MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-13 21:09:16 PST
Job id & description: 1649, GRDH1
Query type: protein
Count queries & homologs: 61, 3
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
GrdH%fig|1588751.3.peg.1297|HMPREF3188_01317|2186470CompleteK10670NOG304585Firmicutesunknown100.0100.083.57
GrdH%fig|1588751.3.peg.1297|HMPREF3188_01317|2189645CompleteK10670NOG304585Firmicutesunknown100.0100.083.29
GrdH%fig|1235798.3.peg.1335|VBIDorSp261998_1335|2019273CompleteK10670NOG304585FirmicutesDorea80.1496.4184.05
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesDorea_formicigenerans0.9040.00.0
genusDorea0.734.35e-3111.03e-308
speciesEubacterium_hallii0.5353.46e-1395.44e-137
speciesRuminococcus_obeum0.5241.48e-1321.75e-130
orderCoriobacteriales0.5121.88e-1251.48e-123
familyCoriobacteriaceae0.5121.88e-1251.48e-123
speciesDorea_longicatena0.5122.77e-1251.87e-123
speciesRuminococcus_sp_5_1_39BFAA0.4921.92e-1141.13e-112
speciesEubacterium_ramulus0.4483.72e-931.95e-91
speciesCoprococcus_catus0.4464.49e-922.12e-90
phylumActinobacteria0.4221.26e-814.96e-80
classActinobacteria0.4221.26e-814.96e-80
speciesCoprococcus_comes0.4086.27e-762.09e-74
classClostridia0.4086.63e-762.09e-74
orderClostridiales0.4086.64e-762.09e-74
phylumBacteroidetes-0.4058.65e-752.32e-73
classBacteroidia-0.4058.86e-752.32e-73
orderBacteroidales-0.4058.86e-752.32e-73
phylumFirmicutes0.4051.45e-743.6e-73
genusCollinsella0.4042.61e-746.16e-73
genusRuminococcus0.4036.31e-741.42e-72
speciesCollinsella_aerofaciens0.48.79e-731.89e-71
familyLachnospiraceae0.3891.7e-683.49e-67
speciesLachnospiraceae_bacterium_5_1_63FAA0.3875.91e-681.16e-66
speciesAnaerostipes_hadrus0.3878.12e-681.53e-66
speciesRuminococcus_torques0.3832.62e-664.76e-65
genusCoprococcus0.3824.17e-667.29e-65
genusBlautia0.3769.53e-641.61e-62
genusAdlercreutzia0.3595.96e-589.38e-57
speciesAdlercreutzia_equolifaciens0.3595.96e-589.38e-57
familyRuminococcaceae0.3513.41e-555.19e-54
genusEubacterium0.3382.36e-513.48e-50
familyEubacteriaceae0.3382.5e-513.58e-50
orderBifidobacteriales0.3322.32e-493.13e-48
familyBifidobacteriaceae0.3322.32e-493.13e-48
genusBifidobacterium0.3322.75e-493.61e-48
speciesStreptococcus_thermophilus0.3175.59e-457.13e-44
speciesEubacterium_rectale0.3137.2e-448.94e-43
familyBacteroidaceae-0.3131.16e-431.37e-42
genusBacteroides-0.3131.16e-431.37e-42
genusAnaerostipes0.3073.41e-423.93e-41
speciesBifidobacterium_longum0.3074.2e-424.72e-41
familyStreptococcaceae0.2917.45e-388.18e-37
familyActinomycetaceae0.2919.92e-381.06e-36
genusStreptococcus0.2861.58e-361.66e-35
genusActinomyces0.2852.11e-362.17e-35
speciesBifidobacterium_adolescentis0.2773.54e-343.56e-33
genusGordonibacter0.2741.81e-331.74e-32
speciesGordonibacter_pamelaeae0.2741.81e-331.74e-32
classBacilli0.2684.99e-324.71e-31
orderLactobacillales0.2676.11e-325.65e-31
speciesEubacterium_ventriosum0.2661.27e-311.15e-30
speciesDorea_unclassified-0.2643.56e-313.17e-30
speciesEggerthella_lenta0.2611.35e-301.18e-29
speciesBlautia_hydrogenotrophica0.2587.85e-306.74e-29
orderActinomycetales0.2547.96e-296.71e-28
genusLachnospiraceae_noname0.2496.84e-285.66e-27
speciesStreptococcus_salivarius0.2381.55e-251.26e-24
speciesStreptococcus_parasanguinis0.2331.5e-241.2e-23
speciesClostridium_leptum0.2331.79e-241.41e-23
genusParabacteroides-0.2291.06e-238.2e-23
speciesStreptococcus_sanguinis0.2121.9e-201.45e-19
genusSolobacterium0.2112.4e-201.77e-19
speciesSolobacterium_moorei0.2112.4e-201.77e-19
genusHoldemania0.2097.7e-205.59e-19
familyBacillales_noname0.2089.61e-206.77e-19
genusGemella0.2089.61e-206.77e-19
speciesBacteroides_thetaiotaomicron-0.2062.24e-191.55e-18
speciesSubdoligranulum_unclassified0.2045.8e-193.97e-18
genusSubdoligranulum0.2011.67e-181.13e-17
familyPorphyromonadaceae-0.22.29e-181.52e-17
speciesRuminococcus_bromii0.1977.01e-184.6e-17
orderBacillales0.1979.22e-185.96e-17
genusEggerthella0.1934.24e-172.7e-16
familyPeptostreptococcaceae0.1858.3e-165.22e-15
classErysipelotrichia0.1795.77e-153.49e-14
orderErysipelotrichales0.1795.77e-153.49e-14
familyErysipelotrichaceae0.1795.77e-153.49e-14
genusLactococcus0.1761.79e-141.07e-13
speciesStreptococcus_vestibularis0.1761.89e-141.12e-13
speciesLactococcus_lactis0.1752.82e-141.64e-13
speciesEggerthella_unclassified0.1743.04e-141.75e-13
speciesFusobacterium_ulcerans-0.1735.84e-143.32e-13
speciesBifidobacterium_bifidum0.1726.14e-143.45e-13
genusFaecalibacterium0.1719.92e-145.44e-13
speciesFaecalibacterium_prausnitzii0.1719.92e-145.44e-13
speciesLachnospiraceae_bacterium_3_1_46FAA0.171.18e-136.4e-13
familyClostridiales_Family_XI_Incertae_Sedis0.171.3e-136.97e-13
genusPeptostreptococcaceae_noname0.1691.92e-131.02e-12
speciesPropionibacterium_freudenreichii0.1673.29e-131.73e-12
speciesAnaerostipes_unclassified-0.1674e-132.07e-12
genusPropionibacterium0.1657.29e-133.74e-12
speciesHoldemania_filiformis0.1621.71e-128.68e-12
speciesPeptostreptococcaceae_noname_unclassified0.1621.77e-128.89e-12
genusPeptostreptococcus0.1551.65e-118.2e-11
speciesRuminococcus_lactaris0.1541.99e-119.78e-11
speciesOlsenella_unclassified0.1542.13e-111.04e-10
speciesBifidobacterium_animalis0.1532.65e-111.28e-10
speciesLactobacillus_casei_paracasei0.1515.22e-112.49e-10
familyPropionibacteriaceae0.1515.48e-112.59e-10
speciesLactobacillus_delbrueckii0.158.01e-113.72e-10
familyLactobacillaceae0.158.03e-113.72e-10
phylumProteobacteria-0.1491.05e-104.81e-10
phylumFusobacteria-0.1481.12e-104.99e-10
classFusobacteriia-0.1481.12e-104.99e-10
orderFusobacteriales-0.1481.12e-104.99e-10
speciesLachnospiraceae_bacterium_1_4_56FAA0.1481.19e-105.25e-10
genusOlsenella0.1471.5e-106.56e-10
speciesParvimonas_unclassified0.1471.81e-107.81e-10
genusParvimonas0.1471.82e-107.81e-10
speciesRoseburia_inulinivorans0.1461.98e-108.42e-10
familyFusobacteriaceae-0.1462.11e-108.86e-10
genusErysipelotrichaceae_noname0.1462.12e-108.86e-10
genusLeuconostoc0.1452.71e-101.12e-09
speciesBacteroides_xylanisolvens-0.1443.74e-101.54e-09
speciesEubacterium_biforme0.1435.75e-102.34e-09
speciesStreptococcus_gordonii0.1435.92e-102.39e-09
genusFusobacterium-0.1426.52e-102.61e-09
speciesGemella_morbillorum0.1427.05e-102.8e-09
speciesLachnospiraceae_bacterium_1_1_57FAA0.1418.68e-103.41e-09
speciesStreptococcus_anginosus0.1419.33e-103.64e-09
speciesRoseburia_hominis0.141.08e-094.18e-09
genusLactobacillus0.141.14e-094.37e-09
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1391.46e-095.56e-09
speciesStreptococcus_australis0.1391.6e-096.04e-09
genusRothia0.1382.19e-098.2e-09
familyMicrococcaceae0.1382.29e-098.51e-09
speciesStreptococcus_mutans0.1372.48e-099.15e-09
speciesBacteroides_vulgatus-0.1363.48e-091.27e-08
speciesClostridium_nexile-0.1363.59e-091.3e-08
speciesHoldemania_unclassified0.1354.18e-091.51e-08
speciesKlebsiella_pneumoniae-0.1355.01e-091.79e-08
speciesStreptococcus_mitis_oralis_pneumoniae0.1345.75e-092.04e-08
genusTuricibacter0.1346.55e-092.31e-08
speciesRuminococcus_sp_JC3040.1337.73e-092.7e-08
speciesBacteroides_fragilis-0.1329.62e-093.34e-08
speciesErysipelotrichaceae_bacterium_21_30.1311.39e-084.79e-08
speciesBifidobacterium_catenulatum0.1282.63e-089e-08
speciesTuricibacter_unclassified0.1273.2e-081.09e-07
speciesPrevotella_buccae-0.1273.95e-081.33e-07
speciesErysipelotrichaceae_bacterium_6_1_450.1255.79e-081.94e-07
speciesBacteroides_stercoris-0.1256.04e-082.01e-07
speciesEubacterium_cylindroides0.1246.74e-082.22e-07
speciesLactobacillus_rhamnosus0.1238.45e-082.77e-07
speciesTuricibacter_sanguinis0.1239.15e-082.98e-07
familyLeuconostocaceae0.1221.22e-073.94e-07
speciesRoseburia_intestinalis0.1211.55e-074.98e-07
genusKlebsiella-0.121.73e-075.52e-07
speciesRothia_mucilaginosa0.1192.34e-077.41e-07
speciesFusobacterium_mortiferum-0.1183.33e-071.05e-06
speciesEubacterium_siraeum0.1183.36e-071.05e-06
speciesClostridium_bartlettii0.1173.74e-071.16e-06
speciesLactobacillus_plantarum0.1174.06e-071.25e-06
classGammaproteobacteria-0.1131.01e-063.1e-06
speciesErysipelotrichaceae_bacterium_2_2_44A0.1121.24e-063.66e-06
phylumVerrucomicrobia0.1121.25e-063.66e-06
classVerrucomicrobiae0.1121.25e-063.66e-06
orderVerrucomicrobiales0.1121.25e-063.66e-06
familyVerrucomicrobiaceae0.1121.25e-063.66e-06
genusAkkermansia0.1121.25e-063.66e-06
speciesAkkermansia_muciniphila0.1121.25e-063.66e-06
familySiphoviridae0.1111.35e-063.93e-06
genusRoseburia0.1111.45e-064.2e-06
genusC2likevirus0.1111.55e-064.46e-06
phylumViruses_noname0.1111.67e-064.75e-06
classViruses_noname0.1111.67e-064.75e-06
speciesPeptostreptococcus_anaerobius0.111.75e-064.95e-06
genusPeptoniphilus0.111.84e-065.17e-06
speciesC2likevirus_unclassified0.111.86e-065.19e-06
genusDialister0.1092.41e-066.69e-06
speciesFusobacterium_varium-0.1082.78e-067.67e-06
speciesMethanobrevibacter_smithii0.1082.81e-067.71e-06
speciesEscherichia_coli-0.1073.44e-069.39e-06
genusMegasphaera-0.1073.62e-069.82e-06
speciesBacteroides_ovatus-0.1064.35e-061.17e-05
genusMethanobrevibacter0.1055.21e-061.4e-05
phylumEuryarchaeota0.1055.25e-061.4e-05
genusMitsuokella0.1055.3e-061.41e-05
speciesEggerthella_sp_1_3_56FAA0.1055.35e-061.41e-05
speciesClostridium_clostridioforme-0.1055.48e-061.44e-05
speciesRuminococcus_callidus0.1055.89e-061.54e-05
speciesPeptostreptococcus_stomatis0.1046.11e-061.58e-05
genusEscherichia-0.1046.34e-061.64e-05
orderEnterobacteriales-0.1037.76e-061.98e-05
familyEnterobacteriaceae-0.1037.76e-061.98e-05
speciesLactococcus_phage_P6800.1038.46e-062.15e-05
classMethanobacteria0.1029.1e-062.27e-05
orderMethanobacteriales0.1029.1e-062.27e-05
familyMethanobacteriaceae0.1029.1e-062.27e-05
speciesMitsuokella_unclassified0.1029.25e-062.3e-05
genusSiphoviridae_noname0.1021.02e-052.52e-05
speciesBacteroides_intestinalis-0.11.54e-053.79e-05
speciesOdoribacter_unclassified0.11.56e-053.82e-05
speciesHaemophilus_parainfluenzae-0.0991.98e-054.82e-05
genusHaemophilus-0.0982.02e-054.89e-05
speciesSlackia_piriformis0.0982.37e-055.71e-05
genusCoriobacteriaceae_noname0.0972.63e-056.3e-05
speciesButyrivibrio_unclassified0.0963e-057.15e-05
speciesClostridiales_bacterium_1_7_47FAA-0.0963.05e-057.23e-05
speciesLactobacillus_gasseri0.0963.08e-057.27e-05
classBetaproteobacteria-0.0963.5e-058.22e-05
orderPasteurellales-0.0953.71e-058.63e-05
familyPasteurellaceae-0.0953.71e-058.63e-05
speciesSubdoligranulum_sp_4_3_54A2FAA0.0944.65e-050.000108
speciesCoriobacteriaceae_bacterium_phI0.0944.67e-050.000108
genusSlackia0.0935.48e-050.000125
speciesDialister_invisus0.0935.48e-050.000125
orderCaudovirales0.0926.74e-050.000153
speciesParabacteroides_unclassified-0.0927.02e-050.000159
familyClostridiales_noname-0.0918.21e-050.000185
speciesPrevotella_stercorea-0.099.11e-050.000204
orderBurkholderiales-0.099.29e-050.000207
speciesPorphyromonas_asaccharolytica0.090.0001030.000228
speciesOdoribacter_splanchnicus-0.090.0001040.000229
orderViruses_noname0.0890.0001260.000277
speciesMegasphaera_micronuciformis-0.0880.0001320.000288
genusPorphyromonas0.0880.0001440.000313
speciesBacteroides_uniformis-0.0880.0001450.000314
speciesBacteroides_nordii-0.0880.0001480.000319
speciesClostridium_hathewayi-0.0860.0001870.000401
speciesClostridium_bolteae-0.0860.0002090.000446
familyRikenellaceae-0.0850.0002160.000457
genusAlistipes-0.0850.0002160.000457
genusClostridiales_noname-0.0840.0002630.000554
speciesLachnospiraceae_bacterium_7_1_58FAA0.0830.000330.000692
familySutterellaceae-0.0830.0003380.000706
genusButyrivibrio0.0820.0003830.000796
genusClostridiaceae_noname0.0820.000390.000804
speciesClostridiaceae_bacterium_JC1180.0820.000390.000804
genusPseudoflavonifractor0.0810.0004830.000987
speciesPseudoflavonifractor_capillosus0.0810.0004830.000987
genusRuminococcaceae_noname0.080.0005650.00114
speciesRuminococcaceae_bacterium_D160.080.0005650.00114
genusFlavonifractor-0.0790.0006450.0013
speciesFlavonifractor_plautii-0.0790.0006450.0013
genusCatenibacterium0.0770.0008370.00167
speciesCatenibacterium_mitsuokai0.0770.0008370.00167
genusOdoribacter-0.0760.0009770.00194
genusPantoea-0.0760.0009860.00194
speciesPantoea_unclassified-0.0760.0009860.00194
speciesErysipelotrichaceae_bacterium_3_1_530.0760.001040.00204
genusSutterellaceae_unclassified-0.0760.001050.00205
speciesBacteroides_oleiciplenus-0.0750.001220.00237
speciesParabacteroides_merdae-0.0750.001240.0024
speciesClostridium_spiroforme0.0740.001280.00247
speciesBifidobacterium_pseudocatenulatum0.0740.001380.00265
speciesCoprococcus_sp_ART55_10.0730.001520.0029
speciesAnaerotruncus_colihominis0.0730.001550.00295
genusBarnesiella0.0730.001620.00306
speciesBarnesiella_intestinihominis0.0730.001620.00306
speciesAnaerotruncus_unclassified0.0730.00170.0032
speciesMethanobrevibacter_unclassified0.0720.001810.00338
speciesMegasphaera_unclassified-0.0720.001810.00338
speciesMegamonas_funiformis-0.0720.001960.00364
speciesAlistipes_shahii-0.0710.002230.00413
speciesLactobacillus_salivarius-0.070.002560.00472
speciesOdoribacter_laneus0.0690.002690.00494
speciesBifidobacterium_dentium0.0690.002940.00538
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0680.00320.00583
speciesParabacteroides_goldsteinii-0.0680.003410.00619
speciesAcidaminococcus_unclassified0.0670.00360.00651
speciesLachnospiraceae_bacterium_2_1_58FAA0.0670.003950.00712
speciesClostridium_sp_L2_500.0650.004940.00887
speciesLactococcus_phage_bIL670.0650.005050.00903
genusPrevotella-0.0640.005410.00964
speciesEnterobacter_cloacae-0.0640.005770.0102
speciesMegamonas_unclassified-0.0640.005880.0104
genusMegamonas-0.0640.005890.0104
speciesSutterella_wadsworthensis0.0630.006840.012
familyAcidaminococcaceae0.0620.006930.0121
genusPhascolarctobacterium0.0620.007650.0133
speciesPhascolarctobacterium_succinatutens0.0620.007650.0133
speciesVeillonella_dispar-0.060.008910.0154
speciesEnterococcus_faecium0.060.009250.0159
speciesEubacterium_dolichum0.0590.01040.0179
familyMyoviridae-0.0590.01050.018
genusAnaerotruncus0.0580.01190.0203
genusEnterobacter-0.0580.01260.0214
genusVeillonella-0.0570.01350.0228
speciesLactobacillus_acidophilus0.0570.01360.0229
speciesVeillonella_unclassified-0.0570.01380.0232
genusCoprobacter0.0570.0140.0233
speciesCoprobacter_fastidiosus0.0570.0140.0233
speciesClostridium_ramosum-0.0560.01460.0243
speciesMegamonas_rupellensis-0.0560.01470.0243
genusMethanosphaera0.0550.01650.027
speciesMethanosphaera_stadtmanae0.0550.01650.027
speciesAlistipes_sp_AP110.0550.01650.027
speciesPrevotella_copri-0.0550.01760.0287
speciesMegasphaera_elsdenii-0.0550.01820.0296
speciesDialister_succinatiphilus0.0550.01830.0297
genusSutterella0.0540.01950.0315
speciesBacteroides_cellulosilyticus-0.0530.02140.0345
speciesCoprobacillus_sp_D60.0530.02230.0358
speciesVeillonella_atypica-0.0520.02390.0382
speciesVeillonella_parvula-0.0520.02480.0395
genusButyricimonas-0.0520.02520.0399
speciesButyricimonas_synergistica-0.0520.02520.0399
classDeltaproteobacteria-0.0510.02640.0414
orderDesulfovibrionales-0.0510.02640.0414
familyDesulfovibrionaceae-0.0510.02640.0414
genusTunalikevirus-0.0510.0270.0422
familyEnterococcaceae0.0510.02760.043
speciesClostridium_symbiosum-0.050.02930.0455
genusEnterococcus0.050.03030.0469
speciesKlebsiella_unclassified-0.050.03040.0469
speciesLachnospiraceae_bacterium_2_1_46FAA-0.050.03050.0469
speciesAlistipes_unclassified0.050.03130.048
speciesParabacteroides_distasonis-0.050.03230.0493
speciesCoprobacillus_sp_29_10.0490.03420.0521
speciesMegamonas_hypermegale-0.0480.03620.0549
speciesRuminococcus_gnavus-0.0480.03950.0598
genusMorganella-0.0470.04340.0652
speciesMorganella_morganii-0.0470.04340.0652
speciesBlautia_producta0.0440.05580.0836
orderPseudomonadales0.0440.05660.0845
speciesKlebsiella_phage_KP36-0.0440.05680.0846
speciesOscillibacter_sp_KLE_1728-0.0440.05750.0853
genusParaprevotella0.0420.06650.0984
speciesBilophila_unclassified-0.0420.07130.105
familyStaphylococcaceae0.0420.0720.106
genusStaphylococcus0.0410.07350.108
familyOscillospiraceae-0.0410.07520.11
genusOscillibacter-0.0410.07520.11
speciesBacteroides_sp_1_1_6-0.0410.07580.11
speciesCollinsella_unclassified-0.040.08060.116
speciesParaprevotella_unclassified0.040.08070.116
familyBacteroidales_noname0.040.08490.121
genusBacteroidales_noname0.040.08490.121
speciesBacteroidales_bacterium_ph80.040.08490.121
speciesCoprobacillus_unclassified-0.040.08680.124
speciesLeuconostoc_lactis0.0390.08830.126
speciesLactobacillus_sanfranciscensis0.0390.09140.13
speciesLachnospiraceae_bacterium_5_1_57FAA0.0390.09260.131
speciesCoprococcus_eutactus0.0390.09440.133
genusBilophila-0.0390.09520.134
speciesParabacteroides_sp_20_30.0380.09690.136
speciesLachnospiraceae_bacterium_8_1_57FAA0.0380.10.14
genusClostridium-0.0380.1040.145
genusAcidaminococcaceae_unclassified0.0370.1050.145
speciesWeissella_cibaria0.0380.1050.145
speciesEnterobacter_aerogenes-0.0370.1060.146
phylumSynergistetes-0.0370.1120.152
classSynergistia-0.0370.1120.152
orderSynergistales-0.0370.1120.152
familySynergistaceae-0.0370.1120.152
speciesBacteroides_salyersiae-0.0370.1120.152
speciesPorphyromonas_uenonis0.0370.1140.154
speciesBacteroides_dorei-0.0370.1140.154
speciesStreptococcus_pasteurianus-0.0360.1150.155
speciesCitrobacter_unclassified-0.0360.1190.16
genusPyramidobacter-0.0360.120.16
speciesPyramidobacter_piscolens-0.0360.120.16
familyClostridiaceae-0.0360.1250.167
familyPrevotellaceae-0.0350.1270.169
speciesEscherichia_unclassified-0.0340.1380.183
genusParasutterella-0.0340.1390.183
speciesParasutterella_excrementihominis-0.0340.1390.183
speciesLactobacillus_mucosae-0.0330.1490.196
speciesLactococcus_phage_936_sensu_lato0.0320.1610.211
speciesParaprevotella_clara0.0320.1610.211
speciesBifidobacterium_angulatum0.0320.1720.224
speciesAlistipes_finegoldii-0.0320.1720.224
genusWeissella0.0320.1730.224
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0310.1730.224
speciesHoldemania_sp_AP20.0310.1740.224
speciesLactococcus_phage_jm20.0310.1750.225
speciesEubacterium_eligens0.0310.1770.227
speciesCitrobacter_freundii-0.0310.1810.232
speciesButyrivibrio_crossotus0.0310.1850.236
speciesOscillibacter_unclassified-0.030.190.242
speciesClostridium_asparagiforme-0.030.1930.245
speciesLactobacillus_oris0.030.1940.245
speciesAcidaminococcus_fermentans-0.030.1950.246
speciesEubacterium_limosum0.0290.2080.262
speciesEubacterium_sp_3_1_310.0280.220.276
genusBurkholderiales_noname-0.0280.2270.283
speciesBurkholderiales_bacterium_1_1_47-0.0280.2270.283
speciesLactobacillus_vaginalis0.0270.2480.309
genusCitrobacter-0.0260.2580.32
familyBurkholderiales_noname-0.0260.2640.327
speciesSutterella_parvirubra-0.0250.2860.352
speciesRoseburia_unclassified-0.0250.2860.352
speciesPrevotella_bivia0.0240.2970.365
genusMyoviridae_noname-0.0240.2990.367
speciesBacteroides_plebeius-0.0240.3050.373
genusAcidaminococcus0.0240.3070.374
speciesAlistipes_indistinctus0.0230.3110.378
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0230.3190.387
speciesCollinsella_intestinalis0.0230.3220.39
speciesAlistipes_putredinis-0.0220.3370.407
speciesFusobacterium_nucleatum-0.0220.350.419
speciesCollinsella_tanakaei0.0220.350.419
speciesBacteroides_finegoldii-0.0220.350.419
speciesClostridium_citroniae-0.0210.3570.427
speciesLactococcus_garvieae0.0210.3580.427
speciesLactococcus_phage_phi70.0210.3730.443
familyVeillonellaceae-0.0210.3760.446
speciesBacteroides_caccae-0.020.3880.459
speciesBifidobacterium_breve-0.020.3940.465
genusLambdalikevirus-0.020.3960.466
genusProteus-0.020.3980.467
speciesParabacteroides_sp_D13-0.0190.4070.477
speciesBacteroides_sp_4_3_47FAA0.0190.4170.487
speciesCampylobacter_concisus-0.0180.4320.503
speciesBacteroides_coprocola0.0180.4340.505
speciesStreptococcus_phage_Sfi210.0170.450.521
speciesMitsuokella_multacida0.0170.450.521
familyViruses_noname-0.0170.4580.527
genusViruses_noname-0.0170.4580.527
speciesBacteroides_pectinophilus0.0170.4590.527
speciesBacteroides_salanitronis-0.0170.4610.528
genusDesulfovibrio-0.0170.4620.528
speciesAlistipes_senegalensis0.0170.4630.528
speciesParaprevotella_xylaniphila0.0160.4830.549
speciesBacteroides_barnesiae0.0160.4850.55
speciesBacteroides_sp_2_1_220.0160.4920.557
speciesOscillibacter_sp_KLE_17450.0160.4990.563
speciesBacteroides_sp_3_1_19-0.0150.5210.587
genusOxalobacter-0.0150.5250.589
speciesOxalobacter_formigenes-0.0150.5250.589
speciesClostridium_sp_ATCC_BAA_442-0.0140.5320.595
speciesHaemophilus_paraphrohaemolyticus0.0140.5390.601
speciesBilophila_wadsworthia-0.0140.5520.614
speciesBacteroides_coprophilus-0.0130.5620.624
speciesStreptococcus_infantarius-0.0130.570.632
speciesEnterobacteria_phage_HK544-0.0130.5810.642
speciesWeissella_confusa0.0130.5880.648
speciesAlistipes_sp_HGB5-0.0120.5910.65
speciesLactobacillus_reuteri0.0120.5920.65
orderAeromonadales-0.0110.6230.682
speciesAggregatibacter_segnis0.0110.6390.697
classNegativicutes0.0110.6410.697
orderSelenomonadales0.0110.6410.697
familyOxalobacteraceae-0.0110.6420.697
speciesDesulfovibrio_piger-0.010.6520.706
genusCoprobacillus-0.010.6550.707
genusButyricicoccus-0.0090.6870.739
speciesButyricicoccus_pullicaecorum-0.0090.6870.739
speciesBacteroides_massiliensis-0.0090.7120.764
speciesAcidaminococcus_intestini0.0080.7190.77
speciesBacteroides_faecis0.0080.7240.773
speciesRuminococcus_champanellensis0.0080.7310.779
speciesBacteroides_clarus0.0070.7520.799
genusAggregatibacter-0.0070.7590.805
familySuccinivibrionaceae0.0070.7610.805
speciesParabacteroides_johnsonii-0.0070.7690.812
speciesLactobacillus_amylovorus-0.0060.7930.835
speciesLactobacillus_crispatus-0.0060.7990.84
speciesHaemophilus_sputorum0.0060.8010.84
speciesAlistipes_onderdonkii-0.0060.8050.842
speciesDesulfovibrio_desulfuricans-0.0060.810.846
genusCampylobacter-0.0050.820.854
speciesKlebsiella_sp_MS_92_30.0050.8270.86
speciesClostridium_sp_KLE_17550.0050.8330.864
speciesProteus_mirabilis-0.0050.8380.866
speciesClostridium_perfringens0.0050.8380.866
speciesKlebsiella_oxytoca-0.0050.8420.868
speciesLactobacillus_fermentum0.0040.850.874
genusActinobacillus-0.0040.8540.874
speciesActinobacillus_unclassified-0.0040.8540.874
speciesLactobacillus_ruminis0.0040.8680.887
familyPodoviridae0.0040.8750.891
speciesBacteroides_fluxus-0.0040.8760.891
genusSuccinatimonas0.0030.8830.894
speciesSuccinatimonas_hippei0.0030.8830.894
speciesBacteroides_eggerthii-0.0030.9030.913
speciesEnterococcus_faecalis0.0020.9280.936
speciesStreptococcus_lutetiensis-0.0020.9310.937
classEpsilonproteobacteria-0.0020.940.942
orderCampylobacterales-0.0020.940.942
familyCampylobacteraceae-0.0010.9630.963
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Ulcerative colitisSpain78660.003315770109720.00180417893580.0064217394704714584.80966
Rheumatoid arthritisChina127980.001303198953580.0015604041570.025552609631419826.60953
ObesityDenmark1691230.0007946561514530.0006294754332890.04528999225477715.7081
Liver cirrhosisChina1201140.0005404563404240.0005868146681320.228662809271982466.5928
Crohns diseaseSpain17660.002007455179140.00180417893580.317254144211994166.3042
Type II diabetesSweden53920.002962641098290.002558024753490.3506764338261176139.8273
Colorectal cancerAustria64350.003339697126810.002824149199340.5409451797011927565.2152
Type II diabetesDenmark752770.0007395598901960.0007295994285130.6422606338852359377.3363
Type II diabetesChina1831850.0009186829002780.0008844870606110.7785158555612621486.6321
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382