MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-13 21:10:55 PST
Job id & description: 1651, cutD1
Query type: protein
Count queries & homologs: 62, 18
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
CutD%fig|1232440.3.peg.3984|VBICloBac312542_3984|2565909CompleteK04069COG1180unknownunknown100.0100.0100.0
CutD%fig|1118055.3.peg.1295|VBIAnaSp223856_1295|2529324CompleteK04069COG1180FirmicutesAnaerococcus100.0100.099.38
CutD%fig|1232444.3.peg.2414|VBICloBac307725_2414|2571933CompleteK04069COG1180unknownunknown100.0100.099.05
CutD%fig|1280689.3.peg.1983|VBICloPar272395_1983|2572087CompleteK04069COG1180Firmicutesunknown100.0100.0100.0
CutD%fig|1499681.3.peg.1501|2598517CompleteK04069COG1180unknownunknown100.0100.098.73
CutD%fig|1280695.3.peg.869|VBICloClo271786_0869|2527762CompleteK04069COG1180unknownunknown100.096.5699.68
CutD%fig|1650663.3.peg.2229|2685710CompleteK04069COG1180unknownunknown100.0100.099.68
CutD%fig|1232460.3.peg.6069|VBICloBac303911_6069|2492006CompleteK04069COG1180Firmicutesunknown100.0100.095.05
CutD%fig|1476999.3.peg.1083|HMPREF1868_01113|2615462CompleteK04069COG1180Actinobacteriaunknown100.0100.090.13
CutD%fig|1476999.3.peg.1083|HMPREF1868_01113|2505131CompleteK04069COG1180Actinobacteriaunknown100.097.5289.17
CutD%fig|1416915.5.peg.3396|U876_16450|2591843CompleteK04069COG1180ProteobacteriaKlebsiella96.04100.092.06
CutD%fig|1232440.3.peg.3984|VBICloBac312542_3984|2542342CompleteK04069COG1180unknownunknown100.099.3794.95
CutD%fig|1141661.3.peg.2269|OO9_11346|VBIProAlc2395702584825CompleteK04069COG1180ProteobacteriaProvidencia99.68100.090.51
CutD%fig|1416915.5.peg.3396|U876_16450|2445295CompleteK04069COG1180ProteobacteriaKlebsiella95.4396.0189.14
CutD%fig|1416915.5.peg.3396|U876_16450|2593677CompleteK04069COG1180ProteobacteriaEscherichia95.4399.3788.5
CutD%fig|1141661.3.peg.2269|OO9_11346|VBIProAlc2395702583319CompleteK04069COG1180ProteobacteriaProteus99.68100.085.13
CutD%fig|1650663.3.peg.2229|2693370CompleteK04069COG1180unknownunknown100.0100.089.0
CutD%fig|1002368.3.peg.4240|HMPREF0880_04647|VBIYokReg1893403283766Lack 3'-endK04069COG1180ProteobacteriaKlebsiella82.2295.2284.56
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesClostridium_bolteae0.5434.06e-1441.92e-141
speciesClostridium_hathewayi0.4981.36e-1173.21e-115
speciesClostridiales_bacterium_1_7_47FAA0.4779.51e-1071.5e-104
speciesClostridium_symbiosum0.4553.15e-963.72e-94
speciesRuminococcus_gnavus0.4411.15e-891.09e-87
genusCoprobacillus0.437.19e-855.66e-83
familyClostridiaceae0.4221.24e-818.36e-80
speciesClostridium_citroniae0.4212.6e-811.53e-79
genusClostridium0.427.54e-813.95e-79
orderEnterobacteriales0.421.04e-804.46e-79
familyEnterobacteriaceae0.421.04e-804.46e-79
speciesCoprobacillus_unclassified0.4036.45e-742.54e-72
speciesClostridium_clostridioforme0.3912.11e-697.66e-68
speciesClostridium_ramosum0.3818.77e-662.96e-64
genusClostridiales_noname0.3811.29e-654.06e-64
classGammaproteobacteria0.383.02e-658.91e-64
genusEscherichia0.3773.7e-641.03e-62
speciesEscherichia_coli0.3686.01e-611.58e-59
genusFlavonifractor0.3581.72e-574.06e-56
speciesFlavonifractor_plautii0.3581.72e-574.06e-56
speciesClostridium_asparagiforme0.3529.54e-562.14e-54
genusEggerthella0.3512.17e-554.66e-54
speciesEggerthella_unclassified0.3481.81e-543.71e-53
genusKlebsiella0.3377.43e-511.46e-49
phylumProteobacteria0.3344.51e-508.51e-49
familyClostridiales_noname0.3322.23e-494.05e-48
speciesKlebsiella_pneumoniae0.326.88e-461.2e-44
familyFusobacteriaceae0.3191.47e-452.48e-44
phylumFusobacteria0.3182.92e-454.45e-44
classFusobacteriia0.3182.92e-454.45e-44
orderFusobacteriales0.3182.92e-454.45e-44
genusFusobacterium0.3161.27e-441.87e-43
speciesClostridium_nexile0.3144.15e-445.94e-43
speciesAnaerostipes_unclassified0.2916.52e-389.05e-37
speciesLachnospiraceae_bacterium_9_1_43BFAA0.291.4e-371.89e-36
speciesLachnospiraceae_bacterium_6_1_63FAA0.2852.39e-363.13e-35
speciesLachnospiraceae_bacterium_1_4_56FAA0.2821.24e-351.58e-34
speciesEubacterium_siraeum-0.2751.1e-331.37e-32
speciesEubacterium_rectale-0.2723.51e-334.25e-32
speciesLachnospiraceae_bacterium_5_1_57FAA0.2692.47e-322.91e-31
genusCoprococcus-0.2683.81e-324.39e-31
speciesSubdoligranulum_unclassified-0.2678.54e-329.6e-31
genusEnterobacter0.2612.19e-302.4e-29
genusSubdoligranulum-0.2562.41e-292.59e-28
familyRuminococcaceae-0.2553.02e-293.17e-28
speciesEnterobacter_cloacae0.2522.07e-282.12e-27
speciesBlautia_producta0.2513.49e-283.5e-27
speciesFusobacterium_ulcerans0.2491.02e-271e-26
genusButyrivibrio-0.2431.77e-261.7e-25
familyBacteroidales_noname-0.2399.26e-268.41e-25
genusBacteroidales_noname-0.2399.26e-268.41e-25
speciesBacteroidales_bacterium_ph8-0.2399.26e-268.41e-25
genusPantoea0.2381.59e-251.39e-24
speciesPantoea_unclassified0.2381.59e-251.39e-24
speciesKlebsiella_oxytoca0.2372.18e-251.87e-24
speciesCoprococcus_catus-0.2372.64e-252.23e-24
speciesRoseburia_hominis-0.2372.97e-252.46e-24
speciesRuminococcus_lactaris-0.2363.92e-253.19e-24
familyEubacteriaceae-0.2364.79e-253.83e-24
genusEubacterium-0.2365.08e-254e-24
genusFaecalibacterium-0.2314.07e-243.1e-23
speciesFaecalibacterium_prausnitzii-0.2314.07e-243.1e-23
speciesEscherichia_unclassified0.2291.29e-239.66e-23
speciesCoprococcus_sp_ART55_1-0.2264.66e-233.44e-22
speciesLachnospiraceae_bacterium_2_1_58FAA0.2231.63e-221.18e-21
speciesAlistipes_senegalensis-0.2181.24e-218.87e-21
genusBarnesiella-0.2181.63e-211.13e-20
speciesBarnesiella_intestinihominis-0.2181.63e-211.13e-20
speciesEubacterium_eligens-0.2172.05e-211.4e-20
genusBlautia0.2163.63e-212.45e-20
speciesEggerthella_lenta0.2155.87e-213.9e-20
speciesAnaerotruncus_unclassified-0.2088.32e-205.45e-19
speciesAlistipes_shahii-0.2089.52e-206.16e-19
speciesAnaerotruncus_colihominis0.2089.82e-206.26e-19
classClostridia-0.2081.01e-196.27e-19
orderClostridiales-0.2081.01e-196.27e-19
speciesEubacterium_ramulus-0.2062.65e-191.62e-18
speciesCoprococcus_comes-0.2044.34e-192.63e-18
speciesFusobacterium_varium0.2011.71e-181.02e-17
speciesAlistipes_putredinis-0.22.07e-181.22e-17
speciesErysipelotrichaceae_bacterium_2_2_44A0.1986.37e-183.71e-17
speciesDorea_longicatena-0.1933.87e-172.23e-16
speciesBifidobacterium_adolescentis-0.1934.48e-172.55e-16
speciesCitrobacter_freundii0.1917.78e-174.37e-16
genusCitrobacter0.1891.77e-169.83e-16
speciesMegasphaera_micronuciformis0.1892.01e-161.1e-15
speciesEubacterium_dolichum0.1865.17e-162.8e-15
genusOdoribacter-0.1856.19e-163.32e-15
genusClostridiaceae_noname0.1831.81e-159.49e-15
speciesClostridiaceae_bacterium_JC1180.1831.81e-159.49e-15
speciesCitrobacter_unclassified0.184.18e-152.17e-14
speciesFusobacterium_nucleatum0.185.25e-152.69e-14
phylumVerrucomicrobia-0.1796.27e-153.02e-14
classVerrucomicrobiae-0.1796.27e-153.02e-14
orderVerrucomicrobiales-0.1796.27e-153.02e-14
familyVerrucomicrobiaceae-0.1796.27e-153.02e-14
genusAkkermansia-0.1796.27e-153.02e-14
speciesAkkermansia_muciniphila-0.1796.27e-153.02e-14
speciesEubacterium_ventriosum-0.1787.81e-153.72e-14
genusMitsuokella-0.1771.3e-146.08e-14
speciesMitsuokella_unclassified-0.1771.3e-146.08e-14
speciesOdoribacter_splanchnicus-0.1743.79e-141.73e-13
familyRikenellaceae-0.1743.82e-141.73e-13
genusAlistipes-0.1743.82e-141.73e-13
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1718.52e-143.83e-13
speciesAlistipes_finegoldii-0.1719.55e-144.25e-13
genusCoprobacter-0.171.27e-135.55e-13
speciesCoprobacter_fastidiosus-0.171.27e-135.55e-13
speciesButyrivibrio_crossotus-0.1691.96e-138.49e-13
familyBacteroidaceae0.1682.52e-131.07e-12
genusBacteroides0.1682.52e-131.07e-12
speciesBacteroides_fragilis0.1682.88e-131.21e-12
phylumFirmicutes-0.1665.67e-132.37e-12
speciesKlebsiella_unclassified0.1657.11e-132.94e-12
genusPeptostreptococcus0.1657.7e-133.16e-12
genusMegasphaera0.1621.81e-127.36e-12
genusSolobacterium0.1594.54e-121.82e-11
speciesSolobacterium_moorei0.1594.54e-121.82e-11
speciesEnterobacter_aerogenes0.1594.66e-121.85e-11
speciesPeptostreptococcus_stomatis0.1586.7e-122.64e-11
familyBacillales_noname0.1561.04e-114.02e-11
genusGemella0.1561.04e-114.02e-11
speciesRuminococcus_callidus-0.1533.26e-111.25e-10
familyClostridiales_Family_XI_Incertae_Sedis0.1523.53e-111.34e-10
speciesLactobacillus_salivarius0.1524.09e-111.54e-10
genusMorganella0.1516.1e-112.27e-10
speciesMorganella_morganii0.1516.1e-112.27e-10
speciesLachnospiraceae_bacterium_2_1_46FAA0.157.19e-112.65e-10
speciesStreptococcus_anginosus0.1481.14e-104.17e-10
speciesCoprococcus_eutactus-0.1481.21e-104.39e-10
speciesCollinsella_aerofaciens-0.1481.28e-104.61e-10
speciesButyrivibrio_unclassified-0.1481.36e-104.86e-10
speciesBacteroides_thetaiotaomicron0.1453.24e-101.15e-09
classErysipelotrichia0.1453.33e-101.16e-09
orderErysipelotrichales0.1453.33e-101.16e-09
familyErysipelotrichaceae0.1453.33e-101.16e-09
speciesSutterella_wadsworthensis-0.1444.37e-101.51e-09
speciesMethanobrevibacter_smithii-0.1426.38e-102.18e-09
genusWeissella0.1418.59e-102.92e-09
speciesFusobacterium_mortiferum0.1391.47e-094.96e-09
speciesErysipelotrichaceae_bacterium_3_1_530.1382.35e-097.87e-09
genusMethanobrevibacter-0.1372.44e-098.11e-09
genusPseudoflavonifractor-0.1363.17e-091.04e-08
speciesPseudoflavonifractor_capillosus-0.1363.17e-091.04e-08
classMethanobacteria-0.1363.28e-091.05e-08
orderMethanobacteriales-0.1363.28e-091.05e-08
familyMethanobacteriaceae-0.1363.28e-091.05e-08
speciesClostridium_sp_L2_50-0.1363.33e-091.06e-08
speciesEubacterium_limosum0.1363.35e-091.06e-08
speciesRoseburia_intestinalis-0.1363.41e-091.07e-08
genusDorea-0.1345.6e-091.75e-08
genusSutterella-0.1345.83e-091.81e-08
genusEnterococcus0.1346.66e-092.05e-08
speciesStreptococcus_pasteurianus0.1346.74e-092.07e-08
speciesEubacterium_biforme-0.1337.33e-092.23e-08
speciesClostridium_sp_ATCC_BAA_4420.1321.07e-083.24e-08
familyEnterococcaceae0.1321.09e-083.28e-08
orderBacillales0.1311.36e-084.06e-08
speciesLactobacillus_oris0.1311.41e-084.19e-08
genusAdlercreutzia-0.131.52e-084.46e-08
speciesAdlercreutzia_equolifaciens-0.131.52e-084.46e-08
genusPeptoniphilus0.131.85e-085.39e-08
speciesRuminococcus_champanellensis-0.1282.69e-087.79e-08
phylumEuryarchaeota-0.1282.79e-088.03e-08
genusProteus0.1282.96e-088.47e-08
orderLactobacillales0.1283.07e-088.73e-08
classBacilli0.1273.92e-081.11e-07
speciesKlebsiella_sp_MS_92_30.1264.56e-081.28e-07
speciesGemella_morbillorum0.1264.99e-081.39e-07
speciesPrevotella_buccae0.1255.68e-081.58e-07
speciesBacteroides_pectinophilus-0.1256.14e-081.69e-07
speciesProteus_mirabilis0.1247.89e-082.17e-07
familyActinomycetaceae0.1239.03e-082.46e-07
familyStreptococcaceae0.1231.03e-072.79e-07
speciesBacteroides_stercoris0.1231.06e-072.86e-07
genusMegamonas0.1221.08e-072.9e-07
speciesMegamonas_unclassified0.1221.11e-072.96e-07
genusStreptococcus0.1221.19e-073.16e-07
speciesClostridium_sp_KLE_17550.1211.36e-073.59e-07
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1211.63e-074.27e-07
genusActinomyces0.121.83e-074.77e-07
speciesRoseburia_inulinivorans-0.121.95e-075.06e-07
speciesBilophila_wadsworthia0.122.11e-075.44e-07
speciesWeissella_confusa0.1192.22e-075.69e-07
genusRoseburia-0.1192.74e-076.99e-07
speciesLactococcus_garvieae0.1183.3e-078.37e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1173.62e-079.14e-07
genusBilophila0.1173.93e-079.81e-07
speciesVeillonella_parvula0.1173.93e-079.81e-07
speciesBifidobacterium_dentium0.1164.51e-071.12e-06
speciesParaprevotella_unclassified-0.1164.69e-071.16e-06
genusParaprevotella-0.1165.08e-071.25e-06
genusCollinsella-0.1165.29e-071.29e-06
speciesParabacteroides_unclassified0.1155.82e-071.42e-06
speciesBilophila_unclassified0.1148.34e-072.02e-06
classDeltaproteobacteria0.1148.47e-072.02e-06
orderDesulfovibrionales0.1148.47e-072.02e-06
familyDesulfovibrionaceae0.1148.47e-072.02e-06
genusRuminococcus-0.1139.62e-072.28e-06
familyMyoviridae0.1121.14e-062.69e-06
genusOxalobacter-0.1121.2e-062.8e-06
speciesOxalobacter_formigenes-0.1121.2e-062.8e-06
familyOxalobacteraceae-0.1121.32e-063.07e-06
speciesStreptococcus_lutetiensis0.1111.36e-063.15e-06
speciesClostridium_perfringens0.1092.09e-064.81e-06
speciesEnterococcus_faecalis0.1092.11e-064.83e-06
speciesVeillonella_dispar0.1082.64e-066.02e-06
speciesParaprevotella_clara-0.1082.88e-066.54e-06
speciesAlistipes_onderdonkii-0.1083.1e-067e-06
speciesParvimonas_unclassified0.1064.19e-069.42e-06
genusParvimonas0.1064.3e-069.62e-06
speciesWeissella_cibaria0.1055.07e-061.13e-05
genusHoldemania0.1055.34e-061.18e-05
speciesParaprevotella_xylaniphila-0.1055.73e-061.26e-05
speciesAlistipes_sp_HGB5-0.1055.89e-061.29e-05
speciesRuminococcus_obeum-0.1046.13e-061.34e-05
genusVeillonella0.1037.99e-061.74e-05
speciesC2likevirus_unclassified-0.1038.5e-061.84e-05
genusC2likevirus-0.1029.12e-061.97e-05
speciesRuminococcus_bromii-0.1021.08e-052.32e-05
speciesEubacterium_sp_3_1_310.1011.15e-052.45e-05
speciesMegamonas_rupellensis0.1011.15e-052.45e-05
phylumSynergistetes0.11.42e-052.97e-05
classSynergistia0.11.42e-052.97e-05
orderSynergistales0.11.42e-052.97e-05
familySynergistaceae0.11.42e-052.97e-05
genusLachnospiraceae_noname0.11.44e-052.99e-05
speciesStreptococcus_salivarius0.0991.75e-053.62e-05
speciesAnaerostipes_hadrus-0.0991.83e-053.77e-05
familyLeuconostocaceae0.0982.26e-054.64e-05
speciesStreptococcus_mitis_oralis_pneumoniae0.0982.29e-054.68e-05
speciesLactobacillus_mucosae0.0982.38e-054.84e-05
speciesDorea_formicigenerans-0.0972.41e-054.88e-05
speciesCampylobacter_concisus0.0963.4e-056.86e-05
speciesErysipelotrichaceae_bacterium_6_1_450.0953.77e-057.57e-05
speciesVeillonella_atypica0.0953.89e-057.78e-05
speciesStreptococcus_infantarius0.0944.7e-059.36e-05
classEpsilonproteobacteria0.0944.82e-059.52e-05
orderCampylobacterales0.0944.82e-059.52e-05
speciesBifidobacterium_breve0.0926.21e-050.000122
speciesStreptococcus_australis0.0926.29e-050.000123
genusPyramidobacter0.0926.59e-050.000128
speciesPyramidobacter_piscolens0.0926.59e-050.000128
speciesAlistipes_indistinctus-0.0926.77e-050.000131
familySutterellaceae-0.0926.92e-050.000133
speciesClostridium_leptum-0.0927.12e-050.000137
speciesCoprobacillus_sp_D60.0918.66e-050.000165
genusCampylobacter0.0918.73e-050.000166
familyCampylobacteraceae0.099.01e-050.000171
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.099.16e-050.000173
speciesMegasphaera_unclassified0.090.0001020.000192
speciesEubacterium_hallii-0.0890.0001070.0002
speciesPeptostreptococcus_anaerobius0.0890.0001160.000216
speciesLactobacillus_crispatus0.0890.0001160.000216
speciesBifidobacterium_pseudocatenulatum0.0880.0001360.000252
speciesPorphyromonas_uenonis0.0880.0001430.000264
speciesLactobacillus_vaginalis0.0860.0001880.000345
speciesHoldemania_sp_AP20.0850.0002170.000397
speciesMethanobrevibacter_unclassified-0.0850.0002460.000448
orderBurkholderiales-0.0840.0002650.000481
speciesStreptococcus_vestibularis0.0840.0002940.000532
speciesClostridium_bartlettii0.0840.0002980.000537
speciesLactobacillus_fermentum0.0830.0003140.000564
speciesEnterococcus_faecium0.0830.0003340.000597
familyLachnospiraceae-0.0830.000340.000606
speciesLactobacillus_ruminis-0.0810.0004310.000765
speciesCollinsella_intestinalis0.0810.0004510.000797
genusAggregatibacter0.0810.0004810.000847
speciesSubdoligranulum_sp_4_3_54A2FAA0.080.0005120.000898
speciesCoprobacillus_sp_29_10.080.0005380.000941
familyPeptostreptococcaceae0.0790.0005820.00101
speciesAcidaminococcus_intestini0.0790.0005930.00103
speciesPrevotella_bivia0.0790.00060.00104
speciesBacteroides_oleiciplenus0.0790.0006210.00107
speciesParabacteroides_merdae-0.0790.0006490.00111
speciesAggregatibacter_segnis0.0790.0006590.00113
classBetaproteobacteria-0.0780.0007080.00121
speciesBifidobacterium_catenulatum-0.0770.0008970.00152
familySiphoviridae-0.0770.0009030.00153
genusButyricicoccus0.0770.0009190.00154
speciesButyricicoccus_pullicaecorum0.0770.0009190.00154
speciesParabacteroides_sp_D13-0.0770.0009230.00154
speciesPeptostreptococcaceae_noname_unclassified-0.0760.0009650.00161
speciesStreptococcus_gordonii0.0760.001050.00175
speciesLactobacillus_gasseri0.0750.001170.00194
familyLactobacillaceae0.0730.001580.00261
genusErysipelotrichaceae_noname0.0720.001740.00286
speciesMegamonas_hypermegale0.0720.001880.00308
speciesEnterobacteria_phage_HK5440.0720.001930.00315
speciesRuminococcus_torques0.0710.002180.00355
speciesBacteroides_massiliensis0.070.002450.00397
familyVeillonellaceae0.0690.002650.00428
genusLactobacillus0.0690.002930.0047
speciesLeuconostoc_lactis0.0690.002930.0047
speciesOdoribacter_unclassified-0.0680.003270.00523
speciesMitsuokella_multacida-0.0670.00370.0059
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0670.003820.00607
speciesStreptococcus_thermophilus-0.0670.003950.00626
speciesCollinsella_tanakaei0.0660.004530.00714
genusSiphoviridae_noname-0.0660.004540.00714
speciesBacteroides_xylanisolvens0.0660.004570.00717
genusCatenibacterium-0.0660.00460.00717
speciesCatenibacterium_mitsuokai-0.0660.00460.00717
genusLambdalikevirus0.0650.004620.00717
speciesVeillonella_unclassified0.0650.004660.00721
speciesAlistipes_sp_AP11-0.0650.005160.00796
genusAcidaminococcus0.0640.005680.0087
speciesLactococcus_phage_P680-0.0640.005680.0087
speciesBacteroides_ovatus0.0630.006090.0093
speciesBacteroides_uniformis-0.0630.006740.0103
speciesBacteroides_nordii0.0620.00690.0105
speciesStreptococcus_mutans0.0620.007030.0106
speciesTuricibacter_unclassified-0.0620.00760.0115
speciesBacteroides_sp_3_1_190.0610.007960.012
speciesLactococcus_phage_jm2-0.0610.00860.0129
speciesOlsenella_unclassified-0.060.009270.0138
classNegativicutes0.060.009570.0142
orderSelenomonadales0.060.009570.0142
genusAnaerotruncus-0.0590.01030.0152
genusTuricibacter-0.0590.01050.0155
speciesStreptococcus_sanguinis0.0590.01130.0166
speciesPrevotella_stercorea0.0580.01180.0173
familyPropionibacteriaceae-0.0580.01190.0174
orderActinomycetales0.0570.01340.0195
speciesLactobacillus_amylovorus0.0570.01430.0208
classBacteroidia0.0560.01490.0215
orderBacteroidales0.0560.01490.0215
phylumBacteroidetes0.0560.0150.0215
genusPrevotella0.0560.0150.0215
speciesLactobacillus_reuteri0.0560.01580.0226
speciesLachnospiraceae_bacterium_1_1_57FAA0.0550.01720.0245
speciesBacteroides_cellulosilyticus-0.0540.01910.0271
genusPhascolarctobacterium-0.0540.01920.0271
speciesPhascolarctobacterium_succinatutens-0.0540.01920.0271
speciesPropionibacterium_freudenreichii-0.0530.02190.0309
speciesBacteroides_coprophilus-0.0520.02530.0355
genusPeptostreptococcaceae_noname0.0510.02680.0375
genusRuminococcaceae_noname-0.050.03080.0429
speciesRuminococcaceae_bacterium_D16-0.050.03080.0429
genusParabacteroides0.050.03170.044
orderAeromonadales0.0480.03870.0536
speciesBacteroides_sp_2_1_22-0.0460.0490.0676
genusParasutterella-0.0450.05150.0707
speciesParasutterella_excrementihominis-0.0450.05150.0707
speciesParabacteroides_goldsteinii0.0450.05310.0726
genusMyoviridae_noname0.0440.0580.0791
familyPrevotellaceae-0.0440.05860.0797
speciesTuricibacter_sanguinis-0.0430.06280.0852
speciesRuminococcus_sp_5_1_39BFAA-0.0420.06690.0905
speciesPrevotella_copri0.0420.06770.0913
speciesHoldemania_filiformis0.0420.0680.0914
speciesBacteroides_sp_4_3_47FAA-0.0420.06880.0921
genusOlsenella-0.0420.06890.0921
speciesBifidobacterium_angulatum-0.0410.0740.0987
speciesDorea_unclassified0.0410.07840.104
speciesSutterella_parvirubra0.0410.07950.105
genusPropionibacterium-0.040.08120.107
speciesLactobacillus_acidophilus-0.040.08260.109
speciesAlistipes_unclassified0.040.0850.112
genusMethanosphaera-0.040.0870.114
speciesMethanosphaera_stadtmanae-0.040.0870.114
speciesDesulfovibrio_piger-0.0390.09190.12
speciesLactococcus_phage_936_sensu_lato-0.0390.09220.12
speciesLactococcus_phage_phi7-0.0380.09710.126
genusPorphyromonas0.0380.09850.127
familyPorphyromonadaceae-0.0380.1010.13
speciesEubacterium_cylindroides-0.0360.1150.148
genusAcidaminococcaceae_unclassified-0.0360.1170.15
familyViruses_noname0.0360.1230.157
genusViruses_noname0.0360.1230.157
speciesBlautia_hydrogenotrophica0.0350.130.165
genusCoriobacteriaceae_noname0.0340.1360.173
speciesOscillibacter_sp_KLE_17450.0340.1430.181
phylumViruses_noname-0.0340.1450.183
classViruses_noname-0.0340.1450.183
genusSlackia0.0340.1460.183
speciesLactobacillus_rhamnosus0.0330.150.188
genusDialister-0.0330.1510.189
speciesEggerthella_sp_1_3_56FAA0.0330.1540.192
speciesBacteroides_salyersiae0.0320.1670.207
speciesCoriobacteriaceae_bacterium_phI0.0320.1680.208
speciesLactococcus_lactis-0.0320.170.21
speciesErysipelotrichaceae_bacterium_21_30.0310.1770.218
speciesRothia_mucilaginosa0.0310.1780.219
speciesParabacteroides_sp_20_3-0.0310.1830.224
orderCaudovirales-0.030.1920.235
speciesDialister_succinatiphilus-0.030.1950.238
speciesPorphyromonas_asaccharolytica0.0290.2130.258
speciesMegamonas_funiformis0.0290.2130.258
speciesStreptococcus_parasanguinis0.0280.220.266
speciesBacteroides_intestinalis0.0280.220.266
familyMicrococcaceae0.0280.2210.266
genusTunalikevirus0.0280.2240.269
genusRothia0.0280.2280.273
speciesLactobacillus_plantarum0.0270.2430.29
genusAnaerostipes0.0270.2440.29
speciesBacteroides_barnesiae-0.0270.2440.29
speciesBifidobacterium_longum-0.0270.2480.294
familyStaphylococcaceae0.0260.2630.311
speciesBacteroides_plebeius0.0250.2730.322
familyOscillospiraceae0.0250.2750.323
genusOscillibacter0.0250.2750.323
speciesBacteroides_salanitronis-0.0240.290.34
familyAcidaminococcaceae-0.0240.2970.347
familyPodoviridae0.0240.3060.357
speciesParabacteroides_johnsonii0.0230.3160.367
genusLeuconostoc0.0230.330.383
genusSutterellaceae_unclassified0.0220.3330.385
speciesBacteroides_coprocola-0.0210.3660.421
speciesParabacteroides_distasonis0.0210.3660.421
speciesBacteroides_finegoldii0.020.3810.438
speciesLactobacillus_sanfranciscensis0.020.3930.45
speciesAcidaminococcus_fermentans0.0190.3990.456
speciesAcidaminococcus_unclassified0.0190.4040.461
speciesDialister_invisus-0.0190.4060.462
speciesKlebsiella_phage_KP360.0190.4140.47
speciesBifidobacterium_bifidum0.0190.4170.472
speciesHaemophilus_sputorum0.0180.440.497
speciesHaemophilus_paraphrohaemolyticus0.0180.4470.504
genusBifidobacterium-0.0170.4580.515
genusHaemophilus-0.0170.4670.524
genusDesulfovibrio-0.0170.470.526
speciesHaemophilus_parainfluenzae-0.0160.490.547
speciesStreptococcus_phage_Sfi210.0160.4920.548
speciesMegasphaera_elsdenii0.0160.4960.551
speciesLactococcus_phage_bIL67-0.0160.5020.556
speciesRoseburia_unclassified-0.0150.5060.559
speciesOscillibacter_sp_KLE_1728-0.0150.5110.564
genusActinobacillus0.0150.5230.574
speciesActinobacillus_unclassified0.0150.5230.574
speciesLactobacillus_delbrueckii0.0150.5250.575
speciesBacteroides_dorei-0.0140.5330.582
orderPasteurellales-0.0140.5430.591
familyPasteurellaceae-0.0140.5430.591
orderBifidobacteriales-0.0140.550.595
familyBifidobacteriaceae-0.0140.550.595
speciesBacteroides_eggerthii0.0140.5570.602
speciesBifidobacterium_animalis-0.0130.5720.616
orderPseudomonadales-0.0130.5780.621
familyBurkholderiales_noname-0.0130.580.622
phylumActinobacteria0.0120.60.641
classActinobacteria0.0120.60.641
genusBurkholderiales_noname-0.0120.6060.644
speciesBurkholderiales_bacterium_1_1_47-0.0120.6060.644
orderCoriobacteriales0.0110.6260.661
familyCoriobacteriaceae0.0110.6260.661
speciesClostridium_spiroforme-0.0110.6280.661
speciesOdoribacter_laneus-0.0110.6280.661
speciesOscillibacter_unclassified0.0110.6290.661
speciesBacteroides_sp_1_1_60.0110.6470.679
speciesRuminococcus_sp_JC3040.010.660.691
speciesBacteroides_faecis-0.010.6780.707
speciesSlackia_piriformis-0.010.6790.707
genusStaphylococcus0.0090.6840.711
speciesDesulfovibrio_desulfuricans-0.0090.7040.73
speciesCollinsella_unclassified0.0090.7110.736
speciesHoldemania_unclassified-0.0070.7750.8
orderViruses_noname-0.0060.7790.803
speciesBacteroides_fluxus-0.0060.7920.813
genusGordonibacter0.0060.7940.813
speciesGordonibacter_pamelaeae0.0060.7940.813
speciesLactobacillus_casei_paracasei0.0060.7980.815
genusLactococcus0.0050.8340.85
speciesBacteroides_caccae-0.0050.8380.85
genusSuccinatimonas0.0050.8390.85
speciesSuccinatimonas_hippei0.0050.8390.85
familySuccinivibrionaceae0.0040.8740.883
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0030.8850.893
speciesBacteroides_vulgatus-0.0030.9010.907
speciesBacteroides_clarus-0.0020.9410.945
genusButyricimonas-0.0010.9530.953
speciesButyricimonas_synergistica-0.0010.9530.953
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.009319533515110.001880933214561.58360913972e-07660.219451
Liver cirrhosisChina1201140.003201679136490.001327552942442.32053344816e-0629499.90628
Type II diabetesChina1831850.007809413613450.005172420695930.00031809060609511183.69477
Type II diabetesDenmark752770.002003148145010.001267286584670.0019770124730728859.45685
Ulcerative colitisSpain78660.002071874919110.001880933214560.0234217497919308210.1669
Colorectal cancerAustria64350.007926048213090.002567625490460.0381553316423037.79199
Type II diabetesSweden53920.002941803213310.002407405962880.213894088698757625.6553
ObesityDenmark1691230.001434215028250.00119751875340.3574088170751565751.4847
Rheumatoid arthritisChina127980.00387018110750.002687421162840.572066522911921664.0811
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382