e-112.41e-10
speciesEnterobacter_aerogenes0.1515.52e-112.8e-10
orderClostridiales-0.156.5e-113.23e-10
classClostridia-0.156.51e-113.23e-10
speciesEubacterium_dolichum0.1481.13e-105.56e-10
speciesAlistipes_putredinis-0.1481.23e-105.99e-10
genusMorganella0.1471.83e-108.72e-10
speciesMorganella_morganii0.1471.83e-108.72e-10
familyRikenellaceae-0.1471.88e-108.79e-10
genusAlistipes-0.1471.88e-108.79e-10
phylumSynergistetes0.1462.54e-101.14e-09
classSynergistia0.1462.54e-101.14e-09
orderSynergistales0.1462.54e-101.14e-09
familySynergistaceae0.1462.54e-101.14e-09
speciesButyrivibrio_unclassified-0.1452.7e-101.2e-09
speciesLactobacillus_salivarius0.1452.83e-101.25e-09
genusPeptostreptococcus0.1452.87e-101.25e-09
speciesBacteroides_fragilis0.1452.97e-101.29e-09
speciesAlistipes_senegalensis-0.1444.39e-101.88e-09
speciesOdoribacter_splanchnicus-0.1434.69e-101.99e-09
speciesAlistipes_finegoldii-0.1419.43e-103.97e-09
speciesFusobacterium_mortiferum0.141.2e-095.01e-09
speciesPeptostreptococcus_stomatis0.1391.63e-096.75e-09
speciesStreptococcus_anginosus0.1381.89e-097.76e-09
speciesBifidobacterium_adolescentis-0.1372.44e-099.93e-09
familyClostridiales_Family_XI_Incertae_Sedis0.1372.5e-091.01e-08
speciesWeissella_cibaria0.1372.78e-091.11e-08
speciesDorea_longicatena-0.1363.45e-091.37e-08
speciesMegasphaera_unclassified0.1363.5e-091.38e-08
speciesLachnospiraceae_bacterium_2_1_46FAA0.1354.56e-091.78e-08
genusPyramidobacter0.1354.75e-091.82e-08
speciesPyramidobacter_piscolens0.1354.75e-091.82e-08
speciesEubacterium_ventriosum-0.1345.78e-092.2e-08
genusProteus0.1346.3e-092.38e-08
phylumVerrucomicrobia-0.1337.86e-092.83e-08
classVerrucomicrobiae-0.1337.86e-092.83e-08
orderVerrucomicrobiales-0.1337.86e-092.83e-08
familyVerrucomicrobiaceae-0.1337.86e-092.83e-08
genusAkkermansia-0.1337.86e-092.83e-08
speciesAkkermansia_muciniphila-0.1337.86e-092.83e-08
genusClostridiaceae_noname0.131.55e-085.5e-08
speciesClostridiaceae_bacterium_JC1180.131.55e-085.5e-08
speciesLachnospiraceae_bacterium_3_1_46FAA-0.131.58e-085.57e-08
genusEnterococcus0.1283.06e-081.07e-07
familyEnterococcaceae0.1273.54e-081.23e-07
genusCoprobacter-0.1273.69e-081.26e-07
speciesCoprobacter_fastidiosus-0.1273.69e-081.26e-07
speciesWeissella_confusa0.1274.02e-081.36e-07
genusErysipelotrichaceae_noname0.1274.03e-081.36e-07
speciesKlebsiella_sp_MS_92_30.1256.13e-082.05e-07
speciesBifidobacterium_dentium0.1248.28e-082.75e-07
orderLactobacillales0.1238.94e-082.95e-07
speciesAcidaminococcus_intestini0.1239.6e-083.15e-07
speciesEubacterium_limosum0.1239.99e-083.25e-07
genusMegamonas0.1231.02e-073.28e-07
speciesProteus_mirabilis0.1231.03e-073.28e-07
speciesMegamonas_unclassified0.1231.03e-073.28e-07
classBacilli0.1221.24e-073.93e-07
speciesLactococcus_garvieae0.1174.03e-071.27e-06
speciesLactobacillus_oris0.1174.18e-071.31e-06
speciesMitsuokella_unclassified-0.1165.06e-071.57e-06
familyLeuconostocaceae0.1155.56e-071.72e-06
speciesBacteroides_stercoris0.1155.63e-071.73e-06
speciesClostridium_sp_ATCC_BAA_4420.1156.5e-071.98e-06
speciesRoseburia_intestinalis-0.1156.74e-072.04e-06
genusAcidaminococcus0.1156.85e-072.06e-06
familyBacillales_noname0.1148.44e-072.51e-06
genusGemella0.1148.44e-072.51e-06
speciesClostridium_perfringens0.1139.38e-072.77e-06
classDeltaproteobacteria0.1121.1e-063.19e-06
orderDesulfovibrionales0.1121.1e-063.19e-06
familyDesulfovibrionaceae0.1121.1e-063.19e-06
speciesStreptococcus_lutetiensis0.1121.22e-063.51e-06
familyBacteroidaceae0.1111.4e-063.98e-06
genusBacteroides0.1111.4e-063.98e-06
genusMitsuokella-0.1111.46e-064.13e-06
genusAdlercreutzia-0.1111.64e-064.58e-06
speciesAdlercreutzia_equolifaciens-0.1111.64e-064.58e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.111.88e-065.22e-06
genusPseudoflavonifractor-0.111.95e-065.35e-06
speciesPseudoflavonifractor_capillosus-0.111.95e-065.35e-06
familyActinomycetaceae0.1092.09e-065.7e-06
speciesSutterella_wadsworthensis-0.1092.56e-066.94e-06
speciesBilophila_wadsworthia0.1082.82e-067.61e-06
phylumFirmicutes-0.1064.08e-061.09e-05
genusPeptoniphilus0.1054.85e-061.29e-05
speciesAnaerostipes_hadrus-0.1054.9e-061.3e-05
speciesCoprococcus_eutactus-0.1055.07e-061.34e-05
speciesGemella_morbillorum0.1055.46e-061.43e-05
genusCampylobacter0.1046.2e-061.62e-05
speciesBacteroides_pectinophilus-0.1046.44e-061.67e-05
genusRoseburia-0.1046.57e-061.69e-05
genusActinomyces0.1046.96e-061.79e-05
familyCampylobacteraceae0.1037.56e-061.92e-05
speciesEnterococcus_faecalis0.1037.58e-061.92e-05
genusBilophila0.1037.64e-061.93e-05
speciesPrevotella_buccae0.1038.24e-062.07e-05
speciesRoseburia_inulinivorans-0.1038.84e-062.21e-05
classEpsilonproteobacteria0.1029.11e-062.25e-05
orderCampylobacterales0.1029.11e-062.25e-05
speciesParvimonas_unclassified0.1029.82e-062.41e-05
genusParvimonas0.1021.01e-052.46e-05
speciesAlistipes_sp_HGB5-0.1021.01e-052.46e-05
speciesMegamonas_rupellensis0.1011.19e-052.88e-05
familyStreptococcaceae0.11.47e-053.54e-05
speciesErysipelotrichaceae_bacterium_3_1_530.11.57e-053.76e-05
speciesBilophila_unclassified0.0991.64e-053.91e-05
speciesStreptococcus_pasteurianus0.0991.66e-053.94e-05
speciesParabacteroides_unclassified0.0991.71e-054.04e-05
genusRuminococcus-0.0972.45e-055.75e-05
genusStreptococcus0.0972.6e-056.08e-05
orderBacillales0.0972.73e-056.35e-05
speciesLactobacillus_mucosae0.0963.06e-057.08e-05
genusSutterella-0.0963.14e-057.23e-05
speciesRuminococcus_callidus-0.0963.31e-057.58e-05
speciesC2likevirus_unclassified-0.0963.43e-057.82e-05
genusHoldemania0.0954.04e-059.17e-05
genusC2likevirus-0.0944.33e-059.78e-05
speciesStreptococcus_mitis_oralis_pneumoniae0.0944.7e-050.000106
speciesVeillonella_parvula0.0944.77e-050.000107
speciesClostridium_bartlettii0.0935.83e-050.00013
speciesSubdoligranulum_sp_4_3_54A2FAA0.0926.19e-050.000137
speciesButyrivibrio_crossotus-0.0926.31e-050.000139
genusLachnospiraceae_noname0.0926.47e-050.000142
speciesStreptococcus_infantarius0.0918.24e-050.00018
familyLactobacillaceae0.0918.72e-050.00019
speciesCollinsella_aerofaciens-0.099.02e-050.000195
speciesEnterococcus_faecium0.099.72e-050.000209
speciesClostridium_sp_KLE_17550.090.0001030.000221
genusDorea-0.0890.000110.000235
speciesEnterobacteria_phage_HK5440.0890.0001130.00024
speciesMegamonas_hypermegale0.0890.0001210.000255
speciesAlistipes_onderdonkii-0.0890.0001210.000255
familyMyoviridae0.0880.0001350.000283
genusLactobacillus0.0880.0001460.000305
speciesPorphyromonas_uenonis0.0870.0001550.000322
speciesBacteroides_massiliensis0.0870.0001720.000356
speciesEubacterium_sp_3_1_310.0860.000210.000433
classMethanobacteria-0.0850.0002150.000437
orderMethanobacteriales-0.0850.0002150.000437
familyMethanobacteriaceae-0.0850.0002150.000437
speciesBacteroides_thetaiotaomicron0.0850.0002390.000484
speciesClostridium_sp_L2_50-0.0840.0002620.000528
familyPeptostreptococcaceae0.0840.0002920.000586
genusPrevotella0.0830.0003050.00061
speciesPeptostreptococcus_anaerobius0.0830.0003220.000641
speciesMethanobrevibacter_smithii-0.0830.0003260.000647
phylumEuryarchaeota-0.0830.0003330.000658
speciesLactobacillus_crispatus0.0820.0003590.000706
classNegativicutes0.0820.0003730.000728
orderSelenomonadales0.0820.0003730.000728
genusMethanobrevibacter-0.0820.0003880.000752
speciesStreptococcus_salivarius0.0820.0003890.000752
speciesStreptococcus_thermophilus-0.0810.0004490.000865
speciesAcidaminococcus_fermentans0.080.0005310.00102
speciesMegasphaera_elsdenii0.080.0005640.00108
speciesCollinsella_intestinalis0.0780.0006960.00132
speciesStreptococcus_australis0.0780.0007090.00134
speciesCollinsella_tanakaei0.0780.0007120.00134
speciesBacteroides_uniformis-0.0770.000910.00171
speciesRuminococcus_torques0.0770.0009270.00174
speciesBacteroides_cellulosilyticus-0.0760.0009570.00178
speciesLactobacillus_fermentum0.0760.0009580.00178
speciesVeillonella_dispar0.0760.001010.00187
speciesBacteroides_sp_3_1_190.0760.001030.0019
genusVeillonella0.0750.001120.00206
orderAeromonadales0.0750.001230.00225
speciesCoprobacillus_sp_D60.0740.001350.00246
speciesAggregatibacter_segnis0.0740.001380.00251
genusButyricicoccus0.0730.001570.00283
speciesButyricicoccus_pullicaecorum0.0730.001570.00283
speciesRuminococcus_obeum-0.0730.001670.003
speciesPrevotella_copri0.0720.001740.00311
speciesBacteroides_eggerthii0.0720.001790.00319
familyVeillonellaceae0.0710.001990.00353
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0710.0020.00354
speciesParaprevotella_clara-0.0710.00210.0037
speciesLactobacillus_vaginalis0.070.002380.00418
speciesCampylobacter_concisus0.070.00240.0042
speciesRuminococcus_champanellensis-0.070.002510.00437
genusAggregatibacter0.070.002560.00444
speciesErysipelotrichaceae_bacterium_6_1_450.0690.002660.0046
speciesBifidobacterium_breve0.0690.002990.00515
speciesBifidobacterium_pseudocatenulatum0.0680.003160.0054
speciesParaprevotella_unclassified-0.0680.003160.0054
genusParaprevotella-0.0680.003240.00552
speciesCoprobacillus_sp_29_10.0680.003380.00574
speciesRuminococcus_bromii-0.0670.003520.00595
genusLambdalikevirus0.0670.003570.00602
speciesHoldemania_sp_AP20.0670.003710.00623
speciesEubacterium_hallii-0.0670.003890.00651
speciesBifidobacterium_catenulatum-0.0660.004160.00694
speciesPrevotella_stercorea0.0660.004330.0072
speciesClostridium_leptum-0.0660.00440.00729
speciesStreptococcus_gordonii0.0660.004450.00734
speciesBacteroides_oleiciplenus0.0660.004510.00742
speciesOdoribacter_unclassified-0.0650.004940.0081
speciesDorea_formicigenerans-0.0650.004960.0081
speciesAlistipes_indistinctus-0.0640.005270.00858
speciesParabacteroides_sp_D13-0.0640.005870.00952
speciesLeuconostoc_lactis0.0640.005990.00968
speciesBacteroides_nordii0.0620.0070.0113
speciesSutterella_parvirubra0.0620.007030.0113
speciesPrevotella_bivia0.0610.008390.0134
speciesAlistipes_sp_AP11-0.0610.008420.0134
familySutterellaceae-0.060.009260.0147
speciesParabacteroides_goldsteinii0.060.009690.0153
speciesBacteroides_xylanisolvens0.0590.01050.0166
speciesHoldemania_filiformis0.0590.01060.0167
genusSutterellaceae_unclassified0.0590.01080.0169
genusCollinsella-0.0590.0110.0172
familyPropionibacteriaceae-0.0590.01110.0173
speciesLachnospiraceae_bacterium_1_1_57FAA0.0580.01150.0179
speciesStreptococcus_vestibularis0.0580.0120.0186
orderBurkholderiales-0.0570.01360.021
orderActinomycetales0.0570.01370.0211
speciesDialister_invisus-0.0550.01650.0253
genusPeptostreptococcaceae_noname0.0550.01830.028
speciesParaprevotella_xylaniphila-0.0540.01950.0297
speciesBacteroides_clarus0.0530.0210.0319
speciesErysipelotrichaceae_bacterium_21_30.0530.02110.0319
speciesVeillonella_atypica0.0530.02180.0329
speciesPeptostreptococcaceae_noname_unclassified-0.0520.02330.035
speciesBacteroides_salyersiae0.0520.02340.0351
genusPorphyromonas0.0520.02380.0355
speciesDesulfovibrio_desulfuricans0.0520.02470.0368
classBetaproteobacteria-0.0520.02520.0374
speciesPropionibacterium_freudenreichii-0.0510.02850.0422
speciesLactobacillus_acidophilus-0.0510.0290.0428
speciesMegamonas_funiformis0.050.03060.045
speciesBacteroides_plebeius0.050.03070.045
speciesParabacteroides_merdae-0.0490.03240.0473
familySiphoviridae-0.0480.03790.0552
speciesBacteroides_sp_4_3_47FAA-0.0480.03890.0565
speciesBacteroides_intestinalis0.0480.040.0579
speciesBifidobacterium_angulatum-0.0470.04050.0585
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0470.04310.062
speciesEubacterium_biforme-0.0460.04730.0679
speciesPorphyromonas_asaccharolytica0.0460.04770.0682
speciesRuminococcus_sp_5_1_39BFAA-0.0450.05020.0715
speciesLactococcus_phage_phi7-0.0450.05030.0715
genusRuminococcaceae_noname-0.0450.05370.0759
speciesRuminococcaceae_bacterium_D16-0.0450.05370.0759
speciesLactobacillus_sanfranciscensis0.0440.05440.0766
genusParabacteroides0.0440.05590.0785
genusDialister-0.0440.05680.0796
speciesMethanobrevibacter_unclassified-0.0440.05720.0799
speciesLactobacillus_gasseri0.0440.05840.0813
genusCoriobacteriaceae_noname0.0430.06080.0844
speciesBacteroides_finegoldii0.0430.06130.0848
speciesVeillonella_unclassified0.0430.06450.089
familyViruses_noname0.0430.06490.089
genusViruses_noname0.0430.06490.089
speciesCoriobacteriaceae_bacterium_phI0.0420.06750.0923
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0420.06930.0945
genusTunalikevirus0.0420.06970.0948
familyAcidaminococcaceae0.0420.070.0949
speciesParabacteroides_johnsonii0.0410.07490.101
speciesParabacteroides_distasonis0.0410.07520.101
genusPropionibacterium-0.0410.07570.102
speciesOscillibacter_sp_KLE_1728-0.0410.07830.105
speciesLactobacillus_amylovorus0.0410.07870.105
genusSlackia0.0410.07910.105
genusDesulfovibrio0.040.08760.116
genusSiphoviridae_noname-0.0390.09470.126
speciesLactococcus_phage_jm2-0.0380.0970.128
speciesRothia_mucilaginosa0.0380.09750.129
speciesStreptococcus_mutans0.0380.10.131
speciesLactococcus_phage_936_sensu_lato-0.0380.1030.135
familyPorphyromonadaceae-0.0370.1080.141
familyLachnospiraceae-0.0370.1090.142
genusSuccinatimonas0.0370.1120.145
speciesSuccinatimonas_hippei0.0370.1120.145
orderCoriobacteriales0.0370.1130.146
familyCoriobacteriaceae0.0370.1130.146
speciesStreptococcus_sanguinis0.0350.1320.17
speciesBacteroides_coprophilus-0.0350.1340.172
speciesLactobacillus_reuteri0.0350.1350.173
genusParasutterella-0.0340.1380.176
speciesParasutterella_excrementihominis-0.0340.1380.176
speciesKlebsiella_phage_KP360.0330.1510.191
speciesTuricibacter_unclassified-0.0330.1510.191
familySuccinivibrionaceae0.0330.1520.192
familyMicrococcaceae0.0330.1530.193
genusRothia0.0330.1560.196
speciesBacteroides_sp_2_1_22-0.0330.1590.199
speciesLactococcus_phage_bIL67-0.0320.1680.21
genusAcidaminococcaceae_unclassified-0.0320.1730.215
genusHaemophilus-0.030.1880.234
speciesAcidaminococcus_unclassified0.0290.2060.255
speciesHaemophilus_parainfluenzae-0.0290.2090.258
speciesLactococcus_phage_P680-0.0290.2110.26
genusAnaerotruncus-0.0290.2160.266
speciesEggerthella_sp_1_3_56FAA0.0280.220.27
orderPasteurellales-0.0280.2240.272
familyPasteurellaceae-0.0280.2240.272
speciesRoseburia_unclassified-0.0280.2240.272
speciesBacteroides_ovatus0.0280.2330.283
speciesLactobacillus_ruminis-0.0270.2380.288
genusTuricibacter-0.0270.2440.295
speciesDesulfovibrio_piger-0.0260.2540.306
genusLeuconostoc0.0260.2550.306
speciesBacteroides_faecis0.0260.2580.309
speciesHoldemania_unclassified-0.0260.2630.314
phylumActinobacteria0.0250.2850.339
classActinobacteria0.0250.2850.339
familyStaphylococcaceae0.0240.2910.345
speciesStreptococcus_phage_Sfi210.0240.3030.358
speciesBifidobacterium_bifidum0.0230.320.378
speciesDialister_succinatiphilus0.0220.340.4
genusOlsenella0.0220.3420.402
speciesTuricibacter_sanguinis-0.0210.3560.417
speciesBacteroides_dorei-0.0210.3590.419
genusMyoviridae_noname0.020.3870.451
speciesParabacteroides_sp_20_3-0.020.3980.463
familyPodoviridae0.0190.4180.485
speciesLactobacillus_plantarum0.0180.4470.517
familyOscillospiraceae0.0170.4540.523
genusOscillibacter0.0170.4540.523
speciesLactococcus_lactis-0.0170.4570.525
speciesOscillibacter_sp_KLE_17450.0160.5020.575
genusLactococcus0.0150.5070.579
speciesBacteroides_vulgatus-0.0150.5170.589
orderCaudovirales-0.0150.5270.599
phylumViruses_noname-0.0140.5330.603
classViruses_noname-0.0140.5330.603
genusGordonibacter-0.0140.5360.604
speciesGordonibacter_pamelaeae-0.0140.5360.604
speciesMitsuokella_multacida0.0140.540.607
speciesDorea_unclassified0.0140.5420.608
speciesLactobacillus_rhamnosus0.0140.5510.615
speciesRuminococcus_sp_JC3040.0140.5510.615
speciesBacteroides_sp_1_1_60.0140.5590.622
familyOxalobacteraceae-0.0120.5950.661
genusOxalobacter-0.0120.6050.669
speciesOxalobacter_formigenes-0.0120.6050.669
speciesOscillibacter_unclassified0.0110.6210.685
speciesLactobacillus_delbrueckii-0.010.6650.732
speciesBifidobacterium_longum-0.010.6780.744
speciesStreptococcus_parasanguinis0.010.6810.746
speciesBacteroides_fluxus0.0090.6910.755
speciesOlsenella_unclassified0.0090.6940.757
genusStaphylococcus0.0090.7030.765
familyBurkholderiales_noname-0.0090.7120.773
speciesClostridium_spiroforme-0.0080.7320.792
genusBurkholderiales_noname-0.0080.7350.792
speciesBurkholderiales_bacterium_1_1_47-0.0080.7350.792
speciesHaemophilus_paraphrohaemolyticus0.0080.7410.796
speciesBifidobacterium_animalis-0.0080.7420.796
speciesAlistipes_unclassified0.0070.7490.802
speciesLactobacillus_casei_paracasei-0.0070.7730.825
speciesBacteroides_caccae0.0060.7820.833
speciesEubacterium_cylindroides0.0060.7860.836
orderViruses_noname0.0060.7950.843
genusActinobacillus0.0060.7990.844
speciesActinobacillus_unclassified0.0060.7990.844
classBacteroidia0.0060.8110.852
orderBacteroidales0.0060.8110.852
phylumBacteroidetes0.0060.8120.852
speciesBacteroides_salanitronis-0.0040.8510.889
speciesBacteroides_barnesiae0.0040.8510.889
genusAnaerostipes0.0040.8660.902
orderPseudomonadales-0.0040.8710.906
genusButyricimonas0.0040.8780.907
speciesButyricimonas_synergistica0.0040.8780.907
genusMethanosphaera0.0030.8820.907
speciesHaemophilus_sputorum-0.0030.8820.907
speciesMethanosphaera_stadtmanae0.0030.8820.907
familyPrevotellaceae0.0030.8940.915
speciesBacteroides_coprocola0.0030.8940.915
orderBifidobacteriales0.0030.910.928
familyBifidobacteriaceae0.0030.910.928
speciesSlackia_piriformis0.0020.920.936
speciesCollinsella_unclassified-0.0020.9290.943
genusCatenibacterium-0.0020.9350.945
speciesCatenibacterium_mitsuokai-0.0020.9350.945
speciesBlautia_hydrogenotrophica0.0010.9720.98
genusBifidobacterium-0.0010.980.983
genusPhascolarctobacterium0.0010.9810.983
speciesPhascolarctobacterium_succinatutens0.0010.9810.983
speciesOdoribacter_laneus0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.009926161020.002415900693751.76229685338e-063281.09061
Liver cirrhosisChina1201140.00412443644070.003249387123640.000125445033862533517.9213
Type II diabetesChina1831850.008693426196240.007303737279960.0014171837911118416.08414
Type II diabetesDenmark752770.00289458713530.0019406678260.00424039957905340911.1745
Colorectal cancerAustria64350.007179189763850.002989824267680.032561205350220186.82772
Ulcerative colitisSpain78660.002433313243340.002415900693750.0725974433619589619.4498
Type II diabetesSweden53920.004100285260860.002794841908280.154784910463548918.5879
Rheumatoid arthritisChina127980.004947143272110.004829803101460.2457226606331031634.4016
ObesityDenmark1691230.002281382477910.001581449583140.42848887691771558.2519
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382