MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-27 03:51:25 PST
Job id & description: 1659, test
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|Q39TV8|Q39TV8_GEOMG424610CompleteK03738COG2414unknownunknown96.6393.4830.63
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusPseudoflavonifractor0.3692.69e-616.35e-59
speciesPseudoflavonifractor_capillosus0.3692.69e-616.35e-59
speciesErysipelotrichaceae_bacterium_21_30.2932.12e-383.34e-36
genusRuminococcaceae_noname0.2561.84e-291.74e-27
speciesRuminococcaceae_bacterium_D160.2561.84e-291.74e-27
speciesAnaerotruncus_unclassified0.2554.51e-292.89e-27
speciesSubdoligranulum_unclassified0.2554.74e-292.89e-27
genusSubdoligranulum0.2554.89e-292.89e-27
speciesLachnospiraceae_bacterium_7_1_58FAA0.2391.01e-255.3e-24
speciesClostridium_leptum0.2381.4e-256.61e-24
speciesMethanobrevibacter_smithii0.2331.46e-246.26e-23
classMethanobacteria0.2291.07e-233.61e-22
orderMethanobacteriales0.2291.07e-233.61e-22
familyMethanobacteriaceae0.2291.07e-233.61e-22
genusMethanobrevibacter0.2272.92e-239.19e-22
phylumEuryarchaeota0.2231.79e-225.28e-21
genusAnaerotruncus0.2122.09e-205.8e-19
speciesEubacterium_siraeum0.214.03e-201.06e-18
speciesEubacterium_hallii0.1926.53e-171.62e-15
phylumVerrucomicrobia0.1821.85e-153.49e-14
classVerrucomicrobiae0.1821.85e-153.49e-14
orderVerrucomicrobiales0.1821.85e-153.49e-14
familyVerrucomicrobiaceae0.1821.85e-153.49e-14
genusAkkermansia0.1821.85e-153.49e-14
speciesAkkermansia_muciniphila0.1821.85e-153.49e-14
speciesOscillibacter_unclassified0.183.88e-157.04e-14
familyOscillospiraceae0.185.1e-158.6e-14
genusOscillibacter0.185.1e-158.6e-14
genusBarnesiella0.1795.68e-158.94e-14
speciesBarnesiella_intestinihominis0.1795.68e-158.94e-14
speciesBifidobacterium_adolescentis0.1752.33e-143.55e-13
genusButyrivibrio0.1752.63e-143.88e-13
genusCoprococcus0.171.31e-131.87e-12
familyRuminococcaceae0.1682.69e-133.73e-12
speciesLachnospiraceae_bacterium_3_1_46FAA0.1656.64e-138.95e-12
speciesDorea_longicatena0.1631.16e-121.52e-11
speciesButyrivibrio_unclassified0.1621.7e-122.17e-11
genusDorea0.1621.75e-122.17e-11
classClostridia0.1612.46e-122.9e-11
orderClostridiales0.1612.46e-122.9e-11
speciesCoprococcus_comes0.163.97e-124.57e-11
orderCoriobacteriales0.1577.93e-128.7e-11
familyCoriobacteriaceae0.1577.93e-128.7e-11
classGammaproteobacteria-0.1551.49e-111.6e-10
speciesDesulfovibrio_desulfuricans0.1551.64e-111.72e-10
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1551.8e-111.82e-10
genusCollinsella0.1551.81e-111.82e-10
familySiphoviridae0.1533.09e-113.04e-10
genusKlebsiella-0.1514.92e-114.74e-10
speciesMitsuokella_unclassified0.1515.64e-115.32e-10
speciesAlistipes_sp_AP110.1516.08e-115.63e-10
speciesKlebsiella_pneumoniae-0.157.78e-117.06e-10
speciesCollinsella_aerofaciens0.1499.29e-118.27e-10
genusDesulfovibrio0.1471.48e-101.29e-09
speciesAnaerostipes_hadrus0.1462.28e-101.96e-09
speciesCoprococcus_catus0.1452.74e-102.31e-09
phylumViruses_noname0.1452.93e-102.38e-09
classViruses_noname0.1452.93e-102.38e-09
genusMitsuokella0.1443.74e-102.99e-09
phylumFirmicutes0.1426.24e-104.91e-09
speciesEubacterium_ramulus0.141.11e-098.59e-09
genusC2likevirus0.141.25e-099.52e-09
speciesC2likevirus_unclassified0.1382.29e-091.72e-08
speciesEubacterium_cylindroides0.1372.59e-091.91e-08
genusCoprobacter0.1363.15e-092.25e-08
speciesCoprobacter_fastidiosus0.1363.15e-092.25e-08
genusRuminococcus0.1363.52e-092.45e-08
orderCaudovirales0.1363.53e-092.45e-08
familyBacteroidales_noname0.1354.56e-093.03e-08
genusBacteroidales_noname0.1354.56e-093.03e-08
speciesBacteroidales_bacterium_ph80.1354.56e-093.03e-08
phylumActinobacteria0.1354.91e-093.17e-08
classActinobacteria0.1354.91e-093.17e-08
genusHaemophilus-0.1345.83e-093.69e-08
speciesCoriobacteriaceae_bacterium_phI0.1345.87e-093.69e-08
speciesHaemophilus_parainfluenzae-0.1337.55e-094.69e-08
orderPasteurellales-0.1329.44e-095.68e-08
familyPasteurellaceae-0.1329.44e-095.68e-08
genusVeillonella-0.1329.5e-095.68e-08
speciesRuminococcus_obeum0.1329.69e-095.72e-08
genusCoriobacteriaceae_noname0.1321e-085.83e-08
phylumBacteroidetes-0.131.58e-088.88e-08
classBacteroidia-0.131.58e-088.88e-08
orderBacteroidales-0.131.58e-088.88e-08
speciesRuminococcus_bromii0.1292e-081.11e-07
phylumProteobacteria-0.1292.42e-081.33e-07
familyEubacteriaceae0.1264.07e-082.19e-07
genusEubacterium0.1264.08e-082.19e-07
speciesRuminococcus_gnavus-0.1256e-083.18e-07
genusAdlercreutzia0.1247.07e-083.65e-07
speciesAdlercreutzia_equolifaciens0.1247.07e-083.65e-07
speciesMethanobrevibacter_unclassified0.1247.23e-083.65e-07
orderEnterobacteriales-0.1247.26e-083.65e-07
familyEnterobacteriaceae-0.1247.26e-083.65e-07
genusSiphoviridae_noname0.1238.9e-084.42e-07
genusAnaerostipes0.1239.89e-084.86e-07
speciesClostridium_nexile-0.1211.54e-077.49e-07
speciesVeillonella_parvula-0.122.16e-071.04e-06
speciesVeillonella_unclassified-0.1192.29e-071.09e-06
phylumFusobacteria-0.1192.36e-071.09e-06
classFusobacteriia-0.1192.36e-071.09e-06
orderFusobacteriales-0.1192.36e-071.09e-06
speciesBlautia_hydrogenotrophica0.1183.39e-071.55e-06
speciesLactococcus_phage_P6800.1173.83e-071.74e-06
speciesAlistipes_senegalensis0.1173.9e-071.75e-06
speciesErysipelotrichaceae_bacterium_2_2_44A0.1174.16e-071.85e-06
speciesSutterella_wadsworthensis0.1164.84e-072.14e-06
genusAcidaminococcaceae_unclassified0.1155.73e-072.5e-06
familyFusobacteriaceae-0.1156.1e-072.64e-06
speciesAlistipes_indistinctus0.1147.37e-073.16e-06
speciesLactococcus_phage_phi70.1138.9e-073.78e-06
genusErysipelotrichaceae_noname0.1139e-073.79e-06
genusFusobacterium-0.1139.37e-073.91e-06
genusBifidobacterium0.1131.06e-064.39e-06
orderBifidobacteriales0.1121.24e-065.05e-06
familyBifidobacteriaceae0.1121.24e-065.05e-06
speciesStreptococcus_thermophilus0.1121.33e-065.37e-06
speciesRuminococcus_torques0.111.68e-066.72e-06
speciesOlsenella_unclassified0.112.03e-068.05e-06
speciesMegamonas_unclassified-0.1092.17e-068.54e-06
genusMegamonas-0.1092.23e-068.7e-06
speciesLactococcus_lactis0.1092.4e-069.29e-06
speciesBacteroides_nordii-0.1082.62e-061e-05
speciesBacteroides_plebeius-0.1082.64e-061e-05
speciesCoprococcus_sp_ART55_10.1082.74e-061.03e-05
genusSutterella0.1082.87e-061.08e-05
speciesBacteroides_stercoris-0.1073.85e-061.43e-05
speciesBacteroides_salanitronis0.1064.41e-061.63e-05
speciesBifidobacterium_longum0.1054.92e-061.8e-05
genusEscherichia-0.1055.15e-061.87e-05
speciesPrevotella_stercorea-0.1029.11e-063.28e-05
speciesEscherichia_coli-0.1029.23e-063.3e-05
speciesEubacterium_ventriosum0.1029.59e-063.4e-05
familyBacteroidaceae-0.1011.2e-054.16e-05
genusBacteroides-0.1011.2e-054.16e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1011.2e-054.16e-05
speciesFusobacterium_mortiferum-0.1011.33e-054.58e-05
classErysipelotrichia0.11.38e-054.65e-05
orderErysipelotrichales0.11.38e-054.65e-05
familyErysipelotrichaceae0.11.38e-054.65e-05
speciesAlistipes_shahii0.11.43e-054.79e-05
speciesRuminococcus_sp_5_1_39BFAA0.11.53e-055.09e-05
genusMegasphaera-0.0991.63e-055.38e-05
speciesAlistipes_onderdonkii0.0982.12e-056.95e-05
genusPrevotella-0.0982.15e-057e-05
familyPorphyromonadaceae0.0972.41e-057.79e-05
familyClostridiales_noname0.0972.67e-058.57e-05
speciesBifidobacterium_pseudocatenulatum-0.0972.74e-058.71e-05
speciesRoseburia_hominis0.0972.75e-058.71e-05
genusGordonibacter0.0963.02e-059.44e-05
speciesGordonibacter_pamelaeae0.0963.02e-059.44e-05
speciesMegasphaera_micronuciformis-0.0963.12e-059.69e-05
genusOlsenella0.0963.2e-059.87e-05
speciesEubacterium_rectale0.0963.26e-059.99e-05
genusOdoribacter0.0953.63e-050.000111
speciesDorea_formicigenerans0.0953.98e-050.00012
genusButyricicoccus0.0935.24e-050.000157
speciesButyricicoccus_pullicaecorum0.0935.24e-050.000157
speciesRoseburia_unclassified0.0935.96e-050.000177
speciesPrevotella_copri-0.0926.36e-050.000188
speciesRuminococcus_lactaris0.0917.73e-050.000227
speciesBacteroides_uniformis0.0890.000110.00032
speciesVeillonella_atypica-0.0890.0001120.000324
speciesMegamonas_funiformis-0.0880.0001430.000412
speciesVeillonella_dispar-0.0860.0001920.000549
genusLactococcus0.0860.0001980.000563
genusEnterobacter-0.0860.0002130.000602
speciesCoprobacillus_unclassified-0.0850.0002210.000621
speciesBacteroides_finegoldii-0.0830.0003010.000841
familyRikenellaceae0.0830.0003320.000916
genusAlistipes0.0830.0003320.000916
speciesFusobacterium_ulcerans-0.0810.0004690.00129
speciesOdoribacter_splanchnicus0.0810.0004720.00129
speciesBacteroides_coprocola-0.080.0004950.00134
speciesEnterobacter_cloacae-0.080.0005460.00147
speciesButyrivibrio_crossotus0.0790.0006650.00178
speciesFusobacterium_varium-0.0780.0007050.00188
speciesHoldemania_filiformis0.0780.0007620.00202
speciesDialister_invisus0.0780.0007670.00202
speciesBacteroides_thetaiotaomicron-0.0780.0007830.00205
speciesOscillibacter_sp_KLE_17450.0770.0008160.00213
familyOxalobacteraceae0.0770.000920.00239
familyLachnospiraceae0.0760.0009660.00249
speciesEubacterium_limosum0.0760.001020.00262
speciesOdoribacter_unclassified0.0760.001040.00265
genusOxalobacter0.0750.001190.003
speciesOxalobacter_formigenes0.0750.001190.003
speciesAlistipes_sp_HGB50.0750.001210.00304
speciesSubdoligranulum_sp_4_3_54A2FAA0.0750.001250.00312
speciesBacteroides_ovatus-0.0740.001330.0033
speciesMegamonas_hypermegale-0.0740.001370.00339
speciesTuricibacter_sanguinis0.0740.001420.00349
speciesDesulfovibrio_piger0.0730.001610.00394
genusCoprobacillus-0.0710.002170.00528
orderViruses_noname0.070.002530.00612
speciesBacteroides_oleiciplenus-0.0690.00270.0065
speciesOdoribacter_laneus0.0680.003080.00738
speciesPrevotella_buccae-0.0680.003140.00749
genusDialister0.0680.003190.00757
genusTuricibacter0.0680.003470.00819
speciesHaemophilus_sputorum-0.0670.003810.00895
speciesBifidobacterium_bifidum0.0660.004070.00951
speciesLactococcus_phage_jm20.0660.004110.00956
genusWeissella-0.0660.004150.0096
speciesMegamonas_rupellensis-0.0660.00420.00967
familyAcidaminococcaceae0.0650.004830.011
genusActinobacillus-0.0650.004860.011
speciesActinobacillus_unclassified-0.0650.004860.011
speciesBacteroides_xylanisolvens-0.0640.005320.012
speciesCampylobacter_concisus-0.0640.005360.012
genusLachnospiraceae_noname0.0640.005420.0121
speciesCitrobacter_unclassified-0.0640.00560.0125
speciesLactobacillus_acidophilus0.0630.006280.0139
genusBlautia0.0630.006430.0142
speciesCitrobacter_freundii-0.0630.006510.0143
speciesStreptococcus_mitis_oralis_pneumoniae-0.0620.007240.0158
genusActinomyces0.0620.007450.0162
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0620.007510.0163
speciesStreptococcus_infantarius-0.0610.007960.0172
genusHoldemania0.0610.008330.0179
speciesLactobacillus_sanfranciscensis-0.0610.008570.0183
speciesTuricibacter_unclassified0.0610.008640.0184
familyPrevotellaceae-0.060.00940.0199
speciesClostridium_perfringens-0.060.009550.0201
speciesAcidaminococcus_unclassified0.060.009580.0201
familyCampylobacteraceae-0.060.009780.0204
speciesMegasphaera_unclassified-0.060.009790.0204
classDeltaproteobacteria0.0590.01050.0215
orderDesulfovibrionales0.0590.01050.0215
familyDesulfovibrionaceae0.0590.01050.0215
speciesRuminococcus_champanellensis0.0590.01080.0221
familyActinomycetaceae0.0590.01090.0222
genusCampylobacter-0.0590.0110.0223
classEpsilonproteobacteria-0.0580.01150.0231
orderCampylobacterales-0.0580.01150.0231
speciesStreptococcus_australis-0.0580.0120.024
genusCitrobacter-0.0580.01260.0251
speciesEnterobacter_aerogenes-0.0570.01380.0274
speciesWeissella_confusa-0.0570.0140.0276
familyStaphylococcaceae0.0560.01560.0307
speciesAlistipes_putredinis0.0560.0160.0313
speciesParabacteroides_merdae0.0550.01660.0324
speciesBacteroides_fragilis-0.0550.0170.033
speciesWeissella_cibaria-0.0550.01780.0344
speciesClostridium_citroniae-0.0550.01810.0349
speciesLactobacillus_salivarius-0.0550.01830.0351
familyBacillales_noname-0.0540.02020.0384
genusGemella-0.0540.02020.0384
speciesPorphyromonas_asaccharolytica0.0530.0230.0436
speciesBilophila_wadsworthia0.0520.02410.0455
speciesHoldemania_unclassified0.0520.02430.0457
speciesFusobacterium_nucleatum-0.0520.02450.0459
speciesStreptococcus_pasteurianus-0.0520.02550.0476
speciesEscherichia_unclassified-0.0520.02590.0481
speciesClostridium_symbiosum-0.0510.02720.0503
familyVeillonellaceae-0.0510.02870.0529
speciesLeuconostoc_lactis-0.050.02980.0547
genusMethanosphaera0.050.03070.0559
speciesMethanosphaera_stadtmanae0.050.03070.0559
speciesLachnospiraceae_bacterium_5_1_63FAA0.050.03080.0559
speciesRoseburia_inulinivorans-0.050.03110.0562
genusPantoea-0.0490.03270.0587
speciesPantoea_unclassified-0.0490.03270.0587
speciesClostridium_spiroforme0.0490.03390.0606
speciesHaemophilus_paraphrohaemolyticus-0.0480.03870.0689
speciesBacteroides_salyersiae-0.0480.0390.0692
speciesBifidobacterium_catenulatum0.0480.03980.0704
speciesCoprococcus_eutactus0.0470.04040.0712
speciesBacteroides_massiliensis-0.0450.04970.0872
genusAggregatibacter-0.0450.05210.0911
speciesBacteroides_dorei0.0450.05350.0932
genusPyramidobacter-0.0450.05420.0937
speciesPyramidobacter_piscolens-0.0450.05420.0937
speciesRuminococcus_sp_JC304-0.0440.05480.0944
familyPeptostreptococcaceae0.0440.05540.0951
speciesBifidobacterium_animalis0.0440.05680.0971
speciesMegasphaera_elsdenii-0.0440.05870.1
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0430.06170.105
speciesClostridium_sp_KLE_1755-0.0430.06310.106
phylumSynergistetes-0.0430.06370.106
classSynergistia-0.0430.06370.106
orderSynergistales-0.0430.06370.106
familySynergistaceae-0.0430.06370.106
genusStaphylococcus0.0420.06750.112
speciesParaprevotella_xylaniphila0.0420.06810.113
genusPeptostreptococcaceae_noname0.0420.07040.116
speciesBacteroides_vulgatus-0.0420.07110.117
speciesLactobacillus_mucosae-0.0410.07340.12
speciesLactococcus_phage_936_sensu_lato0.0410.0750.122
speciesEubacterium_biforme0.0410.07520.122
speciesEggerthella_unclassified-0.0410.07660.124
speciesClostridium_ramosum-0.0410.07690.124
speciesRuminococcus_callidus0.0410.07840.126
speciesAcidaminococcus_fermentans-0.0410.07910.127
speciesStreptococcus_anginosus-0.040.080.128
speciesBacteroides_sp_3_1_19-0.040.08080.129
familyPodoviridae0.040.08530.136
speciesStreptococcus_mutans0.040.08560.136
speciesAggregatibacter_segnis-0.040.08670.137
speciesLactobacillus_rhamnosus0.0390.09010.142
speciesClostridium_bartlettii0.0390.09170.144
speciesCollinsella_unclassified0.0390.09570.149
speciesAlistipes_finegoldii0.0390.09570.149
genusSuccinatimonas0.0380.1010.156
speciesSuccinatimonas_hippei0.0380.1010.156
speciesPeptostreptococcus_anaerobius0.0380.1040.16
genusPorphyromonas0.0370.1120.172
speciesSutterella_parvirubra-0.0370.1120.172
speciesCoprobacillus_sp_D60.0360.1160.177
familySuccinivibrionaceae0.0360.1170.178
genusBilophila0.0360.1180.178
speciesPeptostreptococcaceae_noname_unclassified0.0360.1180.178
speciesStreptococcus_parasanguinis0.0360.1180.178
speciesAnaerostipes_unclassified-0.0360.1190.179
familyPropionibacteriaceae0.0360.120.18
genusFaecalibacterium-0.0360.1220.182
speciesFaecalibacterium_prausnitzii-0.0360.1220.182
speciesLactobacillus_crispatus-0.0350.1270.189
speciesLactobacillus_casei_paracasei0.0350.1290.191
speciesBacteroides_sp_1_1_6-0.0350.130.192
speciesPorphyromonas_uenonis0.0340.1440.212
genusEggerthella-0.0340.1460.214
familyBurkholderiales_noname-0.0340.1470.215
orderActinomycetales0.0330.1510.22
speciesBilophila_unclassified0.0330.1580.229
genusLambdalikevirus0.0330.160.231
speciesBacteroides_clarus0.0330.160.231
speciesLactobacillus_ruminis0.0320.1630.235
genusBurkholderiales_noname-0.0320.1640.235
speciesBurkholderiales_bacterium_1_1_47-0.0320.1640.235
speciesBacteroides_pectinophilus0.0320.1670.238
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0320.170.242
speciesBacteroides_barnesiae0.0310.1760.249
speciesStreptococcus_lutetiensis-0.0310.180.254
speciesKlebsiella_oxytoca-0.0310.180.254
speciesParabacteroides_distasonis0.0310.1860.261
speciesKlebsiella_unclassified-0.030.1960.275
orderBacillales-0.030.1980.276
genusParasutterella-0.030.20.278
speciesParasutterella_excrementihominis-0.030.20.278
genusParvimonas0.0290.2020.28
speciesParvimonas_unclassified0.0290.2050.283
speciesRothia_mucilaginosa-0.0290.2070.285
familyLactobacillaceae-0.0290.2080.285
genusLactobacillus-0.0290.210.287
speciesParaprevotella_unclassified0.0290.2160.295
speciesLactobacillus_delbrueckii0.0290.2170.295
familyMyoviridae-0.0280.220.298
speciesAcidaminococcus_intestini-0.0280.220.298
speciesClostridium_bolteae-0.0280.2220.299
speciesStreptococcus_sanguinis-0.0280.2240.301
genusParaprevotella0.0280.2270.304
speciesBifidobacterium_angulatum0.0270.2420.323
genusMorganella-0.0270.2430.323
speciesMorganella_morganii-0.0270.2430.323
speciesPropionibacterium_freudenreichii0.0270.2470.327
speciesClostridium_asparagiforme0.0270.2470.327
speciesRoseburia_intestinalis0.0270.2510.331
speciesHoldemania_sp_AP2-0.0260.2520.331
speciesAnaerotruncus_colihominis0.0260.2540.333
speciesDialister_succinatiphilus-0.0260.2560.335
speciesAlistipes_unclassified0.0260.2570.335
speciesLactococcus_garvieae-0.0260.260.338
speciesClostridium_sp_L2_500.0260.2610.338
genusLeuconostoc0.0260.2640.341
orderAeromonadales0.0260.2650.342
familyMicrococcaceae-0.0260.2660.342
genusRothia-0.0260.2680.344
genusParabacteroides0.0260.270.344
speciesBacteroides_cellulosilyticus0.0260.270.344
speciesParaprevotella_clara0.0250.2710.345
genusCatenibacterium0.0250.2730.345
speciesCatenibacterium_mitsuokai0.0250.2730.345
speciesEubacterium_dolichum0.0250.2870.362
classNegativicutes-0.0250.2880.362
orderSelenomonadales-0.0250.2880.362
genusRoseburia-0.0240.2960.371
speciesBacteroides_intestinalis-0.0230.3180.397
speciesPrevotella_bivia-0.0230.320.399
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0220.3310.411
speciesLachnospiraceae_bacterium_1_4_56FAA0.0220.3370.417
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0220.3490.431
speciesDorea_unclassified0.0210.3630.447
speciesStreptococcus_vestibularis0.0210.3660.45
speciesBacteroides_caccae-0.0210.3740.459
speciesLactobacillus_gasseri0.020.3760.46
familyViruses_noname0.0190.4110.5
genusViruses_noname0.0190.4110.5
genusSolobacterium0.0190.4190.507
speciesSolobacterium_moorei0.0190.4190.507
speciesLactobacillus_oris-0.0190.420.507
genusPropionibacterium0.0180.4250.512
speciesClostridium_sp_ATCC_BAA_442-0.0180.440.528
familyLeuconostocaceae-0.0170.4510.54
speciesEggerthella_sp_1_3_56FAA-0.0170.4540.542
genusSlackia0.0170.4550.542
speciesCollinsella_tanakaei-0.0160.4790.569
speciesClostridium_hathewayi0.0160.4840.574
speciesStreptococcus_salivarius-0.0160.4890.578
speciesKlebsiella_sp_MS_92_3-0.0160.490.578
speciesParabacteroides_johnsonii-0.0160.4920.579
speciesSlackia_piriformis0.0160.5020.589
speciesLactobacillus_plantarum-0.0150.5050.591
speciesEggerthella_lenta0.0150.5130.599
speciesProteus_mirabilis0.0150.5180.604
speciesLachnospiraceae_bacterium_8_1_57FAA0.0140.5310.617
genusMyoviridae_noname-0.0140.5380.624
speciesBacteroides_coprophilus-0.0140.5480.634
speciesBlautia_producta-0.0140.5510.636
speciesLactobacillus_amylovorus-0.0140.5530.637
speciesStreptococcus_gordonii-0.0130.5770.663
speciesClostridiales_bacterium_1_7_47FAA-0.0120.5960.683
speciesParabacteroides_unclassified-0.0120.5990.685
genusButyricimonas0.0120.6160.701
speciesButyricimonas_synergistica0.0120.6160.701
familySutterellaceae0.0110.6210.705
orderPseudomonadales-0.0110.6260.709
genusSutterellaceae_unclassified0.0110.6390.722
speciesErysipelotrichaceae_bacterium_3_1_530.0110.6490.731
speciesBacteroides_sp_2_1_22-0.010.6540.735
genusAcidaminococcus0.010.680.76
speciesEnterobacteria_phage_HK544-0.0090.6820.76
speciesCoprobacillus_sp_29_10.0090.6830.76
speciesBacteroides_faecis-0.0090.6830.76
speciesBacteroides_eggerthii-0.0090.6890.765
speciesBacteroides_fluxus-0.0090.690.765
speciesCollinsella_intestinalis0.0090.6950.768
speciesOscillibacter_sp_KLE_1728-0.0090.7040.776
speciesEubacterium_sp_3_1_310.0080.7160.788
orderLactobacillales-0.0080.7180.788
classBacilli-0.0080.7210.79
speciesLactococcus_phage_bIL670.0080.7240.791
speciesEnterococcus_faecium0.0080.7270.792
speciesKlebsiella_phage_KP360.0070.7470.81
classBetaproteobacteria-0.0070.7480.81
familyClostridiales_Family_XI_Incertae_Sedis0.0070.7480.81
speciesLactobacillus_fermentum-0.0070.7560.817
speciesEnterococcus_faecalis-0.0070.7650.824
speciesMitsuokella_multacida-0.0070.7660.824
orderBurkholderiales-0.0070.7790.836
genusProteus0.0060.7810.836
genusFlavonifractor-0.0060.7970.849
speciesFlavonifractor_plautii-0.0060.7970.849
speciesClostridium_clostridioforme0.0060.7990.849
genusTunalikevirus0.0050.8210.871
genusPeptoniphilus-0.0050.8280.876
speciesParabacteroides_goldsteinii-0.0050.8380.885
speciesGemella_morbillorum-0.0050.8420.885
speciesLactobacillus_reuteri-0.0050.8420.885
speciesLachnospiraceae_bacterium_1_1_57FAA0.0040.8520.894
speciesStreptococcus_phage_Sfi21-0.0040.8620.902
genusStreptococcus-0.0040.8670.905
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0040.8730.91
speciesBifidobacterium_dentium0.0040.8770.912
genusClostridiales_noname0.0030.8820.914
genusClostridium0.0030.8830.914
speciesEubacterium_eligens0.0030.8850.914
familyClostridiaceae0.0030.9020.93
speciesBifidobacterium_breve-0.0030.9050.931
genusPhascolarctobacterium0.0020.9180.94
speciesPhascolarctobacterium_succinatutens0.0020.9180.94
genusClostridiaceae_noname0.0020.9310.949
speciesClostridiaceae_bacterium_JC1180.0020.9310.949
familyEnterococcaceae0.0020.9350.951
speciesParabacteroides_sp_D130.0020.9370.951
genusEnterococcus-0.0010.9590.971
speciesLactobacillus_vaginalis-0.0010.9760.986
genusPeptostreptococcus0.00.9860.99
speciesPeptostreptococcus_stomatis0.00.9860.99
familyStreptococcaceae0.00.9870.99
speciesParabacteroides_sp_20_30.00.9890.99
speciesBacteroides_sp_4_3_47FAA0.00.990.99
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Colorectal cancerAustria64355.31281642585e-051.05680160877e-050.110446446415542118.3415
Crohns diseaseSpain17661.94314521869e-070.0001435136221730.183880150641642654.6168
Type II diabetesDenmark752770.0001854414388590.0001084932427110.2826219395971524649.9754
Rheumatoid arthritisChina127982.13215676186e-063.50707115193e-060.7970403673042483282.8092
ObesityDenmark1691236.49856573015e-050.0001699301176710.8471638348882738390.0431
Type II diabetesSweden53920.0001345632665830.0003979637796790.8494444091322548986.3156
Ulcerative colitisSpain78665.41501695201e-050.0001435136221730.8889390910722782391.7827
Type II diabetesChina1831852.80981089341e-065.50667163538e-060.909016747592863394.6264
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382