MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-15 08:33:24 PST
Job id & description: 1655, FR
Query type: protein
Count queries & homologs: 1, 56
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
FR2406934CompleteunknownCOG0655unknownunknown100.094.22100.0
FR2597294CompleteunknownCOG0655unknownunknown99.6898.4163.87
FR2628625CompleteunknownCOG0655unknownunknown99.6899.0463.55
FR2656801CompleteunknownCOG0655FusobacteriaFusobacterium99.3599.6862.58
FR2671371CompleteunknownCOG0655FusobacteriaFusobacterium99.68100.063.02
FR2657186CompleteunknownCOG0655unknownunknown99.68100.063.99
FR2779706Lack 5'-endunknownCOG0655FusobacteriaFusobacterium97.42100.062.71
FR2630110CompleteunknownCOG0655unknownunknown99.68100.062.94
FR3244212Lack 3'-endunknownCOG0655FusobacteriaFusobacterium88.06100.065.82
FR2671150CompleteunknownCOG0655unknownunknown99.35100.061.29
FR2684901CompleteunknownCOG0655unknownunknown99.35100.060.52
FR2499453CompleteunknownCOG0655unknownunknown99.0399.0760.94
FR2515262CompleteunknownCOG0655unknownunknown99.68100.059.32
FR2522664CompleteunknownCOG0655unknownunknown99.35100.058.88
FR2986995Lack 5'-endunknownCOG0655unknownunknown92.9100.062.07
FR2500594Lack 5'-endunknownCOG0655Actinobacteriaunknown99.35100.052.8
FR2374758CompleteunknownCOG0655ActinobacteriaOlsenella99.3596.9952.48
FR2502567CompleteunknownCOG0655unknownunknown99.6899.3850.31
FR2682687Lack 3'-endunknownCOG0655ActinobacteriaOlsenella94.5299.0353.42
FR2445055CompleteunknownCOG0655unknownunknown98.3998.4742.99
FR2461357CompleteunknownCOG0655unknownunknown99.6899.3842.41
FR2208017CompleteunknownCOG0655unknownunknown99.6893.6242.41
FR3515877Lack 5'-endunknownCOG0655Actinobacteriaunknown78.3999.6152.53
FR2760956Lack 3'-endunknownCOG0655unknownunknown93.55100.043.14
FR4018261Lack 5'-endunknownCOG0655unknownunknown71.2996.1243.05
FR2213629CompleteunknownCOG0655FirmicutesClostridium96.7790.7232.92
FR2791081CompleteunknownCOG0655unknownunknown99.68100.030.53
FR2325026CompleteunknownCOG0655Firmicutesunknown89.0386.932.42
FR2212446CompleteunknownCOG0655Firmicutesunknown89.0384.6432.2
FR2649221CompleteunknownCOG0655unknownunknown95.1697.7531.7
FR2548189CompleteunknownCOG0655Firmicutesunknown97.198.7431.78
FR2868877CompleteunknownCOG0655unknownunknown99.03100.030.6
FR2463381CompleteunknownCOG0655Firmicutesunknown89.0389.8531.74
FR2875220CompleteunknownCOG0655unknownunknown99.03100.030.09
FR2514699CompleteunknownCOG0655unknownunknown93.8796.5730.65
FR2597353CompleteunknownCOG0655unknownunknown91.9495.5630.56
FR2531220CompleteunknownCOG0655unknownunknown88.7190.9432.88
FR2558564CompleteunknownCOG0655Firmicutesunknown97.198.7431.46
FR2462943CompleteunknownCOG0655Firmicutesunknown89.0389.8531.19
FR2515234CompleteunknownCOG0655Firmicutesunknown93.8796.5731.94
FR2467411CompleteunknownCOG0655FirmicutesClostridium89.0389.8530.27
FR2491893CompleteunknownCOG0655Firmicutesunknown89.0389.4733.45
FR2426528CompleteunknownCOG0655unknownunknown89.0389.3330.61
FR2533022CompleteunknownCOG0655FirmicutesClostridium94.1997.1932.6
FR1880840Lack 5'-endunknownCOG0655unknownunknown89.0376.2731.25
FR3162285Lack 3'-endunknownCOG0655unknownunknown82.5897.1432.35
FR2598617CompleteunknownCOG0655Firmicutesunknown90.090.1630.98
FR2612620CompleteunknownCOG0655unknownunknown94.8497.7730.63
FR2491706CompleteunknownCOG0655Firmicutesunknown94.1997.2132.17
FR2520447CompleteunknownCOG0655Firmicutesunknown93.8796.8831.29
FR2413931CompleteunknownCOG0655Firmicutesunknown97.196.0532.08
FR2528421CompleteunknownCOG0655Firmicutesunknown94.1997.1930.87
FR2599735CompleteunknownCOG0655unknownunknown95.1697.4630.31
FR2076473CompleteunknownCOG0655unknownunknown88.7180.3930.43
FR3048022Lack 3'-endunknownCOG0655Firmicutesunknown80.090.9432.18
FR3459471Lack 3'-endunknownCOG0655Firmicutesunknown70.6588.1733.33
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.3276.74e-483.18e-45
genusEggerthella0.3121.85e-434.37e-41
speciesEggerthella_unclassified0.3051.32e-412.08e-39
speciesRuminococcus_gnavus0.2941.22e-381.44e-36
speciesLachnospiraceae_bacterium_1_4_56FAA0.2916.27e-385.92e-36
genusFlavonifractor0.2861.79e-361.21e-34
speciesFlavonifractor_plautii0.2861.79e-361.21e-34
speciesClostridium_bolteae0.2798.03e-354.74e-33
familyClostridiales_noname0.2562.79e-291.46e-27
speciesRuminococcus_torques0.2554.42e-292.09e-27
genusLachnospiraceae_noname0.2545.18e-292.15e-27
speciesClostridium_symbiosum0.2545.47e-292.15e-27
familyClostridiaceae0.2496.61e-282.4e-26
genusClostridium0.2481.28e-274.32e-26
genusCoprobacillus0.2413.22e-261.01e-24
speciesClostridium_hathewayi0.2414.34e-261.28e-24
speciesLachnospiraceae_bacterium_5_1_63FAA0.245.44e-261.51e-24
speciesCoprobacillus_unclassified0.2291.33e-233.49e-22
speciesEggerthella_lenta0.2264.28e-231.06e-21
speciesClostridiales_bacterium_1_7_47FAA0.2222.15e-225.07e-21
genusAnaerostipes0.2131.53e-203.44e-19
speciesLachnospiraceae_bacterium_5_1_57FAA0.214.57e-209.8e-19
speciesClostridium_clostridioforme0.2096.12e-201.26e-18
speciesRuminococcus_sp_5_1_39BFAA0.2097.54e-201.48e-18
speciesBlautia_producta0.2052.93e-195.53e-18
orderCoriobacteriales0.2021.29e-182.26e-17
familyCoriobacteriaceae0.2021.29e-182.26e-17
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1993.36e-185.66e-17
speciesLachnospiraceae_bacterium_6_1_63FAA0.1994.01e-186.53e-17
speciesClostridium_asparagiforme0.1961.03e-171.6e-16
speciesClostridium_ramosum0.1961.05e-171.6e-16
speciesClostridium_citroniae0.1961.15e-171.7e-16
genusHoldemania0.199.84e-171.41e-15
speciesAnaerotruncus_colihominis0.1873.74e-165.19e-15
genusClostridiales_noname0.1831.44e-151.94e-14
speciesEubacterium_hallii0.1789.94e-151.3e-13
phylumActinobacteria0.1743.81e-144.73e-13
classActinobacteria0.1743.81e-144.73e-13
genusRuminococcus0.1691.78e-132.15e-12
familyPrevotellaceae-0.1691.88e-132.22e-12
speciesErysipelotrichaceae_bacterium_6_1_450.1682.49e-132.87e-12
familyStreptococcaceae0.1682.73e-133.07e-12
speciesErysipelotrichaceae_bacterium_2_2_44A0.1682.93e-133.22e-12
speciesBlautia_hydrogenotrophica0.1673.59e-133.85e-12
genusStreptococcus0.1673.96e-134.15e-12
speciesLachnospiraceae_bacterium_2_1_58FAA0.1641.07e-121.1e-11
speciesClostridium_nexile0.1621.7e-121.71e-11
genusSolobacterium0.162.97e-122.86e-11
speciesSolobacterium_moorei0.162.97e-122.86e-11
speciesRuminococcus_obeum0.163.78e-123.57e-11
familyFusobacteriaceae0.1594.36e-124.04e-11
speciesEubacterium_ramulus0.1585.92e-125.37e-11
phylumFusobacteria0.1586.76e-125.8e-11
classFusobacteriia0.1586.76e-125.8e-11
orderFusobacteriales0.1586.76e-125.8e-11
speciesStreptococcus_salivarius0.1586.99e-125.89e-11
genusPrevotella-0.1561.22e-111.01e-10
genusFusobacterium0.1551.7e-111.38e-10
speciesOdoribacter_splanchnicus-0.1541.93e-111.54e-10
speciesFusobacterium_mortiferum0.1533.05e-112.4e-10
familyLachnospiraceae0.1523.79e-112.93e-10
genusOdoribacter-0.1515.41e-114.12e-10
speciesEubacterium_dolichum0.1498.21e-116.15e-10
speciesAnaerostipes_hadrus0.1499.16e-116.76e-10
speciesAnaerostipes_unclassified0.1481.32e-109.59e-10
speciesPrevotella_copri-0.1462.55e-101.82e-09
speciesAlistipes_shahii-0.1443.96e-102.79e-09
speciesAlistipes_senegalensis-0.1444.45e-103.09e-09
classBacilli0.1382.22e-091.52e-08
orderLactobacillales0.1363.22e-092.17e-08
speciesErysipelotrichaceae_bacterium_21_30.1363.28e-092.18e-08
genusCatenibacterium-0.1363.86e-092.47e-08
speciesCatenibacterium_mitsuokai-0.1363.86e-092.47e-08
speciesButyrivibrio_crossotus-0.1363.87e-092.47e-08
speciesDorea_formicigenerans0.1355.11e-093.22e-08
speciesEubacterium_sp_3_1_310.1346.19e-093.84e-08
genusGordonibacter0.1346.5e-093.93e-08
speciesGordonibacter_pamelaeae0.1346.5e-093.93e-08
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1337.76e-094.64e-08
genusActinomyces0.131.61e-089.5e-08
familyBacteroidales_noname-0.131.81e-081.03e-07
genusBacteroidales_noname-0.131.81e-081.03e-07
speciesBacteroidales_bacterium_ph8-0.131.81e-081.03e-07
genusMitsuokella-0.1291.97e-081.11e-07
genusDorea0.1292.43e-081.35e-07
familyBacillales_noname0.1282.49e-081.35e-07
genusGemella0.1282.49e-081.35e-07
orderBacillales0.1282.58e-081.38e-07
phylumBacteroidetes-0.1273.51e-081.83e-07
classBacteroidia-0.1273.53e-081.83e-07
orderBacteroidales-0.1273.53e-081.83e-07
classClostridia0.1264.4e-082.23e-07
orderClostridiales0.1264.4e-082.23e-07
speciesClostridium_sp_ATCC_BAA_4420.1264.56e-082.27e-07
familyPeptostreptococcaceae0.1264.57e-082.27e-07
speciesCoprococcus_sp_ART55_1-0.1264.79e-082.36e-07
speciesMitsuokella_unclassified-0.1265.11e-082.49e-07
familyActinomycetaceae0.1255.42e-082.61e-07
speciesClostridium_bartlettii0.1247.58e-083.61e-07
speciesBifidobacterium_longum0.1192.31e-071.09e-06
speciesStreptococcus_australis0.1192.63e-071.23e-06
genusClostridiaceae_noname0.1192.69e-071.23e-06
speciesClostridiaceae_bacterium_JC1180.1192.69e-071.23e-06
genusPeptostreptococcaceae_noname0.1182.86e-071.3e-06
classErysipelotrichia0.1183.2e-071.41e-06
orderErysipelotrichales0.1183.2e-071.41e-06
familyErysipelotrichaceae0.1183.2e-071.41e-06
speciesStreptococcus_parasanguinis0.1183.47e-071.52e-06
genusButyrivibrio-0.1174.32e-071.84e-06
orderBifidobacteriales0.1174.33e-071.84e-06
familyBifidobacteriaceae0.1174.33e-071.84e-06
genusBifidobacterium0.1156.08e-072.56e-06
speciesStreptococcus_sanguinis0.1148e-073.34e-06
speciesEubacterium_limosum0.1148.16e-073.38e-06
speciesHoldemania_filiformis0.1121.14e-064.68e-06
speciesFusobacterium_ulcerans0.1121.29e-065.25e-06
phylumFirmicutes0.111.7e-066.86e-06
speciesLachnospiraceae_bacterium_1_1_57FAA0.111.81e-067.24e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.111.94e-067.69e-06
phylumEuryarchaeota-0.1082.87e-061.13e-05
genusOxalobacter-0.1073.3e-061.28e-05
speciesOxalobacter_formigenes-0.1073.3e-061.28e-05
speciesMethanobrevibacter_smithii-0.1073.61e-061.39e-05
classMethanobacteria-0.1073.76e-061.41e-05
orderMethanobacteriales-0.1073.76e-061.41e-05
familyMethanobacteriaceae-0.1073.76e-061.41e-05
genusMethanobrevibacter-0.1073.87e-061.44e-05
speciesMitsuokella_multacida-0.1054.9e-061.81e-05
speciesRuminococcus_champanellensis-0.1055.22e-061.91e-05
familyOxalobacteraceae-0.1055.59e-062.03e-05
speciesBacteroides_coprophilus-0.1046.12e-062.21e-05
speciesPropionibacterium_freudenreichii0.1046.81e-062.44e-05
speciesAlistipes_putredinis-0.1038.03e-062.85e-05
orderActinomycetales0.1029.44e-063.33e-05
speciesClostridium_leptum0.1011.1e-053.85e-05
genusBarnesiella-0.11.63e-055.62e-05
speciesBarnesiella_intestinihominis-0.11.63e-055.62e-05
speciesEubacterium_biforme-0.0991.83e-056.26e-05
speciesErysipelotrichaceae_bacterium_3_1_530.0972.63e-058.93e-05
genusBilophila0.0972.77e-059.34e-05
speciesBilophila_unclassified0.0972.81e-059.41e-05
speciesLactobacillus_ruminis-0.0962.97e-059.83e-05
genusAdlercreutzia0.0963e-059.83e-05
speciesAdlercreutzia_equolifaciens0.0963e-059.83e-05
genusPropionibacterium0.0953.63e-050.000118
speciesEubacterium_siraeum-0.0953.91e-050.000126
speciesDesulfovibrio_piger-0.0944.32e-050.000139
speciesLachnospiraceae_bacterium_7_1_58FAA0.0936.05e-050.000193
speciesAlistipes_finegoldii-0.0927.4e-050.000234
familyRikenellaceae-0.0917.54e-050.000236
genusAlistipes-0.0917.54e-050.000236
speciesHoldemania_sp_AP20.0917.67e-050.000238
speciesParaprevotella_clara-0.0918.56e-050.000264
speciesLachnospiraceae_bacterium_2_1_46FAA0.0880.0001390.000426
speciesParaprevotella_xylaniphila-0.0880.0001430.000435
speciesCollinsella_intestinalis0.0870.0001590.000478
speciesHaemophilus_parainfluenzae-0.0870.0001590.000478
genusHaemophilus-0.0870.0001610.000481
speciesParaprevotella_unclassified-0.0860.0001860.000552
genusParaprevotella-0.0850.0002210.000652
orderPasteurellales-0.0850.0002440.000709
familyPasteurellaceae-0.0850.0002440.000709
speciesPrevotella_stercorea-0.0850.0002450.000709
genusErysipelotrichaceae_noname0.0840.0002560.000737
speciesSutterella_wadsworthensis-0.0840.0002630.000752
speciesMethanobrevibacter_unclassified-0.0840.000280.000796
speciesBacteroides_fragilis0.0830.0003280.000927
familySutterellaceae-0.0810.000430.00121
speciesCoprococcus_eutactus-0.0810.0004510.00126
genusCoprobacter-0.0790.0005840.00161
speciesCoprobacter_fastidiosus-0.0790.0005840.00161
speciesClostridium_sp_KLE_17550.0790.000620.0017
speciesParabacteroides_merdae-0.0790.0006290.00172
speciesBifidobacterium_pseudocatenulatum0.0790.0006470.00176
familyRuminococcaceae0.0780.0006820.00184
speciesCoriobacteriaceae_bacterium_phI0.0780.0007440.002
speciesRoseburia_hominis-0.0780.000780.00208
speciesStreptococcus_mutans0.0770.0007980.00212
orderBurkholderiales-0.0770.0008170.00215
genusPhascolarctobacterium-0.0770.0008450.0022
speciesPhascolarctobacterium_succinatutens-0.0770.0008450.0022
speciesEscherichia_coli0.0770.0008710.00226
genusCoriobacteriaceae_noname0.0770.0009270.00239
genusPeptostreptococcus0.0760.0009630.00247
speciesSubdoligranulum_sp_4_3_54A2FAA0.0760.001020.0026
genusSutterella-0.0750.001170.00295
speciesRuminococcus_bromii0.0750.001170.00295
classBetaproteobacteria-0.0750.001210.00304
speciesHoldemania_unclassified0.0750.001240.00308
speciesEubacterium_eligens-0.0750.001240.00308
speciesLactobacillus_delbrueckii0.0740.001430.00353
genusEscherichia0.0730.001670.00411
speciesStreptococcus_gordonii0.0730.001680.00411
genusSiphoviridae_noname0.0720.001730.00421
speciesAnaerotruncus_unclassified-0.0720.001910.00462
speciesStreptococcus_mitis_oralis_pneumoniae0.0710.002010.00484
speciesAlistipes_sp_HGB5-0.0710.002020.00484
speciesBilophila_wadsworthia0.0710.002160.00515
speciesStreptococcus_vestibularis0.070.002630.00624
genusDesulfovibrio-0.0690.002670.0063
familyPorphyromonadaceae-0.0690.002870.00674
speciesFusobacterium_varium0.0680.003280.00766
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0670.003510.00816
familyEnterococcaceae0.0670.003690.00854
genusEnterococcus0.0670.003930.00905
classDeltaproteobacteria0.0660.004390.00996
orderDesulfovibrionales0.0660.004390.00996
familyDesulfovibrionaceae0.0660.004390.00996
familyBacteroidaceae0.0640.005420.0122
genusBacteroides0.0640.005420.0122
familyOscillospiraceae0.0640.00560.0125
genusOscillibacter0.0640.00560.0125
familyPropionibacteriaceae0.0640.00590.0131
genusButyricicoccus0.0630.006550.0144
speciesButyricicoccus_pullicaecorum0.0630.006550.0144
speciesBifidobacterium_animalis0.0630.00680.0149
speciesSlackia_piriformis0.0610.007820.017
speciesStreptococcus_thermophilus0.0610.008310.018
speciesRuminococcus_callidus-0.0610.008480.0183
genusPeptoniphilus0.060.00960.0206
speciesPeptostreptococcus_stomatis0.060.009820.021
speciesDialister_succinatiphilus-0.0590.01040.0221
speciesCoprobacillus_sp_29_10.0590.01120.0237
speciesStreptococcus_phage_Sfi210.0590.01130.0238
genusCollinsella0.0580.01220.0256
familyStaphylococcaceae0.0570.01340.028
speciesOscillibacter_unclassified0.0570.01350.0281
speciesStreptococcus_anginosus0.0560.01560.0323
speciesClostridium_sp_L2_50-0.0560.01620.0334
genusLambdalikevirus0.0560.01630.0335
orderEnterobacteriales0.0550.01790.0364
familyEnterobacteriaceae0.0550.01790.0364
genusParasutterella-0.0550.01810.0365
speciesParasutterella_excrementihominis-0.0550.01810.0365
speciesDialister_invisus0.0530.0210.0422
genusStaphylococcus0.0530.02290.0458
familyAcidaminococcaceae-0.0530.02320.0462
speciesClostridium_spiroforme0.0520.02360.0468
speciesCollinsella_unclassified0.0520.02460.0486
familyMyoviridae0.0520.02470.0486
genusLeuconostoc0.0520.02490.0488
speciesParabacteroides_sp_D13-0.0520.02520.0492
speciesDorea_longicatena0.0520.02580.0501
speciesCoprococcus_comes0.0510.02640.0511
genusLactococcus0.0510.02680.0516
speciesEnterococcus_faecalis0.0510.0270.0518
phylumSynergistetes-0.0510.02880.0544
classSynergistia-0.0510.02880.0544
orderSynergistales-0.0510.02880.0544
familySynergistaceae-0.0510.02880.0544
genusSlackia0.050.02940.0553
speciesSutterella_parvirubra0.050.0310.0581
orderCaudovirales0.0490.03240.0604
speciesBacteroides_ovatus0.0490.03260.0606
genusRuminococcaceae_noname0.0490.03330.0614
speciesRuminococcaceae_bacterium_D160.0490.03330.0614
speciesLactobacillus_acidophilus0.0480.03960.0727
familyClostridiales_Family_XI_Incertae_Sedis0.0470.04090.0748
genusRothia0.0470.04280.078
speciesEnterobacteria_phage_HK5440.0470.04340.0788
familyMicrococcaceae0.0460.04530.0819
speciesGemella_morbillorum0.0450.05160.093
speciesEnterococcus_faecium0.0450.05270.0946
genusMyoviridae_noname0.0450.05320.0951
speciesBacteroides_faecis-0.0450.05350.0953
genusPyramidobacter-0.0440.05470.0967
speciesPyramidobacter_piscolens-0.0440.05470.0967
familyLeuconostocaceae0.0440.05530.0974
speciesLactobacillus_casei_paracasei0.0440.05620.0986
genusButyricimonas-0.0440.05740.1
speciesButyricimonas_synergistica-0.0440.05740.1
genusSuccinatimonas-0.0430.06060.105
speciesSuccinatimonas_hippei-0.0430.06060.105
familyPodoviridae0.0430.06070.105
speciesRothia_mucilaginosa0.0430.0620.106
genusMethanosphaera-0.0430.06260.107
speciesMethanosphaera_stadtmanae-0.0430.06260.107
genusRoseburia0.0430.06410.109
familySuccinivibrionaceae-0.0430.06450.109
speciesBacteroides_pectinophilus-0.0420.06630.112
speciesStreptococcus_pasteurianus0.0420.07020.118
familyLactobacillaceae0.0410.07940.133
speciesBacteroides_plebeius-0.040.08280.138
speciesLactococcus_phage_jm20.040.08470.141
speciesVeillonella_parvula0.040.08520.141
speciesProteus_mirabilis0.040.08770.145
phylumVerrucomicrobia-0.0380.1010.163
classVerrucomicrobiae-0.0380.1010.163
orderVerrucomicrobiales-0.0380.1010.163
familyVerrucomicrobiaceae-0.0380.1010.163
genusAkkermansia-0.0380.1010.163
speciesAkkermansia_muciniphila-0.0380.1010.163
speciesBacteroides_sp_3_1_190.0380.1020.164
phylumViruses_noname0.0370.1070.171
classViruses_noname0.0370.1070.171
genusBurkholderiales_noname-0.0370.1090.173
speciesBurkholderiales_bacterium_1_1_47-0.0370.1090.173
speciesBacteroides_fluxus-0.0370.1130.178
speciesBacteroides_oleiciplenus0.0370.1130.178
speciesDesulfovibrio_desulfuricans-0.0370.1130.178
familyBurkholderiales_noname-0.0360.120.188
speciesLactococcus_lactis0.0360.120.188
speciesLactococcus_phage_bIL670.0360.1210.188
speciesOscillibacter_sp_KLE_17450.0360.1210.188
speciesLactobacillus_rhamnosus0.0360.1250.193
speciesMegasphaera_elsdenii-0.0350.1250.193
speciesOscillibacter_sp_KLE_17280.0340.1390.214
genusParvimonas0.0340.1450.221
speciesParvimonas_unclassified0.0340.1450.221
speciesBacteroides_caccae-0.0340.1460.222
speciesBacteroides_vulgatus-0.0330.1480.225
classGammaproteobacteria0.0330.1490.225
familySiphoviridae0.0330.1490.225
genusEubacterium0.0330.150.225
familyEubacteriaceae0.0330.1530.229
speciesBifidobacterium_adolescentis-0.0330.1530.229
speciesBacteroides_massiliensis0.0330.1570.234
speciesAlistipes_indistinctus-0.0330.1580.235
speciesSubdoligranulum_unclassified-0.0320.1610.238
speciesBacteroides_thetaiotaomicron0.0320.1670.246
genusLactobacillus0.0320.1680.247
speciesOlsenella_unclassified-0.0320.1710.25
speciesAcidaminococcus_intestini0.0320.1710.25
speciesLactococcus_garvieae0.0320.1720.251
speciesParabacteroides_distasonis0.0310.1780.259
speciesBifidobacterium_breve0.0310.1790.259
genusVeillonella0.0310.1830.264
speciesParabacteroides_johnsonii0.0310.1840.265
speciesParabacteroides_unclassified0.030.1870.268
speciesClostridium_perfringens-0.030.190.272
speciesLactobacillus_plantarum0.030.1930.275
speciesPrevotella_bivia0.0290.2030.289
speciesEggerthella_sp_1_3_56FAA0.0290.2070.293
speciesBacteroides_stercoris0.0290.2090.295
speciesEscherichia_unclassified0.0290.210.296
genusAnaerotruncus0.0290.2170.305
genusProteus0.0280.2310.323
speciesRuminococcus_sp_JC3040.0280.2320.323
genusMorganella0.0280.2330.323
speciesMorganella_morganii0.0280.2330.323
speciesCoprobacillus_sp_D60.0270.240.332
speciesAlistipes_onderdonkii-0.0270.2420.334
speciesWeissella_confusa-0.0270.2430.334
speciesMegamonas_rupellensis0.0270.2440.335
genusMegamonas0.0260.2530.345
speciesPeptostreptococcus_anaerobius0.0260.2530.345
speciesMegamonas_unclassified0.0260.2540.345
genusAcidaminococcaceae_unclassified-0.0260.2550.346
speciesParabacteroides_sp_20_3-0.0260.2630.356
genusSubdoligranulum-0.0260.2690.363
genusSutterellaceae_unclassified-0.0250.2710.364
orderAeromonadales-0.0250.280.375
speciesCollinsella_tanakaei0.0250.2860.382
speciesWeissella_cibaria0.0240.2960.395
genusDialister0.0240.2970.395
speciesKlebsiella_unclassified0.0240.3040.402
speciesCitrobacter_freundii0.0240.3040.402
classNegativicutes-0.0230.3140.413
orderSelenomonadales-0.0230.3140.413
speciesMegamonas_funiformis-0.0230.3150.413
speciesBacteroides_nordii-0.0230.3290.43
speciesBacteroides_salyersiae0.0220.3320.433
genusParabacteroides-0.0220.3380.439
speciesRoseburia_intestinalis0.0220.340.441
speciesEubacterium_ventriosum0.0210.3640.471
speciesLactobacillus_crispatus0.0210.3660.472
speciesOdoribacter_laneus0.0210.3740.481
genusAggregatibacter-0.020.3790.486
genusTunalikevirus-0.020.3810.487
speciesBacteroides_uniformis0.020.3840.49
speciesPorphyromonas_uenonis0.020.3850.49
speciesBifidobacterium_angulatum-0.020.3940.5
speciesBacteroides_clarus0.0190.4080.516
speciesLactococcus_phage_936_sensu_lato-0.0190.4090.516
speciesCampylobacter_concisus0.0190.4110.517
speciesBacteroides_finegoldii-0.0190.4160.522
orderPseudomonadales0.0190.4190.525
genusTuricibacter0.0190.4210.526
speciesLactobacillus_vaginalis-0.0180.4310.537
speciesBacteroides_intestinalis-0.0180.4320.537
speciesBifidobacterium_catenulatum0.0180.4360.54
speciesPrevotella_buccae-0.0170.4510.557
familyViruses_noname-0.0170.4550.559
genusViruses_noname-0.0170.4550.559
speciesLactobacillus_sanfranciscensis-0.0170.4630.568
speciesStreptococcus_lutetiensis0.0170.4670.571
speciesCollinsella_aerofaciens0.0170.4680.571
genusCitrobacter0.0170.470.572
genusAcidaminococcus0.0170.4720.573
speciesVeillonella_unclassified0.0160.4850.587
speciesDorea_unclassified-0.0160.4950.598
speciesLactobacillus_mucosae-0.0150.5180.624
speciesLachnospiraceae_bacterium_3_1_46FAA0.0150.520.624
genusFaecalibacterium0.0150.5220.624
speciesFaecalibacterium_prausnitzii0.0150.5220.624
speciesBifidobacterium_dentium0.0150.5240.624
speciesBacteroides_sp_2_1_22-0.0150.5250.624
genusKlebsiella0.0150.5260.624
speciesRuminococcus_lactaris-0.0140.5330.631
genusWeissella0.0140.5360.632
speciesHaemophilus_sputorum0.0140.5420.637
speciesBacteroides_xylanisolvens-0.0140.5430.637
speciesEnterobacter_aerogenes-0.0140.5440.637
orderViruses_noname-0.0140.5460.638
speciesLactococcus_phage_phi70.0140.5480.639
speciesButyrivibrio_unclassified0.0140.5510.641
speciesStreptococcus_infantarius0.0140.5550.644
speciesEubacterium_cylindroides0.0140.5590.646
speciesTuricibacter_unclassified0.0130.560.646
speciesAcidaminococcus_fermentans-0.0130.5620.647
speciesLactococcus_phage_P6800.0130.5670.651
speciesKlebsiella_phage_KP36-0.0130.5690.652
speciesAlistipes_sp_AP110.0120.5890.673
genusCoprococcus-0.0120.5960.678
genusPseudoflavonifractor-0.0120.5980.678
speciesPseudoflavonifractor_capillosus-0.0120.5980.678
speciesMegasphaera_micronuciformis0.0120.60.679
speciesBacteroides_coprocola-0.0120.6040.682
speciesMegasphaera_unclassified-0.0120.6080.685
familyVeillonellaceae0.0110.6210.698
speciesTuricibacter_sanguinis0.0110.6280.704
speciesLactobacillus_oris-0.0110.630.705
genusOlsenella-0.0110.6320.705
speciesBacteroides_salanitronis0.0110.6440.717
speciesOdoribacter_unclassified0.0110.6470.719
speciesLactobacillus_gasseri-0.010.650.72
speciesHaemophilus_paraphrohaemolyticus0.010.6760.747
genusMegasphaera-0.010.6770.747
speciesLactobacillus_amylovorus0.0090.6840.753
speciesBifidobacterium_bifidum0.0090.6960.763
speciesFusobacterium_nucleatum0.0090.6970.763
speciesCitrobacter_unclassified0.0090.7110.777
speciesEubacterium_rectale-0.0080.720.785
speciesPeptostreptococcaceae_noname_unclassified0.0080.7230.786
genusPorphyromonas-0.0080.7320.794
speciesParabacteroides_goldsteinii-0.0080.7350.796
speciesLactobacillus_fermentum-0.0080.7390.798
speciesBacteroides_barnesiae-0.0080.7420.8
speciesAcidaminococcus_unclassified0.0070.7490.805
speciesVeillonella_atypica-0.0070.7560.811
speciesEnterobacter_cloacae0.0070.7620.816
speciesBacteroides_cellulosilyticus-0.0070.7720.824
speciesLactobacillus_salivarius0.0060.7960.846
speciesBacteroides_eggerthii-0.0060.7960.846
speciesLactobacillus_reuteri-0.0060.7990.847
classEpsilonproteobacteria-0.0060.810.855
orderCampylobacterales-0.0060.810.855
speciesC2likevirus_unclassified-0.0050.8140.858
genusEnterobacter0.0050.8160.858
speciesRoseburia_unclassified-0.0050.8230.863
speciesPorphyromonas_asaccharolytica-0.0050.8340.873
speciesAlistipes_unclassified0.0040.8460.883
speciesRoseburia_inulinivorans0.0040.8740.911
genusCampylobacter0.0030.8850.92
speciesKlebsiella_sp_MS_92_3-0.0030.8870.92
genusPantoea0.0030.8930.922
speciesPantoea_unclassified0.0030.8930.922
speciesAggregatibacter_segnis-0.0030.8980.925
genusC2likevirus-0.0030.90.925
speciesMegamonas_hypermegale-0.0030.9010.925
speciesBacteroides_sp_4_3_47FAA-0.0030.9110.932
familyCampylobacteraceae0.0030.9140.932
speciesKlebsiella_oxytoca0.0030.9140.932
speciesBacteroides_dorei-0.0020.9230.939
genusActinobacillus0.0020.9310.943
speciesActinobacillus_unclassified0.0020.9310.943
speciesBacteroides_sp_1_1_60.0020.9330.943
speciesVeillonella_dispar0.0010.950.958
speciesLeuconostoc_lactis0.0010.9750.981
phylumProteobacteria-0.0010.9770.981
speciesKlebsiella_pneumoniae0.00.9840.985
speciesCoprococcus_catus0.00.9850.985
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.01438482159730.01452707447160.1729189382771235940.844
Type II diabetesSweden53920.01462450680520.02271445938160.191365569144666222.5601
Ulcerative colitisSpain78660.01714314665390.01372540237750.2365028816371187539.1733
Liver cirrhosisChina1201140.01185888591770.01128758040130.5595473811452492983.7415
Crohns diseaseSpain17660.0128251758990.01372540237750.7054257066322668788.7348
ObesityDenmark1691230.009401538904580.008346482624020.8028609500942643186.9126
Rheumatoid arthritisChina127980.009186239591350.008844926044370.884224132752731491.0861
Colorectal cancerAustria64350.01325411397040.01149084164530.9096750828072736792.5937
Type II diabetesDenmark752770.006756925239620.009002513945050.9523028426882961497.0728
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382