MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-13 21:13:35 PST
Job id & description: 1652, cutd2
Query type: protein
Count queries & homologs: 90, 17
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
CutD%fig|584.199.peg.4039|A0O00_10500|2583319CompleteK04069COG1180ProteobacteriaProteus99.68100.099.37
CutD%fig|1852379.3.peg.1385|2541799CompleteK04069COG1180unknownunknown100.0100.099.06
CutD%fig|537288.4.peg.1622|AT798_04320|2543423CompleteK04069COG1180unknownunknown100.0100.095.61
CutD%fig|165185.5.peg.136|SAMEA3545284_01691|2616559CompleteK04069COG1180unknownunknown100.0100.097.77
CutD%fig|587.20.peg.3395|AAY77_14165|2584825CompleteK04069COG1180ProteobacteriaProvidencia100.099.6896.51
CutD%fig|571.236.peg.3810|2445295CompleteK04069COG1180ProteobacteriaKlebsiella100.0100.095.43
CutD%fig|571.236.peg.3810|2591843CompleteK04069COG1180ProteobacteriaKlebsiella95.4399.3795.21
CutD%fig|1951455.3.peg.588|2505131CompleteK04069COG1180Actinobacteriaunknown98.7799.3887.5
CutD%fig|571.236.peg.3810|2593677CompleteK04069COG1180ProteobacteriaEscherichia96.04100.091.43
CutD%fig|1951455.3.peg.588|2615462CompleteK04069COG1180Actinobacteriaunknown96.91100.088.22
CutD%fig|742733.3.peg.668|HMPREF9469_00638|VBICloCit1590152492006CompleteK04069COG1180Firmicutesunknown100.0100.088.85
CutD%fig|571.236.peg.3810|3283766Lack 3'-endK04069COG1180ProteobacteriaKlebsiella82.93100.0100.0
CutD%fig|1351755.6.peg.2079|CCH01_21040|2572087CompleteK04069COG1180Firmicutesunknown100.0100.085.8
CutD%fig|742733.3.peg.668|HMPREF9469_00638|VBICloCit1590152527762CompleteK04069COG1180unknownunknown95.6796.5681.23
CutD%fig|1903261.3.peg.1087|2663350CompleteK04069COG1180unknownunknown100.099.6883.17
CutD%fig|165185.5.peg.136|SAMEA3545284_01691|3551316Lack 3'-endK04069COG1180unknownunknown81.85100.089.88
CutD%fig|165185.5.peg.136|SAMEA3545284_01691|3531917Lack 5'-endK04069COG1180unknownunknown81.85100.081.32
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderEnterobacteriales0.3361.56e-503.68e-48
familyEnterobacteriaceae0.3361.56e-503.68e-48
speciesClostridiales_bacterium_1_7_47FAA0.3074.82e-427.58e-40
familyClostridiaceae0.3034.75e-415.6e-39
genusClostridium0.3021e-409.44e-39
genusBlautia0.2932.32e-381.83e-36
genusEscherichia0.2852.7e-361.82e-34
classGammaproteobacteria0.2798.78e-355.18e-33
speciesEscherichia_coli0.2741.28e-336.71e-32
speciesClostridium_bolteae0.2717.1e-333.35e-31
speciesClostridium_hathewayi0.271.3e-325.58e-31
genusCoprobacillus0.2692.05e-328.06e-31
genusClostridiales_noname0.2594.99e-301.81e-28
speciesClostridium_symbiosum0.2571.36e-294.59e-28
speciesKlebsiella_oxytoca0.2571.54e-294.85e-28
genusKlebsiella0.2554.8e-291.42e-27
genusEggerthella0.2545.89e-291.64e-27
orderCoriobacteriales0.2521.52e-283.78e-27
familyCoriobacteriaceae0.2521.52e-283.78e-27
speciesEggerthella_unclassified0.2512.82e-286.66e-27
classErysipelotrichia0.2481.55e-273.18e-26
orderErysipelotrichales0.2481.55e-273.18e-26
familyErysipelotrichaceae0.2481.55e-273.18e-26
genusEnterobacter0.2431.73e-263.4e-25
speciesEnterobacter_cloacae0.2323.35e-246.32e-23
speciesKlebsiella_pneumoniae0.236.63e-241.2e-22
orderLactobacillales0.2291e-231.75e-22
speciesCoprobacillus_unclassified0.2264.53e-237.57e-22
classBacilli0.2264.65e-237.57e-22
familyEnterococcaceae0.2264.89e-237.69e-22
speciesClostridium_ramosum0.2249.43e-231.44e-21
speciesClostridium_citroniae0.2231.97e-222.91e-21
genusEnterococcus0.2222.78e-223.98e-21
familyActinomycetaceae0.2163.91e-215.43e-20
phylumProteobacteria0.2164.2e-215.66e-20
speciesClostridium_clostridioforme0.2155.4e-217.08e-20
speciesAnaerotruncus_colihominis0.2147.06e-219.01e-20
phylumActinobacteria0.2148.16e-219.88e-20
classActinobacteria0.2148.16e-219.88e-20
speciesCitrobacter_freundii0.2121.74e-202.05e-19
familyStreptococcaceae0.2121.91e-202.2e-19
genusActinomyces0.2112.89e-203.25e-19
genusCitrobacter0.2081.14e-191.25e-18
genusSolobacterium0.2061.9e-191.99e-18
speciesSolobacterium_moorei0.2061.9e-191.99e-18
phylumBacteroidetes-0.2045.87e-195.81e-18
classBacteroidia-0.2045.91e-195.81e-18
orderBacteroidales-0.2045.91e-195.81e-18
speciesEscherichia_unclassified0.2036.95e-196.69e-18
speciesRuminococcus_torques0.2021.1e-181.04e-17
genusStreptococcus0.22.49e-182.3e-17
speciesErysipelotrichaceae_bacterium_2_2_44A0.1993.65e-183.31e-17
speciesClostridium_asparagiforme0.1976.93e-186.17e-17
speciesLachnospiraceae_bacterium_5_1_57FAA0.1977.51e-186.56e-17
speciesEggerthella_lenta0.1978.54e-187.33e-17
speciesCitrobacter_unclassified0.1961.16e-179.78e-17
familyClostridiales_noname0.1951.7e-171.41e-16
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1917.69e-176.26e-16
genusGordonibacter0.1918.76e-176.89e-16
speciesGordonibacter_pamelaeae0.1918.76e-176.89e-16
genusPantoea0.1891.44e-161.1e-15
speciesPantoea_unclassified0.1891.44e-161.1e-15
familyLeuconostocaceae0.1857.42e-165.56e-15
speciesStreptococcus_anginosus0.184.7e-153.47e-14
genusErysipelotrichaceae_noname0.184.83e-153.51e-14
speciesSubdoligranulum_sp_4_3_54A2FAA0.1789.41e-156.73e-14
speciesBlautia_producta0.1771.12e-147.89e-14
orderActinomycetales0.1761.92e-141.33e-13
speciesRuminococcus_gnavus0.1761.95e-141.33e-13
speciesRuminococcus_obeum0.1761.98e-141.34e-13
genusFaecalibacterium-0.1762.08e-141.36e-13
speciesFaecalibacterium_prausnitzii-0.1762.08e-141.36e-13
speciesEnterobacter_aerogenes0.1743.96e-142.56e-13
speciesAnaerostipes_unclassified0.1734.4e-142.81e-13
familyBacillales_noname0.1735.26e-143.27e-13
genusGemella0.1735.26e-143.27e-13
speciesErysipelotrichaceae_bacterium_6_1_450.1711.13e-136.93e-13
speciesEnterococcus_faecalis0.171.51e-139.14e-13
familySutterellaceae-0.1673.82e-132.28e-12
orderBurkholderiales-0.1664.9e-132.89e-12
familyLactobacillaceae0.1631.21e-127.05e-12
classBetaproteobacteria-0.1621.9e-121.09e-11
speciesLactococcus_garvieae0.1595.27e-123e-11
orderBacillales0.1577.78e-124.37e-11
genusFlavonifractor0.1578.96e-124.92e-11
speciesFlavonifractor_plautii0.1578.96e-124.92e-11
genusLactobacillus0.1579.54e-125.18e-11
speciesKlebsiella_unclassified0.1561.3e-116.97e-11
genusRoseburia-0.1523.88e-112.06e-10
orderBifidobacteriales0.1524.01e-112.08e-10
familyBifidobacteriaceae0.1524.01e-112.08e-10
familyPeptostreptococcaceae0.1524.06e-112.08e-10
genusLactococcus0.1524.12e-112.09e-10
speciesClostridium_bartlettii0.1515.43e-112.73e-10
speciesStreptococcus_sanguinis0.156.33e-113.15e-10
speciesEubacterium_eligens-0.157.26e-113.57e-10
speciesDorea_formicigenerans0.157.89e-113.84e-10
genusHoldemania0.1498.95e-114.31e-10
genusBifidobacterium0.1499.18e-114.38e-10
genusDorea0.1491.09e-105.14e-10
speciesEubacterium_hallii0.1481.18e-105.51e-10
speciesLachnospiraceae_bacterium_1_4_56FAA0.1462.09e-109.67e-10
familyFusobacteriaceae0.1452.72e-101.25e-09
speciesStreptococcus_australis0.1452.96e-101.34e-09
genusAnaerostipes0.1453.01e-101.35e-09
phylumFusobacteria0.1453.31e-101.45e-09
classFusobacteriia0.1453.31e-101.45e-09
orderFusobacteriales0.1453.31e-101.45e-09
speciesStreptococcus_salivarius0.1435.12e-102.22e-09
genusFusobacterium0.1435.75e-102.47e-09
speciesRuminococcus_sp_5_1_39BFAA0.1427.88e-103.35e-09
speciesEubacterium_limosum0.1411.04e-094.38e-09
speciesBifidobacterium_dentium0.141.17e-094.89e-09
speciesClostridium_nexile0.141.22e-095.05e-09
genusWeissella0.1391.43e-095.87e-09
genusMorganella0.1391.63e-096.58e-09
speciesMorganella_morganii0.1391.63e-096.58e-09
genusCollinsella0.1382.35e-099.4e-09
speciesClostridium_leptum0.1363.14e-091.25e-08
familyClostridiales_Family_XI_Incertae_Sedis0.1363.25e-091.28e-08
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1363.97e-091.55e-08
genusLeuconostoc0.1355.09e-091.97e-08
speciesRoseburia_inulinivorans-0.1355.15e-091.98e-08
speciesEnterococcus_faecium0.1345.44e-092.07e-08
genusPeptostreptococcaceae_noname0.1345.5e-092.08e-08
genusLachnospiraceae_noname0.1346.26e-092.35e-08
speciesWeissella_cibaria0.1346.55e-092.43e-08
speciesErysipelotrichaceae_bacterium_21_30.1292.28e-088.41e-08
genusPeptostreptococcus0.1292.37e-088.67e-08
speciesStreptococcus_gordonii0.1282.69e-089.77e-08
speciesFusobacterium_ulcerans0.1255.55e-082e-07
speciesLachnospiraceae_bacterium_6_1_63FAA0.1239.43e-083.37e-07
speciesFusobacterium_nucleatum0.1239.56e-083.39e-07
speciesCollinsella_aerofaciens0.1221.09e-073.84e-07
speciesBacteroides_vulgatus-0.1221.12e-073.92e-07
speciesLactobacillus_oris0.1211.67e-075.8e-07
speciesBifidobacterium_longum0.121.91e-076.58e-07
speciesStreptococcus_mitis_oralis_pneumoniae0.1192.33e-077.97e-07
genusAdlercreutzia0.1192.55e-078.6e-07
speciesAdlercreutzia_equolifaciens0.1192.55e-078.6e-07
speciesRoseburia_intestinalis-0.1192.64e-078.84e-07
speciesHaemophilus_parainfluenzae-0.1173.48e-071.16e-06
genusHaemophilus-0.1173.75e-071.24e-06
speciesWeissella_confusa0.1173.94e-071.29e-06
speciesKlebsiella_sp_MS_92_30.1164.84e-071.58e-06
orderPasteurellales-0.1155.76e-071.85e-06
familyPasteurellaceae-0.1155.76e-071.85e-06
speciesLactococcus_lactis0.1156.3e-072.01e-06
genusPeptoniphilus0.1147.28e-072.31e-06
speciesLactobacillus_casei_paracasei0.1147.45e-072.34e-06
genusProteus0.1131.04e-063.23e-06
genusRuminococcus0.1131.04e-063.23e-06
speciesCoprobacillus_sp_29_10.1121.12e-063.46e-06
speciesStreptococcus_vestibularis0.1111.67e-065.12e-06
speciesStreptococcus_thermophilus0.111.68e-065.12e-06
speciesCoprobacillus_sp_D60.111.87e-065.66e-06
classDeltaproteobacteria0.111.98e-065.88e-06
orderDesulfovibrionales0.111.98e-065.88e-06
familyDesulfovibrionaceae0.111.98e-065.88e-06
genusParvimonas0.112.01e-065.93e-06
speciesParvimonas_unclassified0.112.04e-065.98e-06
speciesEubacterium_rectale-0.1082.66e-067.75e-06
speciesStreptococcus_mutans0.1082.77e-068.02e-06
speciesLactobacillus_delbrueckii0.1073.59e-061.03e-05
speciesLactobacillus_salivarius0.1064.06e-061.16e-05
genusOlsenella0.1055.64e-061.6e-05
speciesPorphyromonas_asaccharolytica0.1055.71e-061.61e-05
familyBacteroidaceae-0.1046.49e-061.81e-05
genusBacteroides-0.1046.49e-061.81e-05
speciesPorphyromonas_uenonis0.1047.25e-062.01e-05
speciesProteus_mirabilis0.1037.79e-062.15e-05
speciesPeptostreptococcus_stomatis0.1029.11e-062.5e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.1029.82e-062.67e-05
speciesBacteroides_uniformis-0.1029.86e-062.67e-05
speciesHoldemania_filiformis0.1021.08e-052.91e-05
phylumSynergistetes0.11.38e-053.64e-05
classSynergistia0.11.38e-053.64e-05
orderSynergistales0.11.38e-053.64e-05
familySynergistaceae0.11.38e-053.64e-05
genusOdoribacter-0.11.43e-053.75e-05
phylumViruses_noname0.0991.82e-054.72e-05
classViruses_noname0.0991.82e-054.72e-05
genusButyrivibrio-0.0991.86e-054.8e-05
speciesClostridium_sp_KLE_17550.0991.94e-054.98e-05
genusCampylobacter0.0982.16e-055.51e-05
familyCampylobacteraceae0.0982.37e-056.01e-05
speciesPeptostreptococcus_anaerobius0.0972.76e-056.97e-05
speciesGemella_morbillorum0.0972.83e-057.11e-05
speciesLactobacillus_fermentum0.0972.88e-057.19e-05
speciesOlsenella_unclassified0.0963.03e-057.53e-05
speciesStreptococcus_parasanguinis0.0963.13e-057.73e-05
speciesLactobacillus_rhamnosus0.0963.39e-058.33e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0963.42e-058.36e-05
genusSlackia0.0953.78e-059.2e-05
genusPorphyromonas0.0953.92e-059.49e-05
genusMegasphaera0.0954.11e-059.9e-05
genusPyramidobacter0.0944.49e-050.000107
speciesPyramidobacter_piscolens0.0944.49e-050.000107
genusParasutterella-0.0935.58e-050.000132
speciesParasutterella_excrementihominis-0.0935.58e-050.000132
genusAnaerotruncus0.0935.64e-050.000132
speciesPropionibacterium_freudenreichii0.0935.68e-050.000132
orderCaudovirales0.0935.69e-050.000132
speciesOdoribacter_splanchnicus-0.0936.11e-050.000141
classEpsilonproteobacteria0.0936.16e-050.000141
orderCampylobacterales0.0936.16e-050.000141
speciesLactobacillus_plantarum0.0917.88e-050.00018
speciesErysipelotrichaceae_bacterium_3_1_530.0918.19e-050.000186
speciesSutterella_wadsworthensis-0.0918.55e-050.000193
genusBilophila0.0918.61e-050.000194
speciesBilophila_unclassified0.099.12e-050.000204
speciesBlautia_hydrogenotrophica0.0890.0001220.000272
speciesClostridium_sp_ATCC_BAA_4420.0880.0001310.00029
speciesLactobacillus_vaginalis0.0870.0001550.000342
speciesDorea_longicatena0.0870.0001650.000361
speciesButyrivibrio_unclassified-0.0870.0001660.000361
speciesLactobacillus_gasseri0.0870.0001660.000361
speciesAcidaminococcus_intestini0.0870.0001680.000364
speciesLachnospiraceae_bacterium_5_1_63FAA0.0850.0002330.000502
genusSutterella-0.0850.0002340.000502
speciesBilophila_wadsworthia0.0840.0002650.000566
speciesRoseburia_hominis-0.0840.0002790.000593
speciesRuminococcus_sp_JC3040.0840.0002880.00061
genusAcidaminococcus0.0830.0003010.000634
speciesLachnospiraceae_bacterium_1_1_57FAA0.0820.0003580.000751
speciesEubacterium_dolichum0.0820.0003730.000779
familyLachnospiraceae0.0820.0003780.000786
speciesEnterobacteria_phage_HK5440.0820.0004170.000863
genusDesulfovibrio0.0810.000430.000886
speciesBifidobacterium_bifidum0.0810.0004390.000901
speciesLactobacillus_amylovorus0.0810.0004420.000903
speciesFusobacterium_varium0.0810.0004460.000907
genusSiphoviridae_noname0.080.0005240.00106
phylumFirmicutes0.080.0005530.00112
familyMicrococcaceae0.0790.0006560.00132
speciesBacteroides_eggerthii0.0790.000660.00132
genusRothia0.0780.0006980.00139
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0780.0007590.00151
genusPropionibacterium0.0770.0009130.0018
genusLambdalikevirus0.0760.0009360.00184
speciesMegasphaera_unclassified0.0760.001060.00207
speciesBacteroides_ovatus-0.0760.001060.00207
familySiphoviridae0.0750.001170.00226
speciesLactobacillus_crispatus0.0750.001170.00226
speciesMegasphaera_micronuciformis0.0750.001180.00227
speciesAlistipes_shahii-0.0740.001450.00278
familyPorphyromonadaceae-0.0730.001540.00294
speciesClostridium_perfringens0.0730.001580.00301
speciesEubacterium_siraeum-0.0730.001620.00307
familyMyoviridae0.0720.001760.00332
speciesRothia_mucilaginosa0.0710.002080.00391
speciesLeuconostoc_lactis0.0710.002230.00418
speciesAcidaminococcus_fermentans0.070.002390.00446
speciesDesulfovibrio_piger0.070.00240.00446
speciesCoprococcus_catus0.0690.002950.00546
familyBurkholderiales_noname-0.0690.0030.00553
genusBurkholderiales_noname-0.0680.003140.00574
speciesBurkholderiales_bacterium_1_1_47-0.0680.003140.00574
familyEubacteriaceae-0.0680.003260.00594
genusEubacterium-0.0680.003270.00594
genusCoriobacteriaceae_noname0.0680.00330.00597
speciesPrevotella_bivia0.0670.003720.0067
speciesMethanobrevibacter_unclassified0.0670.003890.00698
speciesCollinsella_tanakaei0.0670.004010.00717
speciesCoriobacteriaceae_bacterium_phI0.0660.004050.00721
genusParabacteroides-0.0660.00420.00745
speciesEubacterium_sp_3_1_310.0660.004380.00774
speciesRuminococcus_bromii0.0650.005220.00919
genusActinobacillus-0.0640.005610.00981
speciesActinobacillus_unclassified-0.0640.005610.00981
speciesBifidobacterium_pseudocatenulatum0.0640.005670.00988
orderPseudomonadales0.0630.006470.0112
speciesAnaerostipes_hadrus0.0630.006490.0112
speciesHoldemania_sp_AP20.0630.006610.0114
speciesStreptococcus_lutetiensis0.0630.006850.0118
genusCoprobacter-0.0620.0070.0119
speciesCoprobacter_fastidiosus-0.0620.0070.0119
speciesAlistipes_indistinctus0.0620.007520.0128
speciesOscillibacter_sp_KLE_1728-0.060.0090.0152
genusClostridiaceae_noname0.060.00920.0155
speciesClostridiaceae_bacterium_JC1180.060.00920.0155
speciesRuminococcus_lactaris-0.060.009970.0167
speciesLactobacillus_mucosae0.0590.01040.0173
speciesSlackia_piriformis0.0580.0120.0199
speciesLactobacillus_reuteri0.0570.01310.0217
speciesStreptococcus_pasteurianus0.0570.01330.0219
speciesParabacteroides_sp_D13-0.0570.01350.0221
speciesBifidobacterium_breve0.0570.01350.0221
speciesEggerthella_sp_1_3_56FAA0.0570.0140.0229
speciesBacteroides_pectinophilus-0.0550.01750.0285
speciesBifidobacterium_animalis0.0540.01890.0307
familyOxalobacteraceae0.0540.01950.0314
speciesParabacteroides_johnsonii0.0540.01950.0314
speciesParabacteroides_goldsteinii0.0530.02180.035
genusOxalobacter0.0530.02310.0368
speciesOxalobacter_formigenes0.0530.02310.0368
speciesLactobacillus_ruminis-0.0520.02330.037
speciesOdoribacter_unclassified-0.0520.02460.039
familyRikenellaceae-0.0510.02720.0428
genusAlistipes-0.0510.02720.0428
speciesEubacterium_cylindroides0.0510.02730.0428
familyPropionibacteriaceae0.0510.0290.0453
genusMethanosphaera0.050.02990.0464
speciesMethanosphaera_stadtmanae0.050.02990.0464
speciesBacteroides_nordii0.050.0310.048
speciesLactococcus_phage_P6800.0490.03390.0523
speciesParaprevotella_xylaniphila-0.0490.03470.0533
speciesStreptococcus_infantarius0.0490.03490.0535
speciesStreptococcus_phage_Sfi210.0490.03530.0539
genusMethanobrevibacter0.0480.03840.0585
familyStaphylococcaceae0.0480.03960.0601
speciesAlistipes_putredinis-0.0470.04020.0608
familyAcidaminococcaceae0.0470.04210.0631
familyPrevotellaceae-0.0470.04230.0631
classMethanobacteria0.0470.04240.0631
orderMethanobacteriales0.0470.04240.0631
familyMethanobacteriaceae0.0470.04240.0631
speciesAlistipes_finegoldii-0.0470.04350.0646
phylumEuryarchaeota0.0460.04530.067
speciesCoprococcus_sp_ART55_1-0.0460.04680.069
classClostridia0.0450.04960.0727
orderClostridiales0.0450.04960.0727
speciesBacteroides_massiliensis0.0450.04980.0728
speciesBacteroides_sp_3_1_190.0450.05070.0739
speciesBacteroides_sp_2_1_22-0.0450.05190.0754
speciesBacteroides_coprophilus-0.0450.05310.0769
speciesTuricibacter_unclassified0.0440.05690.0821
genusTunalikevirus0.0430.06210.0891
speciesMethanobrevibacter_smithii0.0430.06210.0891
speciesParaprevotella_unclassified-0.0430.06520.0933
speciesParaprevotella_clara-0.0420.06840.0975
genusPseudoflavonifractor-0.0420.06890.0977
speciesPseudoflavonifractor_capillosus-0.0420.06890.0977
speciesCoprococcus_eutactus-0.0420.06970.0985
genusParaprevotella-0.0420.07020.0989
speciesHaemophilus_paraphrohaemolyticus-0.0420.07070.0993
speciesBacteroides_dorei-0.0410.07440.104
genusBarnesiella-0.0410.07460.104
speciesBarnesiella_intestinihominis-0.0410.07460.104
speciesPrevotella_stercorea-0.0410.07520.104
speciesOdoribacter_laneus0.0410.0770.107
speciesTuricibacter_sanguinis0.0410.07720.107
speciesBacteroides_xylanisolvens-0.040.08030.111
genusTuricibacter0.040.08080.111
speciesButyrivibrio_crossotus-0.040.0810.111
speciesCampylobacter_concisus0.040.08680.118
genusButyricicoccus0.0380.09860.134
speciesButyricicoccus_pullicaecorum0.0380.09860.134
genusStaphylococcus0.0380.1010.137
speciesLactococcus_phage_936_sensu_lato-0.0380.1040.14
orderAeromonadales0.0370.1130.152
speciesMitsuokella_unclassified-0.0370.1130.152
speciesBacteroides_salanitronis-0.0360.1180.158
genusMitsuokella-0.0360.1230.164
speciesHoldemania_unclassified0.0360.1230.164
speciesEubacterium_ramulus0.0350.1270.168
speciesOscillibacter_unclassified-0.0350.1280.169
phylumVerrucomicrobia0.0350.1320.171
classVerrucomicrobiae0.0350.1320.171
orderVerrucomicrobiales0.0350.1320.171
familyVerrucomicrobiaceae0.0350.1320.171
genusAkkermansia0.0350.1320.171
speciesKlebsiella_phage_KP360.0350.1320.171
speciesAkkermansia_muciniphila0.0350.1320.171
speciesBacteroides_intestinalis0.0350.1330.172
speciesCoprococcus_comes0.0350.1350.174
familyOscillospiraceae-0.0340.1380.177
genusOscillibacter-0.0340.1380.177
speciesDorea_unclassified-0.0340.1450.185
speciesHaemophilus_sputorum-0.0340.1460.186
familyBacteroidales_noname-0.0330.1510.191
genusBacteroidales_noname-0.0330.1510.191
speciesBacteroidales_bacterium_ph8-0.0330.1510.191
speciesBacteroides_coprocola-0.0330.1570.198
speciesBacteroides_finegoldii0.0330.1570.198
speciesRuminococcus_champanellensis-0.0330.160.201
speciesParabacteroides_merdae-0.0320.1660.208
speciesAggregatibacter_segnis0.0320.1680.21
speciesLactococcus_phage_jm20.0310.1770.22
speciesVeillonella_parvula0.0310.1830.227
speciesParabacteroides_distasonis-0.030.1910.237
speciesDesulfovibrio_desulfuricans0.030.1990.246
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0290.2040.251
orderViruses_noname0.0290.2130.261
speciesMegamonas_funiformis-0.0290.2130.261
speciesCollinsella_intestinalis0.0290.2150.263
speciesLactobacillus_acidophilus0.0280.2190.266
speciesAcidaminococcus_unclassified0.0280.2190.266
speciesAlistipes_senegalensis-0.0280.2220.269
speciesBacteroides_oleiciplenus0.0280.2320.281
speciesAlistipes_sp_AP110.0270.2380.287
speciesBifidobacterium_angulatum-0.0270.2510.302
speciesVeillonella_atypica-0.0260.2540.305
speciesParabacteroides_unclassified-0.0260.2640.316
speciesAlistipes_unclassified-0.0260.2670.319
speciesAnaerotruncus_unclassified-0.0250.2740.327
genusSubdoligranulum0.0250.280.333
genusMegamonas0.0250.2820.334
speciesMegasphaera_elsdenii0.0250.2860.338
speciesClostridium_spiroforme0.0240.2920.345
speciesMegamonas_unclassified0.0240.2930.345
speciesBacteroides_stercoris0.0240.2960.348
speciesSutterella_parvirubra0.0240.2970.348
speciesBacteroides_cellulosilyticus-0.0240.3010.352
genusDialister0.0230.3120.364
speciesVeillonella_unclassified-0.0230.3160.367
familyRuminococcaceae0.0220.3390.393
familyPodoviridae0.0210.3610.417
speciesLachnospiraceae_bacterium_2_1_46FAA0.0210.3610.417
speciesBacteroides_fragilis0.0210.3670.422
speciesFusobacterium_mortiferum0.0210.370.425
speciesBacteroides_salyersiae0.020.3770.432
classNegativicutes0.020.3790.432
orderSelenomonadales0.020.3790.432
speciesBacteroides_sp_1_1_6-0.020.3820.434
speciesCollinsella_unclassified-0.020.390.443
speciesAlistipes_onderdonkii-0.020.3940.446
familyVeillonellaceae0.020.3990.448
genusMyoviridae_noname0.020.3990.448
speciesClostridium_sp_L2_50-0.020.3990.448
speciesBacteroides_clarus0.0190.4020.451
speciesRuminococcus_callidus-0.0190.4150.464
speciesBifidobacterium_catenulatum0.0180.4260.475
genusRuminococcaceae_noname-0.0180.4460.495
speciesRuminococcaceae_bacterium_D16-0.0180.4460.495
speciesBifidobacterium_adolescentis0.0170.4540.503
speciesPeptostreptococcaceae_noname_unclassified-0.0170.4550.503
genusCoprococcus0.0170.4590.506
speciesSubdoligranulum_unclassified0.0160.480.528
speciesEubacterium_biforme0.0160.4820.529
speciesPrevotella_buccae0.0160.4830.529
speciesDialister_invisus0.0150.5140.562
genusAggregatibacter0.0150.5160.562
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0150.5270.573
speciesMitsuokella_multacida-0.0140.5440.59
speciesAlistipes_sp_HGB5-0.0130.5710.618
speciesMegamonas_rupellensis0.0130.5750.621
speciesBacteroides_barnesiae-0.0130.580.625
speciesDialister_succinatiphilus0.0120.5990.644
genusPrevotella0.0120.6050.648
speciesBacteroides_plebeius-0.0120.6050.648
speciesLactobacillus_sanfranciscensis0.0120.6110.652
speciesPrevotella_copri0.0120.6150.655
speciesBacteroides_sp_4_3_47FAA0.0120.6170.655
genusCatenibacterium0.0120.6190.655
speciesCatenibacterium_mitsuokai0.0120.6190.655
speciesBacteroides_faecis-0.0110.6270.662
genusButyricimonas0.0110.6340.666
speciesButyricimonas_synergistica0.0110.6340.666
genusSutterellaceae_unclassified-0.010.6530.685
speciesRoseburia_unclassified0.010.6710.702
speciesEubacterium_ventriosum-0.0090.6960.727
speciesLactococcus_phage_phi70.0090.70.729
speciesLactococcus_phage_bIL67-0.0080.7170.745
familyViruses_noname0.0080.7310.757
genusViruses_noname0.0080.7310.757
speciesMegamonas_hypermegale0.0070.7540.779
speciesOscillibacter_sp_KLE_1745-0.0050.8140.839
genusSuccinatimonas0.0050.8220.843
speciesSuccinatimonas_hippei0.0050.8220.843
speciesBacteroides_fluxus0.0050.8340.854
genusAcidaminococcaceae_unclassified0.0040.8540.872
genusVeillonella0.0030.880.897
speciesBacteroides_thetaiotaomicron-0.0030.8910.906
speciesBacteroides_caccae-0.0020.9190.933
familySuccinivibrionaceae0.0020.9360.948
speciesVeillonella_dispar0.0020.9440.954
genusC2likevirus-0.0010.9560.963
speciesParabacteroides_sp_20_3-0.0010.9570.963
speciesC2likevirus_unclassified-0.0010.9610.965
genusPhascolarctobacterium0.00.9860.986
speciesPhascolarctobacterium_succinatutens0.00.9860.986
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.00689486711460.003415608162920.00074475460386214844.90433
Liver cirrhosisChina1201140.002316822279630.0006938751028070.00089356052669728724.4785
Crohns diseaseSpain17660.005257581387860.001493170801060.00167455492457486516.1762
Rheumatoid arthritisChina127980.003353633844930.001853483519650.133457450558669622.3297
ObesityDenmark1691230.001002755765860.0009107846006380.168774172076995632.7382
Colorectal cancerAustria64350.007031585987910.002276785433360.18157940743779026.3567
Type II diabetesDenmark752770.001026892084520.000893838209980.4616720107571967464.4901
Type II diabetesSweden53920.002946699647690.002666453828640.4846992682541579053.471
Ulcerative colitisSpain78660.001363380384860.001493170801060.671901808132317776.4564
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382