MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-13 21:14:02 PST
Job id & description: 1653, cutd3
Query type: protein
Count queries & homologs: 17, 4
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
CutD%fig|1720194.3.peg.1842|2693370CompleteK04069COG1180unknownunknown100.0100.099.68
CutD%fig|1720194.3.peg.1842|2685710CompleteK04069COG1180unknownunknown100.0100.088.67
CutD%fig|1720194.3.peg.1842|2527762CompleteK04069COG1180unknownunknown100.096.5683.5
CutD%fig|37659.3.peg.1829|2572087CompleteK04069COG1180Firmicutesunknown100.0100.082.02
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.3353.92e-501.85e-47
speciesClostridium_bolteae0.3313.65e-498.61e-47
speciesLachnospiraceae_bacterium_1_4_56FAA0.3114.24e-436.67e-41
speciesLachnospiraceae_bacterium_6_1_63FAA0.284.4e-354.44e-33
speciesLachnospiraceae_bacterium_9_1_43BFAA0.284.7e-354.44e-33
speciesEubacterium_dolichum0.2675.75e-324.52e-30
speciesClostridium_clostridioforme0.2611.37e-309.24e-29
genusFlavonifractor0.263.52e-301.85e-28
speciesFlavonifractor_plautii0.263.52e-301.85e-28
speciesClostridium_citroniae0.2531.27e-285.99e-27
speciesCoprobacillus_unclassified0.2256.48e-232.78e-21
genusCoprobacillus0.2155.89e-212.32e-19
speciesClostridium_ramosum0.2131.05e-203.81e-19
familyClostridiales_noname0.2097.24e-202.44e-18
speciesClostridium_symbiosum0.2081.12e-193.39e-18
speciesClostridiales_bacterium_1_7_47FAA0.2081.15e-193.39e-18
familyClostridiaceae0.2052.96e-198.22e-18
genusClostridium0.2036.36e-191.67e-17
speciesBlautia_producta0.1993.55e-188.82e-17
speciesEggerthella_unclassified0.1984.91e-181.16e-16
genusEggerthella0.1951.91e-174.29e-16
familyRuminococcaceae-0.1942.19e-174.7e-16
speciesAlistipes_senegalensis-0.1933.47e-177.12e-16
speciesEubacterium_siraeum-0.1934e-177.87e-16
speciesLachnospiraceae_bacterium_2_1_46FAA0.1917.52e-171.42e-15
speciesCoprococcus_catus-0.1865.9e-161.07e-14
speciesClostridium_nexile0.1848.96e-161.57e-14
familyFusobacteriaceae0.1812.99e-155.04e-14
speciesMethanobrevibacter_smithii-0.184.1e-156.67e-14
classMethanobacteria-0.1796.27e-159.25e-14
orderMethanobacteriales-0.1796.27e-159.25e-14
familyMethanobacteriaceae-0.1796.27e-159.25e-14
speciesSubdoligranulum_unclassified-0.1787.79e-151.11e-13
genusSubdoligranulum-0.1788e-151.11e-13
genusMethanobrevibacter-0.1788.57e-151.16e-13
genusFusobacterium0.1789.47e-151.24e-13
familyBacteroidaceae0.1761.67e-142.07e-13
genusBacteroides0.1761.67e-142.07e-13
phylumFusobacteria0.1752.36e-142.72e-13
classFusobacteriia0.1752.36e-142.72e-13
orderFusobacteriales0.1752.36e-142.72e-13
phylumEuryarchaeota-0.1743.26e-143.66e-13
speciesLachnospiraceae_bacterium_2_1_58FAA0.1734.67e-145.13e-13
speciesEubacterium_biforme-0.1727.2e-147.72e-13
speciesLachnospiraceae_bacterium_5_1_57FAA0.1718.95e-149.39e-13
speciesClostridium_hathewayi0.1691.69e-131.73e-12
speciesEubacterium_eligens-0.1664.49e-134.51e-12
familyBacteroidales_noname-0.1657.89e-137.45e-12
genusBacteroidales_noname-0.1657.89e-137.45e-12
speciesBacteroidales_bacterium_ph8-0.1657.89e-137.45e-12
speciesClostridium_asparagiforme0.1631.2e-121.11e-11
genusClostridiaceae_noname0.1631.28e-121.14e-11
speciesClostridiaceae_bacterium_JC1180.1631.28e-121.14e-11
speciesCoprococcus_sp_ART55_1-0.1621.57e-121.37e-11
speciesAnaerostipes_unclassified0.163.8e-123.22e-11
genusOxalobacter-0.163.89e-123.22e-11
speciesOxalobacter_formigenes-0.163.89e-123.22e-11
familyOxalobacteraceae-0.1577.74e-126.3e-11
genusClostridiales_noname0.1561.09e-118.72e-11
genusCoprococcus-0.1561.15e-119.05e-11
classClostridia-0.1498.25e-116.28e-10
orderClostridiales-0.1498.25e-116.28e-10
speciesAnaerotruncus_unclassified-0.1462.47e-101.85e-09
speciesFusobacterium_ulcerans0.1426.18e-104.56e-09
speciesRoseburia_hominis-0.1372.52e-091.81e-08
speciesRuminococcus_obeum-0.1372.53e-091.81e-08
speciesFusobacterium_varium0.1372.92e-092.06e-08
speciesMethanobrevibacter_unclassified-0.1355.22e-093.6e-08
speciesEscherichia_coli0.1345.27e-093.6e-08
phylumProteobacteria0.1346.07e-094.09e-08
speciesRuminococcus_lactaris-0.1321.01e-086.71e-08
speciesAlistipes_shahii-0.1311.42e-089.31e-08
genusEubacterium-0.131.86e-081.2e-07
familyEubacteriaceae-0.131.9e-081.21e-07
genusFaecalibacterium-0.1292.1e-081.3e-07
speciesFaecalibacterium_prausnitzii-0.1292.1e-081.3e-07
phylumVerrucomicrobia-0.1292.37e-081.36e-07
classVerrucomicrobiae-0.1292.37e-081.36e-07
orderVerrucomicrobiales-0.1292.37e-081.36e-07
familyVerrucomicrobiaceae-0.1292.37e-081.36e-07
genusAkkermansia-0.1292.37e-081.36e-07
speciesAkkermansia_muciniphila-0.1292.37e-081.36e-07
speciesCollinsella_aerofaciens-0.1264.54e-082.58e-07
genusButyricicoccus0.1255.5e-083.05e-07
speciesButyricicoccus_pullicaecorum0.1255.5e-083.05e-07
genusEscherichia0.1247.78e-084.27e-07
phylumBacteroidetes0.1231.02e-075.41e-07
classBacteroidia0.1231.02e-075.41e-07
orderBacteroidales0.1231.02e-075.41e-07
speciesErysipelotrichaceae_bacterium_3_1_530.1211.44e-077.55e-07
speciesErysipelotrichaceae_bacterium_2_2_44A0.121.88e-079.75e-07
speciesDorea_longicatena-0.1192.71e-071.39e-06
speciesBacteroides_vulgatus0.1182.78e-071.41e-06
speciesCoprococcus_eutactus-0.1182.83e-071.42e-06
speciesButyrivibrio_crossotus-0.1173.59e-071.78e-06
phylumFirmicutes-0.1146.99e-073.44e-06
speciesBacteroides_ovatus0.1147.25e-073.53e-06
speciesAlistipes_finegoldii-0.1139.38e-074.52e-06
genusButyrivibrio-0.1121.11e-065.29e-06
speciesBifidobacterium_adolescentis-0.1121.24e-065.85e-06
orderEnterobacteriales0.1121.28e-065.92e-06
familyEnterobacteriaceae0.1121.28e-065.92e-06
speciesOlsenella_unclassified-0.1121.31e-066e-06
speciesClostridium_sp_KLE_17550.1111.63e-067.4e-06
speciesRuminococcus_callidus-0.111.73e-067.78e-06
genusBlautia0.1073.24e-061.44e-05
speciesEubacterium_rectale-0.1073.5e-061.54e-05
speciesAnaerotruncus_colihominis0.1073.8e-061.66e-05
genusOlsenella-0.1055.27e-062.28e-05
classGammaproteobacteria0.1055.76e-062.47e-05
genusBarnesiella-0.1055.86e-062.47e-05
speciesBarnesiella_intestinihominis-0.1055.86e-062.47e-05
speciesClostridium_sp_L2_50-0.1046.28e-062.62e-05
speciesBlautia_hydrogenotrophica0.1038.3e-063.44e-05
speciesEubacterium_sp_3_1_310.1011.11e-054.56e-05
genusAdlercreutzia-0.1011.17e-054.68e-05
speciesAdlercreutzia_equolifaciens-0.1011.17e-054.68e-05
genusMethanosphaera-0.1011.18e-054.68e-05
speciesMethanosphaera_stadtmanae-0.1011.18e-054.68e-05
speciesEggerthella_lenta0.1011.29e-055.07e-05
speciesParabacteroides_unclassified0.11.34e-055.23e-05
speciesCoprococcus_comes-0.0982.32e-058.98e-05
speciesCollinsella_intestinalis0.0982.34e-058.98e-05
familyRikenellaceae-0.0972.41e-059.1e-05
genusAlistipes-0.0972.41e-059.1e-05
speciesRuminococcus_champanellensis-0.0963.13e-050.000117
speciesCollinsella_unclassified0.0953.55e-050.000132
speciesMegamonas_unclassified0.0945e-050.000184
genusMegamonas0.0935.41e-050.000196
speciesBacteroides_fragilis0.0935.41e-050.000196
genusCoriobacteriaceae_noname0.0935.78e-050.000208
genusCoprobacter-0.0926.29e-050.000223
speciesCoprobacter_fastidiosus-0.0926.29e-050.000223
speciesCoriobacteriaceae_bacterium_phI0.0927.26e-050.000256
speciesAlistipes_putredinis-0.0918.08e-050.000283
speciesFusobacterium_mortiferum0.099.43e-050.000327
genusMitsuokella-0.099.68e-050.000332
genusMegasphaera0.099.7e-050.000332
familyVeillonellaceae0.0890.0001150.000391
speciesMegasphaera_micronuciformis0.0890.0001220.000411
speciesBilophila_wadsworthia0.0870.0001640.000549
speciesMitsuokella_unclassified-0.0870.0001770.000588
speciesBacteroides_cellulosilyticus-0.0860.0002140.000706
genusParabacteroides0.0850.0002370.000777
speciesEubacterium_ramulus-0.0850.0002440.000794
genusAnaerotruncus-0.0840.0002670.000863
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0830.0003290.00106
speciesAlistipes_indistinctus-0.0830.0003380.00108
genusCollinsella-0.0830.0003410.00108
classNegativicutes0.0830.000350.00109
orderSelenomonadales0.0830.000350.00109
speciesBacteroides_intestinalis-0.0820.0003780.00117
genusRuminococcus-0.080.0005760.00178
genusLachnospiraceae_noname0.0790.0006220.00191
speciesEscherichia_unclassified0.0790.0006280.00191
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0790.0006330.00192
speciesDorea_unclassified0.0770.0009010.00271
speciesStreptococcus_lutetiensis0.0760.001010.00302
speciesBacteroides_pectinophilus-0.0760.001030.00306
genusPantoea0.0760.001080.00317
speciesPantoea_unclassified0.0760.001080.00317
speciesStreptococcus_mitis_oralis_pneumoniae0.0750.001150.00335
speciesRuminococcus_bromii-0.0750.001170.00339
familyOscillospiraceae0.0740.001330.0038
genusOscillibacter0.0740.001330.0038
speciesMegamonas_rupellensis0.0730.00160.00455
genusButyricimonas-0.0720.001780.005
speciesButyricimonas_synergistica-0.0720.001780.005
speciesVeillonella_atypica0.0720.001820.00508
speciesKlebsiella_pneumoniae0.0710.002120.00589
genusOdoribacter-0.070.002290.00632
speciesRuminococcus_sp_JC304-0.0690.002670.00733
speciesLactobacillus_ruminis-0.0690.002720.00742
speciesOscillibacter_sp_KLE_17280.0690.002750.00746
speciesParaprevotella_unclassified-0.0690.00290.00782
speciesBacteroides_sp_3_1_190.0690.002950.00789
genusDorea-0.0690.002960.00789
speciesOscillibacter_sp_KLE_17450.0680.003190.00846
speciesAlistipes_onderdonkii-0.0680.003280.00865
genusParaprevotella-0.0680.003370.00884
speciesBifidobacterium_longum-0.0670.003570.00931
speciesOscillibacter_unclassified0.0670.003920.0102
orderBifidobacteriales-0.0660.004110.0105
familyBifidobacteriaceae-0.0660.004110.0105
genusCatenibacterium-0.0650.004630.0117
speciesCatenibacterium_mitsuokai-0.0650.004630.0117
genusBilophila0.0650.004910.0124
speciesMegamonas_hypermegale0.0650.004940.0124
genusBifidobacterium-0.0650.005120.0128
speciesPropionibacterium_freudenreichii-0.0650.005210.0129
genusSutterellaceae_unclassified0.0640.005290.0131
speciesBacteroides_thetaiotaomicron0.0640.005430.0133
speciesClostridium_sp_ATCC_BAA_4420.0630.00610.0149
speciesOdoribacter_splanchnicus-0.0630.006520.0159
speciesMegamonas_funiformis0.0630.006660.0161
speciesParaprevotella_clara-0.0620.00710.0171
speciesEnterobacter_aerogenes0.0620.007250.0174
speciesMitsuokella_multacida-0.0620.007440.0177
genusHoldemania0.0620.007660.0182
genusPhascolarctobacterium-0.0610.008360.0196
speciesPhascolarctobacterium_succinatutens-0.0610.008360.0196
genusKlebsiella0.0610.00840.0196
speciesVeillonella_parvula0.060.008930.0208
speciesBilophila_unclassified0.060.009960.023
genusEnterobacter0.0590.01020.0235
speciesStreptococcus_pasteurianus0.0580.01170.0268
speciesBacteroides_stercoris0.0580.01180.0269
genusLactobacillus-0.0570.01320.03
genusSolobacterium0.0570.01390.0312
speciesSolobacterium_moorei0.0570.01390.0312
speciesPeptostreptococcaceae_noname_unclassified-0.0570.01450.0324
speciesStreptococcus_australis0.0560.01460.0325
speciesEubacterium_ventriosum-0.0560.01490.033
speciesCollinsella_tanakaei0.0550.01680.0371
speciesEnterobacter_cloacae0.0550.01730.038
classBetaproteobacteria0.0550.01770.0385
genusTuricibacter-0.0550.01770.0385
speciesClostridium_perfringens0.0550.01840.0398
speciesEubacterium_hallii-0.0540.01950.042
speciesMegasphaera_unclassified0.0540.01990.0427
genusPropionibacterium-0.0530.0210.0449
orderBurkholderiales0.0530.02120.0451
familySutterellaceae0.0530.02130.0451
speciesTuricibacter_unclassified-0.0530.02310.0485
speciesAcidaminococcus_intestini0.0520.02320.0485
speciesEubacterium_cylindroides-0.0530.02320.0485
speciesHoldemania_sp_AP20.0520.02480.0516
phylumActinobacteria-0.0520.02560.0528
classActinobacteria-0.0520.02560.0528
familyLactobacillaceae-0.0510.0270.0554
speciesFusobacterium_nucleatum0.0510.02730.0558
genusVeillonella0.050.02960.0602
speciesLachnospiraceae_bacterium_7_1_58FAA0.050.03020.0612
speciesHaemophilus_paraphrohaemolyticus0.050.0310.0625
speciesAlistipes_sp_HGB5-0.050.0320.0643
speciesParaprevotella_xylaniphila-0.0490.03450.069
speciesVeillonella_dispar0.0490.03470.0691
genusMorganella0.0480.03620.0715
speciesMorganella_morganii0.0480.03620.0715
speciesKlebsiella_sp_MS_92_30.0480.03660.072
genusPeptostreptococcus0.0480.040.0783
speciesErysipelotrichaceae_bacterium_6_1_450.0470.04060.0792
speciesDesulfovibrio_piger-0.0470.04250.0826
speciesBacteroides_sp_4_3_47FAA-0.0470.04270.0826
speciesBifidobacterium_breve0.0470.04340.0836
genusPseudoflavonifractor-0.0460.04440.0848
speciesPseudoflavonifractor_capillosus-0.0460.04440.0848
genusAggregatibacter0.0460.0460.0875
classDeltaproteobacteria0.0460.04830.0908
orderDesulfovibrionales0.0460.04830.0908
familyDesulfovibrionaceae0.0460.04830.0908
orderAeromonadales0.0460.0490.0918
genusAcidaminococcus0.0450.04930.092
speciesCampylobacter_concisus0.0450.05060.094
speciesDorea_formicigenerans-0.0450.05340.0988
genusErysipelotrichaceae_noname-0.0440.05590.103
speciesAlistipes_sp_AP11-0.0440.05690.105
speciesAcidaminococcus_unclassified0.0440.05970.109
speciesKlebsiella_oxytoca0.0430.06080.111
familyMicrococcaceae-0.0430.06130.111
genusRothia-0.0430.06260.113
speciesEubacterium_limosum0.0430.06580.119
familyBacillales_noname0.0420.06670.119
genusGemella0.0420.06670.119
speciesKlebsiella_unclassified0.0420.07130.127
genusLeuconostoc-0.0420.07170.127
genusSlackia0.0410.07370.13
speciesStreptococcus_sanguinis0.0410.07430.131
speciesBifidobacterium_angulatum-0.0410.07520.132
speciesBifidobacterium_catenulatum-0.0410.07830.137
speciesDialister_invisus0.0410.07840.137
speciesPrevotella_bivia0.040.08460.147
speciesBacteroides_coprophilus-0.040.0870.15
speciesLactobacillus_acidophilus-0.040.08720.15
speciesTuricibacter_sanguinis-0.0380.09710.167
speciesAcidaminococcus_fermentans-0.0380.0980.168
speciesStreptococcus_phage_Sfi210.0380.10.17
speciesCoprobacillus_sp_D60.0380.1040.177
genusActinobacillus0.0370.1060.179
speciesActinobacillus_unclassified0.0370.1060.179
speciesAggregatibacter_segnis0.0370.1070.18
speciesBifidobacterium_pseudocatenulatum0.0370.1130.189
speciesLactococcus_phage_jm2-0.0360.1180.197
familyMyoviridae0.0360.120.199
speciesLactococcus_phage_bIL670.0360.120.199
speciesHaemophilus_sputorum0.0360.1210.2
speciesPorphyromonas_asaccharolytica-0.0360.1230.202
speciesRothia_mucilaginosa-0.0360.1240.203
speciesVeillonella_unclassified0.0350.1250.204
speciesBacteroides_massiliensis0.0350.1260.205
speciesBacteroides_sp_1_1_60.0350.1330.215
speciesErysipelotrichaceae_bacterium_21_30.0350.1330.215
genusAnaerostipes0.0350.1340.216
speciesBacteroides_faecis0.0340.1380.222
speciesLachnospiraceae_bacterium_5_1_63FAA0.0340.140.224
speciesParabacteroides_goldsteinii-0.0340.1420.226
speciesPrevotella_stercorea-0.0340.1430.226
speciesLachnospiraceae_bacterium_1_1_57FAA0.0340.1430.226
speciesPeptostreptococcus_stomatis0.0330.1520.24
orderCoriobacteriales-0.0330.1580.248
familyCoriobacteriaceae-0.0330.1580.248
speciesSlackia_piriformis0.0330.1590.249
speciesBacteroides_xylanisolvens0.0320.1680.262
speciesLactobacillus_delbrueckii-0.0320.170.264
familyPorphyromonadaceae0.0310.1810.28
orderViruses_noname0.0310.1820.281
genusBurkholderiales_noname0.0310.1840.282
speciesBurkholderiales_bacterium_1_1_470.0310.1840.282
speciesGemella_morbillorum0.0310.1850.283
genusMyoviridae_noname0.030.1880.286
speciesClostridium_bartlettii0.030.1890.287
genusDialister0.030.1920.29
orderActinomycetales-0.030.1960.294
speciesBacteroides_dorei0.030.1960.294
speciesLactobacillus_rhamnosus-0.030.1970.294
speciesRuminococcus_torques0.030.1970.294
speciesBacteroides_sp_2_1_220.030.1980.294
familyBurkholderiales_noname0.030.1990.294
speciesPeptostreptococcus_anaerobius0.030.1990.294
genusPorphyromonas-0.030.2020.298
speciesHoldemania_filiformis0.0290.2070.304
speciesStreptococcus_mutans-0.0290.2080.305
speciesOdoribacter_laneus-0.0290.2110.308
familyPrevotellaceae-0.0290.2130.31
genusWeissella0.0280.2190.318
speciesSutterella_wadsworthensis-0.0280.2230.323
familyLachnospiraceae-0.0280.2270.328
speciesAlistipes_unclassified0.0280.2330.335
orderBacillales0.0270.240.343
familyPodoviridae0.0270.240.343
speciesWeissella_confusa0.0270.2440.347
speciesLactobacillus_fermentum-0.0270.2440.347
speciesStreptococcus_gordonii0.0270.2470.35
speciesLactobacillus_casei_paracasei-0.0260.2540.359
classErysipelotrichia-0.0260.2570.36
orderErysipelotrichales-0.0260.2570.36
familyErysipelotrichaceae-0.0260.2570.36
speciesBacteroides_uniformis0.0260.2590.362
speciesStreptococcus_parasanguinis-0.0260.2660.37
genusProteus0.0260.270.375
genusPeptoniphilus0.0250.2740.379
classEpsilonproteobacteria0.0250.2820.388
orderCampylobacterales0.0250.2820.388
speciesBacteroides_salanitronis-0.0250.2870.393
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0250.2870.393
familyCampylobacteraceae0.0240.3010.411
speciesEnterococcus_faecalis0.0240.3050.415
genusSutterella-0.0230.3120.423
genusCampylobacter0.0230.3160.427
orderPseudomonadales-0.0230.3230.436
speciesDesulfovibrio_desulfuricans0.0230.330.444
speciesClostridium_leptum-0.0220.3320.445
genusDesulfovibrio-0.0220.3330.445
speciesLactobacillus_sanfranciscensis0.0220.3380.451
genusLambdalikevirus0.0220.3440.457
speciesLactobacillus_reuteri-0.0220.3510.465
speciesPorphyromonas_uenonis-0.0210.3540.468
familyClostridiales_Family_XI_Incertae_Sedis0.0210.3570.471
speciesProteus_mirabilis0.0210.360.473
speciesButyrivibrio_unclassified-0.0210.3640.477
genusCitrobacter0.0210.370.484
speciesBifidobacterium_dentium-0.020.3970.518
classBacilli-0.0190.4020.523
genusSiphoviridae_noname-0.0190.4170.541
speciesBacteroides_coprocola-0.0190.420.543
familyAcidaminococcaceae-0.0180.4270.551
speciesHoldemania_unclassified0.0180.440.564
speciesRoseburia_unclassified-0.0180.440.564
speciesBacteroides_eggerthii-0.0180.4420.565
genusAcidaminococcaceae_unclassified0.0180.4430.565
orderLactobacillales-0.0180.4440.565
speciesParabacteroides_distasonis0.0180.4490.57
speciesClostridium_spiroforme0.0170.4630.586
speciesLactobacillus_crispatus0.0170.4650.587
speciesEggerthella_sp_1_3_56FAA-0.0170.4690.59
speciesCitrobacter_freundii0.0160.4760.598
speciesLactobacillus_amylovorus-0.0160.4780.598
speciesBifidobacterium_bifidum-0.0160.4810.601
familyActinomycetaceae-0.0160.4930.614
genusPrevotella-0.0150.5070.63
genusTunalikevirus0.0150.520.643
speciesAnaerostipes_hadrus-0.0150.520.643
speciesStreptococcus_thermophilus-0.0150.5240.646
genusActinomyces-0.0140.5310.653
phylumSynergistetes0.0140.5450.663
classSynergistia0.0140.5450.663
orderSynergistales0.0140.5450.663
familySynergistaceae0.0140.5450.663
familyViruses_noname0.0140.5490.664
genusViruses_noname0.0140.5490.664
genusRuminococcaceae_noname-0.0140.5560.668
speciesParabacteroides_sp_D13-0.0140.5560.668
speciesRuminococcaceae_bacterium_D16-0.0140.5560.668
speciesCitrobacter_unclassified0.0130.5690.682
speciesPrevotella_buccae0.0130.5760.686
genusC2likevirus0.0130.5770.686
speciesSutterella_parvirubra0.0130.5770.686
genusSuccinatimonas0.0130.5880.696
speciesSuccinatimonas_hippei0.0130.5880.696
speciesParabacteroides_johnsonii-0.0120.5990.707
familyPropionibacteriaceae-0.0120.6070.714
speciesBacteroides_salyersiae-0.0120.6080.714
genusRoseburia0.0120.6120.717
genusParvimonas-0.0120.6160.717
genusLactococcus-0.0120.6170.717
speciesParvimonas_unclassified-0.0120.6170.717
speciesSubdoligranulum_sp_4_3_54A2FAA0.0110.6210.72
speciesBacteroides_plebeius0.0110.6220.72
speciesC2likevirus_unclassified0.0110.6290.726
speciesRoseburia_intestinalis0.0110.6320.728
speciesLeuconostoc_lactis-0.0110.6360.728
genusStaphylococcus-0.0110.6370.728
speciesLactococcus_garvieae-0.0110.6370.728
orderCaudovirales0.0110.6420.732
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0110.6450.734
speciesEnterococcus_faecium-0.010.6620.747
genusPyramidobacter0.010.6630.747
speciesPyramidobacter_piscolens0.010.6630.747
speciesParabacteroides_merdae-0.010.6630.747
familySuccinivibrionaceae0.010.6740.757
familyStaphylococcaceae0.010.6750.757
phylumViruses_noname0.0090.6840.763
classViruses_noname0.0090.6840.763
genusHaemophilus0.0090.6890.767
speciesBacteroides_finegoldii-0.0090.6910.767
speciesStreptococcus_anginosus0.0090.70.776
speciesStreptococcus_salivarius-0.0090.710.785
speciesLactobacillus_oris0.0080.7150.786
speciesLactococcus_phage_936_sensu_lato0.0080.7170.786
genusGordonibacter-0.0080.7180.786
speciesGordonibacter_pamelaeae-0.0080.7180.786
speciesLactobacillus_vaginalis0.0080.7230.789
speciesBacteroides_oleiciplenus0.0080.7240.789
speciesHaemophilus_parainfluenzae0.0080.730.794
genusParasutterella0.0080.7370.798
speciesParasutterella_excrementihominis0.0080.7370.798
speciesBacteroides_nordii-0.0070.7580.817
speciesEnterobacteria_phage_HK5440.0070.7590.817
speciesBacteroides_barnesiae-0.0070.760.817
orderPasteurellales0.0070.7660.82
familyPasteurellaceae0.0070.7660.82
speciesBacteroides_caccae-0.0070.7720.824
speciesPrevotella_copri-0.0060.7880.84
speciesParabacteroides_sp_20_3-0.0060.7930.841
speciesLactobacillus_plantarum-0.0060.7930.841
speciesLactococcus_phage_phi70.0060.7960.842
speciesLactobacillus_salivarius-0.0050.8210.867
speciesLactobacillus_mucosae0.0050.8270.868
familyLeuconostocaceae-0.0050.8280.868
speciesBacteroides_fluxus0.0050.8280.868
speciesCoprobacillus_sp_29_1-0.0040.850.889
speciesOdoribacter_unclassified0.0040.8510.889
familyPeptostreptococcaceae-0.0040.8730.91
familyStreptococcaceae-0.0040.8760.911
speciesStreptococcus_infantarius0.0030.8820.913
speciesLactococcus_phage_P680-0.0030.8820.913
speciesKlebsiella_phage_KP360.0030.8840.913
speciesBifidobacterium_animalis-0.0030.8910.918
familySiphoviridae-0.0030.8960.921
speciesStreptococcus_vestibularis0.0030.9020.926
genusStreptococcus-0.0030.9050.927
speciesMegasphaera_elsdenii-0.0020.9320.95
familyEnterococcaceae0.0020.9360.95
genusEnterococcus0.0020.9360.95
speciesDialister_succinatiphilus0.0020.9360.95
speciesRuminococcus_sp_5_1_39BFAA-0.0020.9420.954
genusPeptostreptococcaceae_noname-0.0020.9470.957
speciesLactococcus_lactis-0.0010.9550.963
speciesBacteroides_clarus0.0010.9640.967
speciesLactobacillus_gasseri0.0010.9650.967
speciesRoseburia_inulinivorans-0.0010.9650.967
speciesWeissella_cibaria0.0010.9760.976
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.005735857883670.0009404771908432.60063953819e-07990.329177
Ulcerative colitisSpain78660.000381591889670.0009404771908430.2110382898811100136.2902
Colorectal cancerAustria64350.001372662748916.83382434937e-050.3070565409061264242.773
ObesityDenmark1691230.0006574776375350.0004415960852170.3168379345431452247.7525
Type II diabetesSweden53920.0005568506656350.0002409302230020.502144914541618854.8188
Type II diabetesDenmark752770.0007951693833620.0005644788542790.6638372102062410979.0278
Type II diabetesChina1831850.001150564078660.001400858359840.7662059506392602586.0075
Liver cirrhosisChina1201140.0004056974025050.0006474572568280.8588258650812824394.8739
Rheumatoid arthritisChina127980.000804531242970.0008577888021050.8668798831042688089.6388
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382