MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-13 21:10:04 PST
Job id & description: 1650, GRDH2
Query type: protein
Count queries & homologs: 68, 6
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
GrdH%fig|1121950.3.peg.2119|SAMN02745243_02780|2019273CompleteK10670NOG304585FirmicutesDorea100.095.8686.49
GrdH%fig|1965591.3.peg.130|2182408CompleteK10670NOG304585unknownunknown100.0100.085.88
GrdH%fig|1745713.3.peg.2966|2185686CompleteK10670NOG304585unknownunknown100.0100.082.13
GrdH%fig|1653435.3.peg.455|1998206CompleteK10670NOG304585Firmicutesunknown100.095.3380.69
GrdH%fig|1745713.3.peg.2966|2182761CompleteK10670NOG304585unknownunknown100.0100.080.98
GrdH%fig|1653435.3.peg.455|2185848CompleteK10670NOG304585unknownunknown100.0100.082.13
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesDorea_formicigenerans0.6641.11e-2375.24e-235
genusDorea0.5594.23e-1549.98e-152
genusBlautia0.5164.99e-1287.85e-126
orderCoriobacteriales0.5122.92e-1252.76e-123
familyCoriobacteriaceae0.5122.92e-1252.76e-123
speciesRuminococcus_torques0.4643.1e-1002.44e-98
speciesRuminococcus_sp_5_1_39BFAA0.4552.04e-961.38e-94
speciesEubacterium_hallii0.4541.56e-959.2e-94
speciesRuminococcus_obeum0.4443.04e-911.59e-89
phylumActinobacteria0.4256.1e-832.62e-81
classActinobacteria0.4256.1e-832.62e-81
phylumBacteroidetes-0.3879.49e-683.28e-66
classBacteroidia-0.3879.72e-683.28e-66
orderBacteroidales-0.3879.72e-683.28e-66
familyLachnospiraceae0.3743.14e-639.88e-62
speciesLachnospiraceae_bacterium_5_1_63FAA0.3686.77e-612e-59
speciesEggerthella_lenta0.3662.83e-607.86e-59
genusEggerthella0.3633.54e-599.28e-58
genusRuminococcus0.3581.14e-572.83e-56
genusLachnospiraceae_noname0.3521.03e-552.43e-54
genusAnaerostipes0.3481.83e-544.11e-53
speciesEggerthella_unclassified0.3443.61e-537.75e-52
speciesDorea_longicatena0.3437.83e-531.61e-51
phylumFirmicutes0.3382.91e-515.72e-50
classClostridia0.3346.46e-501.17e-48
orderClostridiales0.3346.46e-501.17e-48
familyStreptococcaceae0.3291.58e-482.76e-47
genusStreptococcus0.3252.17e-473.66e-46
speciesAnaerostipes_hadrus0.3252.95e-474.8e-46
genusCollinsella0.3145.75e-449.05e-43
familyActinomycetaceae0.3136.84e-441.04e-42
speciesStreptococcus_thermophilus0.3138.53e-441.26e-42
orderBifidobacteriales0.315.43e-437.54e-42
familyBifidobacteriaceae0.315.43e-437.54e-42
genusActinomyces0.317.06e-439.52e-42
genusBifidobacterium0.3082.05e-422.69e-41
genusAdlercreutzia0.3082.58e-423.2e-41
speciesAdlercreutzia_equolifaciens0.3082.58e-423.2e-41
orderLactobacillales0.3067.61e-429.21e-41
genusGordonibacter0.3068.92e-421.03e-40
speciesGordonibacter_pamelaeae0.3068.92e-421.03e-40
classBacilli0.3069.73e-421.09e-40
speciesEubacterium_ramulus0.2892.85e-373.13e-36
speciesLachnospiraceae_bacterium_1_4_56FAA0.2852.55e-362.74e-35
speciesCollinsella_aerofaciens0.284.81e-355.05e-34
speciesBlautia_hydrogenotrophica0.2799.32e-359.56e-34
speciesBifidobacterium_longum0.2759.34e-349.38e-33
speciesLachnospiraceae_bacterium_5_1_57FAA0.2732.39e-332.35e-32
genusSolobacterium0.2724.57e-334.31e-32
speciesSolobacterium_moorei0.2724.57e-334.31e-32
orderActinomycetales0.2725.24e-334.85e-32
familyBacillales_noname0.2637.64e-316.8e-30
genusGemella0.2637.64e-316.8e-30
speciesStreptococcus_salivarius0.2621.09e-309.53e-30
speciesErysipelotrichaceae_bacterium_2_2_44A0.262.57e-302.21e-29
classErysipelotrichia0.2593.86e-303.14e-29
orderErysipelotrichales0.2593.86e-303.14e-29
familyErysipelotrichaceae0.2593.86e-303.14e-29
speciesCoprococcus_catus0.2587.25e-305.8e-29
speciesBlautia_producta0.2531.21e-289.52e-28
speciesStreptococcus_sanguinis0.2481.58e-271.22e-26
speciesCoprococcus_comes0.2455.32e-274.05e-26
orderBacillales0.2456.11e-274.58e-26
speciesStreptococcus_parasanguinis0.2414.54e-263.35e-25
speciesErysipelotrichaceae_bacterium_21_30.246e-264.36e-25
familyBacteroidaceae-0.236.88e-244.85e-23
genusBacteroides-0.236.88e-244.85e-23
familyRuminococcaceae0.2281.65e-231.15e-22
genusCoprobacillus0.2273.31e-232.26e-22
genusHoldemania0.2213.75e-222.53e-21
familyPorphyromonadaceae-0.2149.59e-216.38e-20
genusErysipelotrichaceae_noname0.2088.39e-205.5e-19
speciesCoprobacillus_unclassified0.2053.01e-191.95e-18
genusCoprococcus0.2038.7e-195.55e-18
speciesClostridium_leptum0.2021.2e-187.55e-18
familyPeptostreptococcaceae0.2021.36e-188.45e-18
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1993.68e-182.26e-17
speciesOdoribacter_splanchnicus-0.1942.49e-171.51e-16
speciesStreptococcus_australis0.1925.7e-173.41e-16
familyEubacteriaceae0.1918.63e-175.09e-16
speciesStreptococcus_mutans0.1919.46e-175.51e-16
genusLactococcus0.199.73e-175.6e-16
genusEubacterium0.191.02e-165.8e-16
familyClostridiales_Family_XI_Incertae_Sedis0.191.07e-166.01e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.191.26e-167e-16
genusParabacteroides-0.191.39e-167.63e-16
speciesStreptococcus_vestibularis0.1873.06e-161.66e-15
genusPeptostreptococcaceae_noname0.1864.59e-162.46e-15
speciesLachnospiraceae_bacterium_2_1_58FAA0.1858.47e-164.49e-15
speciesLachnospiraceae_bacterium_6_1_63FAA0.1849.95e-165.22e-15
speciesErysipelotrichaceae_bacterium_6_1_450.1841.01e-155.24e-15
genusPeptostreptococcus0.1841.22e-156.26e-15
speciesStreptococcus_gordonii0.1822.4e-151.22e-14
genusOdoribacter-0.1812.68e-151.35e-14
speciesLactococcus_lactis0.1813.65e-151.81e-14
speciesStreptococcus_anginosus0.183.8e-151.87e-14
speciesClostridium_ramosum0.1796.97e-153.39e-14
speciesAlistipes_shahii-0.1787.95e-153.83e-14
speciesClostridium_clostridioforme0.1761.69e-148.06e-14
speciesBifidobacterium_animalis0.1752.29e-141.08e-13
speciesBacteroides_thetaiotaomicron-0.1743.3e-141.54e-13
speciesRuminococcus_gnavus0.1734.8e-142.22e-13
speciesEubacterium_dolichum0.171.39e-136.37e-13
speciesLactobacillus_casei_paracasei0.1674.07e-131.85e-12
speciesLachnospiraceae_bacterium_1_1_57FAA0.1665.46e-132.45e-12
speciesLactobacillus_delbrueckii0.1657.2e-133.21e-12
genusLeuconostoc0.1648.33e-133.67e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1631.32e-125.77e-12
speciesSubdoligranulum_sp_4_3_54A2FAA0.1612.34e-121.01e-11
familyClostridiaceae0.1612.5e-121.07e-11
genusParvimonas0.1612.88e-121.22e-11
speciesParvimonas_unclassified0.1612.89e-121.22e-11
speciesAnaerotruncus_colihominis0.163.7e-121.55e-11
speciesBifidobacterium_adolescentis0.163.93e-121.63e-11
speciesClostridium_bartlettii0.1595.04e-122.07e-11
genusClostridium0.1586.25e-122.54e-11
familyRikenellaceae-0.1578.99e-123.6e-11
genusAlistipes-0.1578.99e-123.6e-11
speciesClostridium_bolteae0.1532.67e-111.06e-10
familyLactobacillaceae0.1532.71e-111.07e-10
speciesHoldemania_filiformis0.1523.72e-111.45e-10
genusPropionibacterium0.1524.46e-111.73e-10
classBetaproteobacteria-0.1514.72e-111.81e-10
speciesHaemophilus_parainfluenzae-0.156.98e-112.66e-10
genusHaemophilus-0.1498.27e-113.12e-10
genusRothia0.1499.25e-113.47e-10
familyMicrococcaceae0.1491.01e-103.75e-10
orderPasteurellales-0.1481.46e-105.34e-10
familyPasteurellaceae-0.1481.46e-105.34e-10
speciesRuminococcus_bromii0.1471.51e-105.48e-10
familySutterellaceae-0.1471.54e-105.55e-10
speciesBacteroides_vulgatus-0.1471.64e-105.86e-10
genusClostridiaceae_noname0.1471.86e-106.55e-10
speciesClostridiaceae_bacterium_JC1180.1471.86e-106.55e-10
speciesClostridium_symbiosum0.1462.21e-107.73e-10
orderBurkholderiales-0.1462.54e-108.82e-10
genusLactobacillus0.1444.17e-101.44e-09
speciesErysipelotrichaceae_bacterium_3_1_530.1444.46e-101.53e-09
speciesLactobacillus_rhamnosus0.1426.37e-102.16e-09
speciesBifidobacterium_bifidum0.1426.95e-102.34e-09
speciesBacteroides_xylanisolvens-0.1427.27e-102.43e-09
familyPropionibacteriaceae0.141.35e-094.49e-09
speciesEubacterium_rectale0.1372.4e-097.92e-09
speciesParabacteroides_merdae-0.1354.64e-091.52e-08
familyLeuconostocaceae0.1355.16e-091.68e-08
speciesPropionibacterium_freudenreichii0.1345.85e-091.89e-08
familyEnterococcaceae0.1338.47e-092.71e-08
genusEnterococcus0.1338.51e-092.71e-08
speciesGemella_morbillorum0.1311.28e-084.05e-08
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.131.55e-084.88e-08
speciesHoldemania_unclassified0.131.65e-085.16e-08
speciesEubacterium_sp_3_1_310.131.68e-085.22e-08
speciesDorea_unclassified-0.1291.93e-085.95e-08
speciesEggerthella_sp_1_3_56FAA0.1292.03e-086.22e-08
speciesEubacterium_ventriosum0.1292.05e-086.24e-08
speciesEubacterium_limosum0.1292.38e-087.2e-08
genusSiphoviridae_noname0.1273.67e-081.1e-07
speciesRothia_mucilaginosa0.1264.99e-081.49e-07
speciesClostridium_citroniae0.1256.1e-081.81e-07
speciesRuminococcus_sp_JC3040.1247.19e-082.12e-07
speciesAlistipes_putredinis-0.1239.19e-082.69e-07
phylumViruses_noname0.1221.23e-073.56e-07
classViruses_noname0.1221.23e-073.56e-07
familyPrevotellaceae-0.1221.32e-073.8e-07
speciesPeptostreptococcus_anaerobius0.1192.43e-076.95e-07
speciesAlistipes_finegoldii-0.1183.39e-079.64e-07
genusPrevotella-0.1174.27e-071.21e-06
speciesPeptostreptococcaceae_noname_unclassified0.1164.59e-071.29e-06
speciesLactobacillus_plantarum0.1165.26e-071.47e-06
speciesPeptostreptococcus_stomatis0.1155.89e-071.64e-06
speciesClostridium_asparagiforme0.1156.64e-071.83e-06
speciesLachnospiraceae_bacterium_3_1_46FAA0.1138.86e-072.43e-06
speciesLactobacillus_gasseri0.1139.11e-072.49e-06
orderCaudovirales0.1139.3e-072.52e-06
familySiphoviridae0.1139.47e-072.55e-06
speciesClostridiales_bacterium_1_7_47FAA0.1131.06e-062.84e-06
speciesBacteroides_ovatus-0.1111.43e-063.81e-06
speciesPrevotella_buccae-0.1111.5e-063.98e-06
genusCoriobacteriaceae_noname0.111.93e-065.09e-06
genusPeptoniphilus0.112.03e-065.32e-06
speciesBacteroides_stercoris-0.112.04e-065.32e-06
speciesCoriobacteriaceae_bacterium_phI0.1082.94e-067.62e-06
speciesBifidobacterium_catenulatum0.1083.05e-067.87e-06
speciesPrevotella_stercorea-0.1073.4e-068.72e-06
speciesEnterococcus_faecium0.1063.99e-061.02e-05
speciesBacteroides_uniformis-0.1064.04e-061.03e-05
speciesBifidobacterium_pseudocatenulatum0.1054.87e-061.23e-05
genusFlavonifractor0.1055.66e-061.41e-05
speciesFlavonifractor_plautii0.1055.66e-061.41e-05
speciesPrevotella_copri-0.1046.95e-061.73e-05
genusOlsenella0.1021.08e-052.67e-05
speciesEubacterium_cylindroides0.0972.64e-056.49e-05
speciesOdoribacter_unclassified0.0953.82e-059.34e-05
speciesBifidobacterium_dentium0.0953.87e-059.42e-05
speciesEnterococcus_faecalis0.0935.53e-050.000134
speciesClostridium_spiroforme0.0926.9e-050.000166
genusSubdoligranulum0.099.11e-050.000218
speciesLactococcus_phage_P6800.099.33e-050.000222
speciesClostridium_hathewayi0.099.95e-050.000236
genusClostridiales_noname0.090.0001040.000245
genusSutterellaceae_unclassified-0.0890.0001080.000254
speciesBacteroides_caccae-0.0880.0001360.000318
speciesEubacterium_eligens-0.0870.0001570.000365
orderViruses_noname0.0870.0001790.000414
speciesSubdoligranulum_unclassified0.0860.0002110.000486
genusMegasphaera-0.0850.000220.000504
speciesOlsenella_unclassified0.0850.0002490.000568
genusParasutterella-0.0830.0003330.000752
speciesParasutterella_excrementihominis-0.0830.0003330.000752
speciesDialister_invisus0.0830.0003510.000789
speciesBacteroides_nordii-0.0820.0003810.000852
genusTuricibacter0.0810.0004290.000955
speciesKlebsiella_pneumoniae-0.0810.0004540.00101
genusC2likevirus0.0810.0004770.00105
speciesLachnospiraceae_bacterium_7_1_58FAA0.0810.0004770.00105
speciesC2likevirus_unclassified0.080.0004960.00108
speciesBacteroides_intestinalis-0.080.000540.00117
speciesBacteroides_plebeius-0.080.0005650.00122
speciesTuricibacter_unclassified0.0790.0006220.00134
familyClostridiales_noname0.0780.0007240.00155
speciesAcidaminococcus_unclassified0.0780.0007960.0017
speciesClostridium_sp_KLE_17550.0770.0008280.00176
speciesAlistipes_senegalensis-0.0770.0008850.00187
genusDialister0.0760.0009560.00201
speciesPorphyromonas_asaccharolytica0.0750.001250.00262
genusBurkholderiales_noname-0.0740.001320.00274
speciesBurkholderiales_bacterium_1_1_47-0.0740.001320.00274
speciesCollinsella_intestinalis0.0730.001480.00306
familyBurkholderiales_noname-0.0730.001670.00344
speciesTuricibacter_sanguinis0.0720.001730.00355
speciesAlistipes_unclassified0.0710.002240.00458
familyStaphylococcaceae0.070.002360.0048
speciesBacteroides_cellulosilyticus-0.070.002430.00492
speciesMegamonas_funiformis-0.0690.002830.00571
speciesMegasphaera_elsdenii-0.0690.002890.0058
speciesParaprevotella_xylaniphila-0.0670.003610.00722
speciesMegasphaera_unclassified-0.0660.004170.0083
speciesPrevotella_bivia0.0660.004210.00835
genusButyricicoccus0.0650.004940.00972
speciesButyricicoccus_pullicaecorum0.0650.004940.00972
orderPseudomonadales0.0650.004980.00975
speciesSlackia_piriformis0.0650.005130.01
speciesHoldemania_sp_AP20.0640.005610.0109
genusPorphyromonas0.0640.005970.0115
familyBacteroidales_noname-0.0630.006110.0117
genusBacteroidales_noname-0.0630.006110.0117
speciesBacteroidales_bacterium_ph8-0.0630.006110.0117
genusKlebsiella-0.0630.006610.0126
speciesAnaerostipes_unclassified0.0630.006830.0129
speciesCoprobacillus_sp_29_10.0620.007090.0134
speciesLactococcus_phage_bIL670.0620.007580.0143
speciesRuminococcus_lactaris0.0610.0080.015
speciesBacteroides_coprophilus-0.0610.008560.016
genusSlackia0.060.009320.0173
genusStaphylococcus0.060.00960.0178
speciesCoprobacillus_sp_D60.0590.01040.0191
speciesVeillonella_dispar-0.0590.01040.0191
speciesStreptococcus_phage_Sfi210.0590.01070.0196
speciesOdoribacter_laneus0.0590.01120.0204
speciesDesulfovibrio_piger-0.0590.01130.0205
speciesVeillonella_atypica-0.0580.01250.0226
phylumProteobacteria-0.0570.0140.0252
speciesFusobacterium_mortiferum-0.0570.01430.0257
speciesLactobacillus_ruminis-0.0560.01530.0274
speciesRoseburia_intestinalis0.0560.01630.029
speciesParabacteroides_distasonis-0.0550.01780.0316
speciesLactobacillus_acidophilus0.0540.01890.0334
speciesWeissella_cibaria0.0540.02010.0354
speciesAcidaminococcus_fermentans-0.0520.02380.0418
speciesVeillonella_unclassified-0.0520.02560.0448
speciesStreptococcus_lutetiensis0.0510.02630.0456
speciesBacteroides_fragilis-0.0510.02630.0456
genusTunalikevirus-0.050.02920.0503
speciesLachnospiraceae_bacterium_2_1_46FAA0.050.02920.0503
speciesLactococcus_garvieae0.050.0320.0549
speciesParabacteroides_sp_D13-0.0490.03540.0605
speciesEnterobacter_cloacae-0.0490.03570.0608
speciesFusobacterium_ulcerans-0.0480.03910.0663
speciesMegamonas_hypermegale-0.0480.03920.0663
speciesLactobacillus_amylovorus0.0470.0410.0691
phylumEuryarchaeota0.0470.04250.0714
speciesEscherichia_unclassified0.0460.04830.0808
speciesMegasphaera_micronuciformis-0.0450.04990.0832
genusAcidaminococcus0.0450.05390.0881
phylumVerrucomicrobia0.0450.05410.0881
classVerrucomicrobiae0.0450.05410.0881
orderVerrucomicrobiales0.0450.05410.0881
familyVerrucomicrobiaceae0.0450.05410.0881
genusAkkermansia0.0450.05410.0881
speciesAkkermansia_muciniphila0.0450.05410.0881
speciesAlistipes_sp_HGB5-0.0440.05820.0942
speciesParabacteroides_sp_20_30.0440.05830.0942
speciesLactobacillus_oris0.0440.05930.0952
speciesClostridium_nexile0.0440.05930.0952
genusBarnesiella-0.0430.06360.101
speciesBarnesiella_intestinihominis-0.0430.06360.101
speciesParaprevotella_clara-0.0430.06380.101
speciesBacteroides_salyersiae-0.0430.06450.102
speciesOscillibacter_sp_KLE_1728-0.0420.06640.105
speciesKlebsiella_phage_KP36-0.0420.06650.105
genusEnterobacter-0.0420.06750.105
genusDesulfovibrio-0.0420.06750.105
speciesBacteroides_dorei-0.0410.07510.117
speciesParaprevotella_unclassified-0.040.08230.128
speciesCampylobacter_concisus-0.040.08340.129
speciesProteus_mirabilis0.040.08550.132
genusParaprevotella-0.0390.0920.141
speciesMegamonas_rupellensis-0.0380.09840.151
speciesParabacteroides_goldsteinii-0.0380.09920.152
speciesEscherichia_coli0.0380.1030.157
genusEscherichia0.0380.1040.157
speciesCollinsella_tanakaei0.0380.1040.157
classMethanobacteria0.0380.1050.157
orderMethanobacteriales0.0380.1050.157
familyMethanobacteriaceae0.0380.1050.157
speciesParabacteroides_unclassified-0.0370.1090.163
genusMorganella0.0370.110.163
speciesMorganella_morganii0.0370.110.163
speciesLactobacillus_vaginalis0.0370.1140.169
genusMethanosphaera0.0360.1150.169
speciesMethanosphaera_stadtmanae0.0360.1150.169
genusButyricimonas-0.0360.1160.169
speciesButyricimonas_synergistica-0.0360.1160.169
speciesEubacterium_biforme0.0360.1160.169
genusAnaerotruncus0.0360.1170.17
speciesCoprococcus_eutactus-0.0360.1240.18
speciesLeuconostoc_lactis0.0350.1270.183
genusMethanobrevibacter0.0350.1310.189
genusOxalobacter-0.0340.1380.197
speciesLactococcus_phage_jm20.0340.1380.197
speciesOxalobacter_formigenes-0.0340.1380.197
genusWeissella0.0340.140.198
speciesParabacteroides_johnsonii0.0340.140.198
speciesAlistipes_onderdonkii-0.0340.140.198
speciesMitsuokella_multacida-0.0340.1420.199
speciesBacteroides_finegoldii-0.0340.1420.199
familyAcidaminococcaceae0.0340.1430.2
genusRuminococcaceae_noname0.0340.1450.202
speciesRuminococcaceae_bacterium_D160.0340.1450.202
genusPseudoflavonifractor0.0340.1470.203
speciesPseudoflavonifractor_capillosus0.0340.1470.203
speciesMegamonas_unclassified-0.0330.150.207
genusMegamonas-0.0330.1530.211
speciesBacteroides_oleiciplenus-0.0330.1580.217
genusVeillonella-0.0320.1620.222
speciesRuminococcus_champanellensis-0.0320.1640.223
speciesLactobacillus_sanfranciscensis0.0320.1650.223
speciesLactobacillus_fermentum0.0320.1650.223
speciesMethanobrevibacter_smithii0.0320.1650.223
speciesLactobacillus_crispatus0.0320.1660.224
speciesOscillibacter_sp_KLE_17450.0320.1710.23
speciesBacteroides_salanitronis-0.0310.180.241
speciesCoprococcus_sp_ART55_1-0.0310.1810.242
speciesMethanobrevibacter_unclassified0.030.190.253
speciesButyrivibrio_unclassified0.030.1990.265
speciesFusobacterium_nucleatum0.030.20.265
genusAggregatibacter-0.0290.2040.27
familyOxalobacteraceae-0.0290.2080.274
speciesButyrivibrio_crossotus-0.0290.2090.275
genusCoprobacter-0.0280.220.288
speciesCoprobacter_fastidiosus-0.0280.220.288
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0280.2260.295
speciesEnterobacteria_phage_HK5440.0280.2270.295
speciesLactobacillus_mucosae-0.0280.2330.301
speciesVeillonella_parvula-0.0280.2330.301
speciesBilophila_wadsworthia0.0270.2480.32
familyVeillonellaceae-0.0260.2540.325
classDeltaproteobacteria-0.0260.2550.325
orderDesulfovibrionales-0.0260.2550.325
familyDesulfovibrionaceae-0.0260.2550.325
speciesLactococcus_phage_936_sensu_lato0.0260.2610.332
orderAeromonadales-0.0260.2670.337
orderEnterobacteriales0.0260.2670.337
familyEnterobacteriaceae0.0260.2670.337
speciesEnterobacter_aerogenes-0.0260.270.34
speciesBacteroides_massiliensis-0.0250.2720.341
speciesBacteroides_coprocola-0.0250.2730.342
genusSuccinatimonas-0.0240.2910.362
speciesSuccinatimonas_hippei-0.0240.2910.362
speciesBifidobacterium_breve0.0240.2920.363
speciesAlistipes_sp_AP110.0240.2980.369
speciesBacteroides_pectinophilus-0.0240.2990.369
familyPodoviridae0.0240.30.37
speciesAcidaminococcus_intestini0.0230.3180.391
speciesClostridium_sp_ATCC_BAA_4420.0230.330.405
genusActinobacillus-0.0220.3370.411
speciesActinobacillus_unclassified-0.0220.3370.411
speciesKlebsiella_oxytoca0.0220.3380.411
speciesLactococcus_phage_phi70.0220.3450.419
familySuccinivibrionaceae-0.0210.3530.427
classEpsilonproteobacteria-0.0210.3560.429
orderCampylobacterales-0.0210.3560.429
genusProteus0.0210.3630.436
genusCampylobacter-0.0210.370.443
speciesRoseburia_unclassified-0.0210.3730.446
speciesLactobacillus_reuteri0.020.3830.455
speciesBacteroides_faecis-0.020.3830.455
genusPhascolarctobacterium0.0190.4110.486
speciesPhascolarctobacterium_succinatutens0.0190.4110.486
speciesBacteroides_clarus0.0180.4470.527
familyCampylobacteraceae-0.0170.4520.532
genusAcidaminococcaceae_unclassified0.0170.4540.533
speciesPorphyromonas_uenonis0.0170.4550.533
speciesCitrobacter_unclassified-0.0170.4570.534
genusCatenibacterium0.0170.4640.539
speciesCatenibacterium_mitsuokai0.0170.4640.539
genusButyrivibrio-0.0160.4760.552
familyOscillospiraceae-0.0160.4780.552
genusOscillibacter-0.0160.4780.552
genusSutterella-0.0160.4830.556
phylumFusobacteria-0.0160.4920.562
classFusobacteriia-0.0160.4920.562
orderFusobacteriales-0.0160.4920.562
speciesSutterella_wadsworthensis-0.0150.5190.592
speciesLactobacillus_salivarius-0.0140.5550.631
speciesDesulfovibrio_desulfuricans-0.0130.5650.641
speciesHaemophilus_paraphrohaemolyticus-0.0130.5770.653
speciesBacteroides_sp_1_1_6-0.0130.5790.654
speciesBifidobacterium_angulatum-0.0130.5820.656
genusFusobacterium-0.0130.5840.656
speciesKlebsiella_unclassified-0.0120.5960.668
genusMyoviridae_noname-0.0120.6010.672
speciesAlistipes_indistinctus-0.0120.6140.684
speciesOscillibacter_unclassified-0.0120.6140.684
familyFusobacteriaceae-0.0120.6170.685
genusMitsuokella0.0110.6290.697
speciesBacteroides_fluxus0.0110.6440.709
speciesAggregatibacter_segnis-0.0110.6470.709
speciesKlebsiella_sp_MS_92_30.0110.6470.709
classNegativicutes-0.0110.6490.709
orderSelenomonadales-0.0110.6490.709
speciesDialister_succinatiphilus0.0110.6490.709
speciesMitsuokella_unclassified0.010.6550.714
speciesAnaerotruncus_unclassified-0.010.6580.716
speciesBacteroides_sp_4_3_47FAA-0.0090.6850.743
speciesStreptococcus_infantarius0.0090.7030.761
speciesCitrobacter_freundii-0.0080.7170.774
genusPantoea0.0080.7220.776
speciesPantoea_unclassified0.0080.7220.776
genusRoseburia0.0080.7390.791
speciesBilophila_unclassified-0.0080.7390.791
familyMyoviridae0.0080.7410.791
genusCitrobacter-0.0080.7450.794
genusPyramidobacter-0.0070.7570.803
speciesPyramidobacter_piscolens-0.0070.7570.803
speciesCollinsella_unclassified0.0060.7810.826
familyViruses_noname-0.0060.7840.826
genusViruses_noname-0.0060.7840.826
speciesClostridium_sp_L2_50-0.0050.8330.876
speciesHaemophilus_sputorum-0.0040.8520.894
speciesClostridium_perfringens0.0040.8550.895
genusBilophila-0.0040.8780.917
speciesStreptococcus_pasteurianus-0.0030.8890.926
genusLambdalikevirus-0.0030.8940.929
speciesBacteroides_sp_2_1_220.0030.910.944
speciesBacteroides_sp_3_1_19-0.0020.9250.957
genusFaecalibacterium-0.0020.9360.963
speciesFaecalibacterium_prausnitzii-0.0020.9360.963
classGammaproteobacteria-0.0020.9390.963
speciesRoseburia_hominis0.0020.9390.963
speciesBacteroides_barnesiae-0.0020.9460.969
speciesBacteroides_eggerthii0.0010.9560.977
speciesEubacterium_siraeum0.0010.9610.98
speciesSutterella_parvirubra-0.0010.9780.992
speciesFusobacterium_varium0.00.9870.992
speciesRoseburia_inulinivorans0.00.9870.992
phylumSynergistetes0.00.9880.992
classSynergistia0.00.9880.992
orderSynergistales0.00.9880.992
familySynergistaceae0.00.9880.992
speciesRuminococcus_callidus0.00.9920.993
speciesWeissella_confusa0.00.9930.993
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.01469126752690.00323501269640.00035516677231929949.95511
Liver cirrhosisChina1201140.001042542344230.001085266205960.01741413426671195940.1727
ObesityDenmark1691230.0009021855325190.0007140544901510.033443868436402413.2321
Rheumatoid arthritisChina127980.001790659824190.001887150938850.135605260687676622.5631
Type II diabetesChina1831850.001816629370440.001432775372080.138486213261120737.0369
Ulcerative colitisSpain78660.003630297251060.00323501269640.181331802292997532.9056
Type II diabetesDenmark752770.001069873064160.0008280787880790.2292026677751381945.2978
Type II diabetesSweden53920.003220214692440.002843646699580.3953100903491286043.5489
Colorectal cancerAustria64350.00587799001260.003862578278960.8691929893962644889.4844
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382