MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-30 21:34:55 PST
Job id & description: 1663, EC34_2
Query type: protein
Count queries & homologs: 93, 57
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|A0A174F2M5|A0A174F2M5_9FIRM161033CompleteK01463COG0791;COG0739FirmicutesEubacterium99.47100.096.46
tr|A0A174F2M5|A0A174F2M5_9FIRM158604CompleteK01463COG0791;COG0739FirmicutesCoprococcus100.0100.095.74
tr|A0A174F2M5|A0A174F2M5_9FIRM158451CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.095.84
tr|A0A174F2M5|A0A174F2M5_9FIRM160703CompleteK01463COG0791;COG0739FirmicutesEubacterium99.47100.096.25
tr|A0A174F2M5|A0A174F2M5_9FIRM160997CompleteK01463COG0791;COG0739Firmicutesunknown99.47100.095.28
tr|A0A174F2M5|A0A174F2M5_9FIRM160961CompleteK01463COG0791;COG0739FirmicutesEubacterium99.47100.094.43
tr|A0A174F2M5|A0A174F2M5_9FIRM161020CompleteK01463COG0791;COG0739FirmicutesRuminococcus99.47100.093.35
tr|A0A174F2M5|A0A174F2M5_9FIRM160968CompleteK01463COG0791;COG0739FirmicutesEubacterium99.47100.094.11
tr|A0A174F2M5|A0A174F2M5_9FIRM161072CompleteK01463COG0791;COG0739FirmicutesEubacterium99.47100.094.75
tr|A0A174F2M5|A0A174F2M5_9FIRM161022CompleteK01463COG0791;COG0739FirmicutesEubacterium99.47100.093.78
tr|A0A174F2M5|A0A174F2M5_9FIRM183775CompleteK01463COG0791;COG0739Firmicutesunknown99.47100.087.67
tr|A0A174F2M5|A0A174F2M5_9FIRM165849CompleteK01463COG0791;COG0739unknownunknown99.47100.083.28
tr|A0A174F2M5|A0A174F2M5_9FIRM165693CompleteK01463COG0791;COG0739unknownunknown99.47100.083.39
tr|A0A174M4B0|A0A174M4B0_9FIRM308702Lack 5'-endK01447COG0739Firmicutesunknown100.098.9497.72
tr|A0A174M4B0|A0A174M4B0_9FIRM304587CompleteK01447COG0739Firmicutesunknown100.0100.094.47
tr|A0A174M4B0|A0A174M4B0_9FIRM309274CompleteK01447bactNOG11867Firmicutesunknown100.0100.084.13
tr|A0A174M4B0|A0A174M4B0_9FIRM469252Lack 3'-endunknownCOG0739Firmicutesunknown87.28100.097.24
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT616324CompleteK01447COG0791FirmicutesClostridium100.0100.098.13
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT614395CompleteK01447COG0791FirmicutesClostridium100.099.8396.94
tr|A0A174R1Z8|A0A174R1Z8_9FIRM635122CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.097.77
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT616212CompleteK01447COG0791FirmicutesClostridium100.0100.096.43
tr|A0A143X3H5|A0A143X3H5_9FIRM456515CompleteK01447NOG244109FirmicutesClostridium100.086.6399.82
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT616354CompleteK01447COG0791FirmicutesClostridium100.0100.096.77
tr|A0A143X3H5|A0A143X3H5_9FIRM461092CompleteK01447NOG244109FirmicutesClostridium100.087.0298.07
tr|A0A174S5L4|A0A174S5L4_9FIRM682927CompleteK01447COG0791FirmicutesRoseburia100.0100.098.06
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT617966CompleteK01447COG0791FirmicutesClostridium100.0100.096.1
tr|A0A143X3H5|A0A143X3H5_9FIRM461803CompleteK01447COG0791FirmicutesClostridium100.087.0295.96
tr|A0A143X3H5|A0A143X3H5_9FIRM462141CompleteK01447NOG244109FirmicutesClostridium100.087.0293.33
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT630165CompleteK01447COG0791FirmicutesClostridium100.0100.092.53
tr|A0A143X3H5|A0A143X3H5_9FIRM459185CompleteK01447NOG244109FirmicutesClostridium100.087.0492.12
tr|A0A143X3H5|A0A143X3H5_9FIRM460317CompleteK01447NOG244109Firmicutesunknown100.087.0492.64
tr|A0A174R1Z8|A0A174R1Z8_9FIRM636019CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.094.68
tr|A0A143X3H5|A0A143X3H5_9FIRM459925CompleteK01447NOG244109Firmicutesunknown100.087.0491.94
tr|A0A174R1Z8|A0A174R1Z8_9FIRM642910CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.090.39
tr|A0A143X3H5|A0A143X3H5_9FIRM459537CompleteK01447COG0791FirmicutesClostridium100.087.0490.19
tr|A0A174R1Z8|A0A174R1Z8_9FIRM675722CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.092.8
tr|A0A143X3H5|A0A143X3H5_9FIRM459282CompleteK01447NOG244109FirmicutesClostridium100.087.0491.42
tr|A0A174R1Z8|A0A174R1Z8_9FIRM719361Lack 3'-endK01447COG0791FirmicutesPseudoflavonifractor97.43100.092.96
tr|A0A174R1Z8|A0A174R1Z8_9FIRM642628CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.091.77
tr|A0A143X3H5|A0A143X3H5_9FIRM528540CompleteK01447NOG244109FirmicutesClostridium92.6384.6294.32
tr|A0A174R1Z8|A0A174R1Z8_9FIRM641480CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.087.65
tr|A0A0F0CLG3|A0A0F0CLG3_9CLOT775641Lack 3'-endunknownCOG0791FirmicutesClostridium92.36100.093.01
tr|A0A174R1Z8|A0A174R1Z8_9FIRM658777CompleteK01447COG0791FirmicutesFaecalibacterium100.0100.081.82
tr|D4L3I2|D4L3I2_9FIRM1302674CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.099.32
tr|A0A174R1Z8|A0A174R1Z8_9FIRM734076CompleteK01447COG0791Firmicutesunknown92.2897.181.23
tr|D4L3I2|D4L3I2_9FIRM1302837CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.096.36
tr|A0A174R1Z8|A0A174R1Z8_9FIRM771755CompleteK01447COG0791FirmicutesPseudoflavonifractor92.2897.2285.5
tr|A0A174R1Z8|A0A174R1Z8_9FIRM681618CompleteK01447COG0791Firmicutesunknown92.2894.3780.48
tr|A0A143X3H5|A0A143X3H5_9FIRM1129240Lack 5'-endK01447COG0791FirmicutesClostridium81.4100.092.69
tr|D4L3I2|D4L3I2_9FIRM1302762CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.093.41
tr|D4L3I2|D4L3I2_9FIRM1271859Lack 5'-endK01308COG3409;COG2866FirmicutesRoseburia100.098.8889.55
tr|A0A174R1Z8|A0A174R1Z8_9FIRM749545CompleteK01447COG0791FirmicutesFaecalibacterium91.7795.2582.06
tr|A0A174R1Z8|A0A174R1Z8_9FIRM1001913Lack 3'-endK01447COG0791FirmicutesFaecalibacterium83.8897.3482.21
tr|A0A0F0C6W3|A0A0F0C6W3_9CLOT2140749Lack 5'-endK01308COG2866unknownunknown90.23100.098.86
tr|A0A0F0C6W3|A0A0F0C6W3_9CLOT2060787CompleteK01308COG2866unknownunknown91.7799.4482.91
tr|A0A174SDU4|A0A174SDU4_9FIRM2829074CompleteK01308COG2866FirmicutesAnaerotruncus100.0100.0100.0
tr|C8NF38|C8NF38_9LACT5001570CompleteunknownNOG86119FirmicutesGranulicatella100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classClostridia0.5949.68e-1792.28e-176
orderClostridiales0.5949.68e-1792.28e-176
phylumFirmicutes0.5471.13e-1461.11e-144
classBacteroidia-0.5471.38e-1461.11e-144
orderBacteroidales-0.5471.38e-1461.11e-144
phylumBacteroidetes-0.5471.41e-1461.11e-144
orderCoriobacteriales0.5268.08e-1344.77e-132
familyCoriobacteriaceae0.5268.08e-1344.77e-132
speciesEubacterium_hallii0.5191.15e-1296.03e-128
familyRuminococcaceae0.5091.28e-1236.04e-122
genusDorea0.4956.17e-1162.65e-114
speciesRuminococcus_obeum0.4935.08e-1152e-113
speciesRuminococcus_sp_5_1_39BFAA0.483.35e-1081.22e-106
speciesRuminococcus_torques0.461.7e-985.73e-97
genusRuminococcus0.4574.63e-971.46e-95
phylumActinobacteria0.455.14e-941.43e-92
classActinobacteria0.455.14e-941.43e-92
genusSubdoligranulum0.4492.75e-937.21e-92
speciesSubdoligranulum_unclassified0.4451.24e-913.08e-90
speciesAnaerostipes_hadrus0.4419.07e-902.14e-88
speciesCoprococcus_comes0.4361.51e-873.39e-86
speciesDorea_longicatena0.4353.46e-877.42e-86
familyLachnospiraceae0.4271.2e-832.46e-82
genusBlautia0.4193.45e-806.78e-79
genusAnaerostipes0.4135.4e-781.02e-76
speciesDorea_formicigenerans0.4064.19e-757.61e-74
speciesEubacterium_ramulus0.4042.68e-744.69e-73
genusCoprococcus0.41.02e-721.72e-71
familyEubacteriaceae0.3941.31e-702.13e-69
genusEubacterium0.3941.57e-702.47e-69
speciesClostridium_leptum0.3883.24e-684.93e-67
genusAdlercreutzia0.3832.55e-663.65e-65
speciesAdlercreutzia_equolifaciens0.3832.55e-663.65e-65
speciesStreptococcus_thermophilus0.3798.64e-651.2e-63
speciesCoprococcus_catus0.3722.06e-622.78e-61
genusCollinsella0.371.34e-611.76e-60
speciesLachnospiraceae_bacterium_5_1_63FAA0.3633.05e-593.89e-58
speciesCollinsella_aerofaciens0.3595.7e-587.08e-57
genusPrevotella-0.3361.23e-501.49e-49
genusLachnospiraceae_noname0.3321.99e-492.35e-48
orderBifidobacteriales0.3313.8e-494.27e-48
familyBifidobacteriaceae0.3313.8e-494.27e-48
familyBacteroidaceae-0.3291.64e-481.76e-47
genusBacteroides-0.3291.64e-481.76e-47
genusBifidobacterium0.3292.06e-482.16e-47
speciesPrevotella_copri-0.3261.78e-471.83e-46
speciesErysipelotrichaceae_bacterium_21_30.3213.54e-463.56e-45
genusGordonibacter0.3184.56e-454.39e-44
speciesGordonibacter_pamelaeae0.3184.56e-454.39e-44
genusPseudoflavonifractor0.3131.02e-439.44e-43
speciesPseudoflavonifractor_capillosus0.3131.02e-439.44e-43
speciesBifidobacterium_longum0.316.32e-435.74e-42
speciesKlebsiella_pneumoniae-0.3082.58e-422.3e-41
speciesLachnospiraceae_bacterium_7_1_58FAA0.3073.98e-423.48e-41
speciesEubacterium_rectale0.3067.96e-426.83e-41
speciesEubacterium_siraeum0.2972.7e-392.28e-38
speciesBifidobacterium_adolescentis0.2932.43e-382.01e-37
speciesBacteroides_stercoris-0.2892.77e-372.25e-36
speciesLachnospiraceae_bacterium_3_1_46FAA0.2876.88e-375.5e-36
speciesHaemophilus_parainfluenzae-0.2861.72e-361.35e-35
genusHaemophilus-0.2852.1e-361.62e-35
orderPasteurellales-0.2837.46e-365.59e-35
familyPasteurellaceae-0.2837.46e-365.59e-35
genusKlebsiella-0.2812.94e-352.17e-34
familyPrevotellaceae-0.2773.19e-342.32e-33
speciesBlautia_hydrogenotrophica0.2773.46e-342.47e-33
phylumFusobacteria-0.2741.35e-339.23e-33
classFusobacteriia-0.2741.35e-339.23e-33
orderFusobacteriales-0.2741.35e-339.23e-33
phylumVerrucomicrobia0.2723.74e-332.35e-32
classVerrucomicrobiae0.2723.74e-332.35e-32
orderVerrucomicrobiales0.2723.74e-332.35e-32
familyVerrucomicrobiaceae0.2723.74e-332.35e-32
genusAkkermansia0.2723.74e-332.35e-32
speciesAkkermansia_muciniphila0.2723.74e-332.35e-32
familyFusobacteriaceae-0.2717.84e-334.87e-32
genusFusobacterium-0.271.33e-328.15e-32
familyActinomycetaceae0.2683.7e-322.24e-31
genusActinomyces0.2675.85e-323.5e-31
speciesEggerthella_lenta0.2635.21e-313.07e-30
orderActinomycetales0.2571.66e-299.67e-29
speciesFusobacterium_mortiferum-0.2571.7e-299.79e-29
speciesRuminococcus_bromii0.2553.28e-291.87e-28
speciesBacteroides_thetaiotaomicron-0.2546.48e-293.64e-28
speciesErysipelotrichaceae_bacterium_6_1_450.2522.13e-281.18e-27
speciesAnaerotruncus_unclassified0.2512.34e-281.28e-27
classErysipelotrichia0.2513.56e-281.89e-27
orderErysipelotrichales0.2513.56e-281.89e-27
familyErysipelotrichaceae0.2513.56e-281.89e-27
speciesBacteroides_xylanisolvens-0.2498.69e-284.56e-27
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2431.72e-268.92e-26
genusRuminococcaceae_noname0.2431.93e-269.8e-26
speciesRuminococcaceae_bacterium_D160.2431.93e-269.8e-26
speciesBacteroides_plebeius-0.2413.64e-261.83e-25
genusHoldemania0.2414.01e-261.99e-25
speciesPrevotella_stercorea-0.2372.64e-251.3e-24
speciesMegamonas_unclassified-0.2355.99e-252.91e-24
genusMegamonas-0.2356.93e-253.34e-24
phylumProteobacteria-0.2349.51e-254.53e-24
genusAnaerotruncus0.2313.7e-241.75e-23
speciesErysipelotrichaceae_bacterium_2_2_44A0.235.79e-242.71e-23
speciesLactococcus_lactis0.2272.23e-231.03e-22
speciesHoldemania_filiformis0.2163.21e-211.47e-20
familySiphoviridae0.2148.8e-213.99e-20
speciesPropionibacterium_freudenreichii0.2131.54e-206.92e-20
genusEggerthella0.2121.74e-207.75e-20
classBetaproteobacteria-0.213.85e-201.7e-19
phylumEuryarchaeota0.2098.17e-203.57e-19
genusMethanobrevibacter0.2081.07e-194.63e-19
classGammaproteobacteria-0.2071.33e-195.71e-19
orderBurkholderiales-0.2071.61e-196.85e-19
speciesMethanobrevibacter_smithii0.2062.07e-198.72e-19
speciesBifidobacterium_animalis0.2052.87e-191.2e-18
classMethanobacteria0.2045.15e-192.1e-18
orderMethanobacteriales0.2045.15e-192.1e-18
familyMethanobacteriaceae0.2045.15e-192.1e-18
familySutterellaceae-0.2045.34e-192.15e-18
speciesStreptococcus_parasanguinis0.2011.58e-186.32e-18
familyStreptococcaceae0.22.25e-188.92e-18
genusParabacteroides-0.22.6e-181.02e-17
phylumViruses_noname0.1994.11e-181.59e-17
classViruses_noname0.1994.11e-181.59e-17
genusErysipelotrichaceae_noname0.1978.75e-183.36e-17
genusPropionibacterium0.1961.03e-173.89e-17
genusSiphoviridae_noname0.1961.03e-173.89e-17
speciesBacteroides_ovatus-0.1951.85e-176.93e-17
genusLactococcus0.1952e-177.43e-17
genusStreptococcus0.1952.05e-177.56e-17
genusEnterobacter-0.1942.13e-177.79e-17
speciesButyrivibrio_unclassified0.1942.53e-179.19e-17
speciesEggerthella_unclassified0.1933.51e-171.26e-16
speciesClostridium_nexile-0.1918.83e-173.16e-16
genusMegasphaera-0.1919.18e-173.26e-16
familyPropionibacteriaceae0.1882.71e-169.55e-16
speciesEnterobacter_cloacae-0.1874.23e-161.48e-15
genusVeillonella-0.1865.06e-161.76e-15
speciesVeillonella_unclassified-0.1857.78e-162.68e-15
speciesSubdoligranulum_sp_4_3_54A2FAA0.1831.78e-156.09e-15
speciesBacteroides_finegoldii-0.1822.24e-157.61e-15
speciesBacteroides_nordii-0.1813.2e-151.08e-14
classBacilli0.184.17e-151.4e-14
orderLactobacillales0.184.97e-151.65e-14
orderCaudovirales0.185.04e-151.66e-14
speciesMegamonas_hypermegale-0.1795.78e-151.89e-14
speciesLactobacillus_delbrueckii0.1796.47e-152.11e-14
speciesVeillonella_parvula-0.1789.4e-153.04e-14
speciesFusobacterium_ulcerans-0.1771.07e-143.44e-14
speciesPrevotella_buccae-0.1771.16e-143.7e-14
speciesFusobacterium_varium-0.1761.66e-145.26e-14
speciesEubacterium_ventriosum0.1761.91e-146.01e-14
speciesLactococcus_phage_P6800.1762.06e-146.44e-14
speciesMegamonas_funiformis-0.1734.25e-141.32e-13
speciesDialister_invisus0.1719.85e-143.04e-13
speciesBacteroides_vulgatus-0.1711.03e-133.16e-13
speciesMegamonas_rupellensis-0.1691.69e-135.15e-13
genusButyrivibrio0.1683.09e-139.35e-13
genusSolobacterium0.1674.08e-131.22e-12
speciesSolobacterium_moorei0.1674.08e-131.22e-12
genusDialister0.1649.45e-132.81e-12
orderEnterobacteriales-0.1631.28e-123.75e-12
familyEnterobacteriaceae-0.1631.28e-123.75e-12
speciesLachnospiraceae_bacterium_1_4_56FAA0.1621.7e-124.95e-12
speciesEubacterium_cylindroides0.1612.81e-128.14e-12
speciesBacteroides_faecis-0.163.21e-129.24e-12
speciesStreptococcus_sanguinis0.1594.98e-121.42e-11
speciesMegasphaera_micronuciformis-0.1595.01e-121.42e-11
speciesLactobacillus_casei_paracasei0.1551.62e-114.58e-11
speciesC2likevirus_unclassified0.1551.85e-115.2e-11
genusC2likevirus0.1541.9e-115.31e-11
familyBacillales_noname0.1532.9e-118e-11
genusGemella0.1532.9e-118e-11
speciesVeillonella_dispar-0.1524.45e-111.22e-10
speciesBacteroides_fragilis-0.1514.82e-111.32e-10
genusBarnesiella0.1515.37e-111.45e-10
speciesBarnesiella_intestinihominis0.1515.37e-111.45e-10
orderBacillales0.1515.73e-111.54e-10
genusTuricibacter0.1481.23e-103.28e-10
speciesLactobacillus_mucosae-0.1471.51e-104e-10
speciesLactobacillus_salivarius-0.1471.58e-104.17e-10
genusLeuconostoc0.1471.78e-104.67e-10
familyOscillospiraceae0.1453.35e-108.69e-10
genusOscillibacter0.1453.35e-108.69e-10
speciesTuricibacter_unclassified0.1443.69e-109.52e-10
familyBacteroidales_noname0.1443.89e-109.87e-10
genusBacteroidales_noname0.1443.89e-109.87e-10
speciesBacteroidales_bacterium_ph80.1443.89e-109.87e-10
speciesBacteroides_intestinalis-0.1435.41e-101.37e-09
speciesRoseburia_intestinalis0.1435.87e-101.47e-09
genusOlsenella0.1435.9e-101.47e-09
speciesBlautia_producta0.1426.04e-101.5e-09
speciesMitsuokella_unclassified0.1426.57e-101.62e-09
speciesTuricibacter_sanguinis0.1426.67e-101.64e-09
speciesRuminococcus_lactaris0.141.08e-092.64e-09
speciesOscillibacter_unclassified0.141.23e-092.99e-09
genusMitsuokella0.141.34e-093.24e-09
speciesBacteroides_coprocola-0.1391.53e-093.68e-09
speciesOlsenella_unclassified0.1391.7e-094.07e-09
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1382.03e-094.84e-09
speciesEggerthella_sp_1_3_56FAA0.1363.52e-098.35e-09
speciesAlistipes_sp_AP110.1363.6e-098.5e-09
speciesVeillonella_atypica-0.1354.82e-091.13e-08
speciesMethanobrevibacter_unclassified0.1337.71e-091.8e-08
speciesClostridium_spiroforme0.131.76e-084.09e-08
speciesBifidobacterium_catenulatum0.131.85e-084.28e-08
speciesParabacteroides_distasonis-0.1292.17e-085e-08
speciesCampylobacter_concisus-0.1282.8e-086.42e-08
speciesMegasphaera_unclassified-0.1273.39e-087.73e-08
genusEscherichia-0.1264.82e-081.09e-07
genusFaecalibacterium0.1255.3e-081.19e-07
speciesFaecalibacterium_prausnitzii0.1255.3e-081.19e-07
speciesLactobacillus_rhamnosus0.1256.31e-081.41e-07
speciesParabacteroides_merdae-0.1248.06e-081.79e-07
familyClostridiales_Family_XI_Incertae_Sedis0.1221.15e-072.55e-07
speciesClostridium_perfringens-0.1221.34e-072.96e-07
speciesStreptococcus_salivarius0.1211.43e-073.14e-07
speciesStreptococcus_vestibularis0.121.73e-073.78e-07
genusPyramidobacter-0.121.76e-073.81e-07
speciesPyramidobacter_piscolens-0.121.76e-073.81e-07
speciesRoseburia_hominis0.1192.35e-075.06e-07
phylumSynergistetes-0.1192.44e-075.16e-07
classSynergistia-0.1192.44e-075.16e-07
orderSynergistales-0.1192.44e-075.16e-07
familySynergistaceae-0.1192.44e-075.16e-07
speciesParabacteroides_goldsteinii-0.1192.65e-075.58e-07
familyPorphyromonadaceae-0.1192.74e-075.75e-07
speciesEscherichia_coli-0.1182.97e-076.2e-07
speciesAlistipes_onderdonkii0.1183.01e-076.26e-07
speciesBacteroides_salyersiae-0.1183.05e-076.31e-07
genusAggregatibacter-0.1183.26e-076.72e-07
orderViruses_noname0.1164.51e-079.26e-07
speciesAnaerotruncus_colihominis0.1165.02e-071.03e-06
genusRothia0.1165.23e-071.06e-06
speciesBacteroides_oleiciplenus-0.1165.29e-071.07e-06
speciesHoldemania_unclassified0.1165.49e-071.11e-06
familyMicrococcaceae0.1156.01e-071.21e-06
speciesBacteroides_massiliensis-0.1147.72e-071.54e-06
speciesWeissella_confusa-0.1138.86e-071.76e-06
speciesBacteroides_caccae-0.1139.7e-071.92e-06
speciesLachnospiraceae_bacterium_5_1_57FAA0.1131.04e-062.05e-06
familyVeillonellaceae-0.1111.64e-063.23e-06
speciesAggregatibacter_segnis-0.111.77e-063.47e-06
speciesStreptococcus_mutans0.1092.47e-064.82e-06
speciesFusobacterium_nucleatum-0.1082.65e-065.15e-06
speciesLactococcus_phage_phi70.1082.94e-065.69e-06
speciesEnterobacter_aerogenes-0.1083.02e-065.82e-06
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1083.05e-065.85e-06
speciesCitrobacter_freundii-0.1063.99e-067.62e-06
speciesOdoribacter_laneus0.1064.19e-067.97e-06
speciesStreptococcus_infantarius-0.1046.6e-061.25e-05
genusCoriobacteriaceae_noname0.1046.64e-061.25e-05
speciesOdoribacter_unclassified0.1037.99e-061.5e-05
speciesRothia_mucilaginosa0.1038.44e-061.58e-05
speciesBifidobacterium_pseudocatenulatum-0.1038.62e-061.61e-05
speciesCoriobacteriaceae_bacterium_phI0.1021.06e-051.97e-05
speciesLactococcus_phage_jm20.11.35e-052.5e-05
genusCitrobacter-0.11.43e-052.63e-05
genusSutterellaceae_unclassified-0.11.43e-052.63e-05
classEpsilonproteobacteria-0.11.47e-052.68e-05
orderCampylobacterales-0.11.47e-052.68e-05
speciesStreptococcus_pasteurianus-0.0991.85e-053.36e-05
speciesRuminococcus_sp_JC3040.0982e-053.62e-05
speciesEubacterium_sp_3_1_310.0982.08e-053.75e-05
classNegativicutes-0.0982.39e-054.27e-05
orderSelenomonadales-0.0982.39e-054.27e-05
familyCampylobacteraceae-0.0972.65e-054.72e-05
speciesEnterococcus_faecium0.0972.91e-055.16e-05
genusCampylobacter-0.0962.95e-055.21e-05
speciesClostridium_asparagiforme0.0963.01e-055.3e-05
speciesCitrobacter_unclassified-0.0953.84e-056.74e-05
familyPeptostreptococcaceae0.0935.83e-050.000102
genusActinobacillus-0.0917.65e-050.000133
speciesActinobacillus_unclassified-0.0917.65e-050.000133
speciesPeptostreptococcus_anaerobius0.0918.31e-050.000144
genusCoprobacter0.0918.48e-050.000146
speciesCoprobacter_fastidiosus0.0918.48e-050.000146
speciesClostridium_sp_KLE_17550.099.2e-050.000157
speciesLactobacillus_acidophilus0.090.0001010.000172
genusParvimonas0.090.0001020.000173
speciesParvimonas_unclassified0.090.0001040.000176
genusEnterococcus0.0890.0001140.000192
speciesBacteroides_sp_3_1_19-0.0890.0001150.000193
familyEnterococcaceae0.0890.0001170.000195
genusPeptoniphilus0.0890.0001170.000195
genusWeissella-0.0890.0001220.000203
speciesRuminococcus_gnavus-0.0870.000160.000265
speciesBacteroides_coprophilus-0.0860.0001930.000319
speciesBifidobacterium_bifidum0.0860.0002060.000339
genusPeptostreptococcaceae_noname0.0860.0002120.000347
orderPseudomonadales0.0840.0002660.000434
speciesLachnospiraceae_bacterium_1_1_57FAA0.0830.0003060.000498
speciesEubacterium_limosum0.0820.0003560.000577
speciesMegasphaera_elsdenii-0.0820.0003710.0006
genusButyricimonas-0.0810.0004230.000679
speciesButyricimonas_synergistica-0.0810.0004230.000679
speciesHaemophilus_paraphrohaemolyticus-0.080.0004970.000795
genusRoseburia0.080.0005160.000823
speciesCoprobacillus_sp_D60.080.0005660.0009
speciesRoseburia_unclassified0.0790.0006760.00107
genusPeptostreptococcus0.0780.0007040.00111
genusParasutterella-0.0780.0007850.00123
speciesParasutterella_excrementihominis-0.0780.0007850.00123
speciesStreptococcus_mitis_oralis_pneumoniae0.0750.001090.0017
speciesKlebsiella_unclassified-0.0750.001140.00178
familyLactobacillaceae0.0750.001220.00189
speciesGemella_morbillorum0.0730.001580.00245
speciesAlistipes_unclassified0.0730.001590.00245
speciesStreptococcus_gordonii0.0730.001620.00249
speciesClostridium_bartlettii0.0720.001790.00274
speciesClostridium_clostridioforme0.0720.001820.00278
speciesBacteroides_eggerthii-0.0720.001850.00282
speciesAcidaminococcus_fermentans-0.0720.001870.00284
speciesDesulfovibrio_piger-0.0720.001880.00284
speciesLactococcus_phage_936_sensu_lato0.0720.001970.00297
speciesStreptococcus_australis0.0710.002170.00326
genusLactobacillus0.0710.002230.00334
genusPantoea-0.0690.002740.00408
speciesPantoea_unclassified-0.0690.002740.00408
genusPorphyromonas0.0670.003640.0054
speciesCoprococcus_sp_ART55_10.0660.004110.00608
speciesErysipelotrichaceae_bacterium_3_1_530.0660.004120.00608
genusClostridium0.0660.004510.00663
genusClostridiaceae_noname0.0660.004570.00668
speciesClostridiaceae_bacterium_JC1180.0660.004570.00668
familyClostridiaceae0.0650.004860.00708
speciesOdoribacter_splanchnicus-0.0630.006360.00924
speciesCollinsella_tanakaei-0.0630.00650.00941
familyStaphylococcaceae0.0630.006760.00976
speciesEubacterium_biforme0.0620.007110.0102
speciesAcidaminococcus_intestini-0.0620.007620.0109
speciesPeptostreptococcaceae_noname_unclassified0.0610.008090.0116
speciesHaemophilus_sputorum-0.0610.00860.0123
genusBurkholderiales_noname-0.0590.01030.0146
speciesBurkholderiales_bacterium_1_1_47-0.0590.01030.0146
speciesLactobacillus_plantarum0.0590.01070.0151
speciesPorphyromonas_asaccharolytica0.0590.01110.0156
familyBurkholderiales_noname-0.0580.01150.0162
speciesParabacteroides_unclassified-0.0580.0120.0168
speciesLactococcus_garvieae-0.0580.01240.0173
genusStaphylococcus0.0570.01330.0185
familyClostridiales_noname0.0550.01680.0233
speciesLachnospiraceae_bacterium_8_1_57FAA0.0540.01920.0266
speciesAcidaminococcus_unclassified0.0540.02040.0282
familyLeuconostocaceae0.0530.02270.0312
genusButyricicoccus0.0520.02510.0343
speciesButyricicoccus_pullicaecorum0.0520.02510.0343
orderAeromonadales-0.050.03090.0422
speciesOscillibacter_sp_KLE_17450.050.03220.0438
speciesMitsuokella_multacida-0.0490.03270.0444
familyMyoviridae-0.0490.03370.0456
speciesWeissella_cibaria-0.0490.03430.0463
speciesEscherichia_unclassified-0.0490.03580.0481
speciesStreptococcus_phage_Sfi210.0490.0360.0481
speciesAlistipes_indistinctus0.0490.0360.0481
genusMethanosphaera0.0480.03640.0484
speciesMethanosphaera_stadtmanae0.0480.03640.0484
speciesCoprococcus_eutactus0.0470.04050.0537
speciesAnaerostipes_unclassified-0.0470.04210.0557
speciesEnterobacteria_phage_HK544-0.0450.04960.0654
genusOdoribacter-0.0450.05130.0674
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0450.0540.0708
speciesBacteroides_pectinophilus0.0440.05930.0775
speciesLactobacillus_oris-0.0440.05970.0778
speciesPorphyromonas_uenonis0.0430.06340.0824
speciesBacteroides_clarus-0.0420.06660.0864
speciesAlistipes_sp_HGB50.0420.07230.0935
genusAcidaminococcaceae_unclassified0.0420.07250.0935
speciesClostridium_sp_L2_500.0410.07730.0994
speciesLactococcus_phage_bIL670.0410.07890.101
genusCoprobacillus0.0410.07910.101
speciesAlistipes_senegalensis0.0410.07920.101
speciesBifidobacterium_dentium0.0410.07990.102
speciesLeuconostoc_lactis-0.040.08150.103
speciesEnterococcus_faecalis0.040.08580.109
speciesBacteroides_dorei-0.0390.08930.113
speciesBacteroides_cellulosilyticus0.0390.0930.117
speciesBacteroides_uniformis0.0390.09350.117
speciesSutterella_parvirubra-0.0380.09650.121
speciesLactobacillus_crispatus-0.0370.1090.136
speciesBacteroides_sp_2_1_22-0.0370.110.137
speciesLactobacillus_ruminis-0.0360.120.149
speciesButyrivibrio_crossotus0.0360.1220.151
speciesParaprevotella_xylaniphila-0.0350.1260.156
speciesEubacterium_dolichum0.0350.1290.159
speciesCoprobacillus_sp_29_10.0350.130.16
genusSutterella-0.0350.1340.164
genusSuccinatimonas-0.0350.1350.165
speciesSuccinatimonas_hippei-0.0350.1350.165
speciesCollinsella_unclassified0.0330.160.195
genusFlavonifractor-0.0320.1690.205
speciesFlavonifractor_plautii-0.0320.1690.205
genusParaprevotella-0.0320.170.205
genusCatenibacterium0.0320.1710.205
speciesCatenibacterium_mitsuokai0.0320.1710.205
speciesBifidobacterium_breve-0.0310.1740.208
genusProteus-0.0310.1760.21
speciesParabacteroides_johnsonii-0.0310.1760.21
speciesKlebsiella_sp_MS_92_3-0.0310.180.214
speciesDorea_unclassified-0.030.1880.223
genusPhascolarctobacterium0.030.2020.238
speciesPhascolarctobacterium_succinatutens0.030.2020.238
speciesLactobacillus_gasseri0.0290.2040.24
familySuccinivibrionaceae-0.0290.2120.248
genusMyoviridae_noname-0.0290.2120.248
speciesParaprevotella_unclassified-0.0290.2120.248
genusLambdalikevirus0.0290.2140.249
genusMorganella-0.0280.220.255
speciesMorganella_morganii-0.0280.220.255
familyAcidaminococcaceae0.0280.2310.266
classDeltaproteobacteria-0.0280.2320.266
orderDesulfovibrionales-0.0280.2320.266
familyDesulfovibrionaceae-0.0280.2320.266
speciesStreptococcus_lutetiensis-0.0270.2430.278
speciesKlebsiella_oxytoca-0.0270.2450.28
speciesAlistipes_shahii-0.0270.2490.284
speciesClostridium_ramosum0.0260.2620.298
speciesLactobacillus_reuteri0.0250.2860.324
speciesClostridium_hathewayi0.0240.30.34
genusDesulfovibrio-0.0240.3010.34
speciesLactobacillus_vaginalis-0.0230.3120.351
speciesSutterella_wadsworthensis-0.0230.3230.363
speciesRuminococcus_callidus-0.0220.3330.373
speciesClostridium_sp_ATCC_BAA_442-0.0220.3360.376
speciesParaprevotella_clara-0.0210.3550.396
speciesPeptostreptococcus_stomatis0.0210.360.401
genusAcidaminococcus-0.0210.3620.402
speciesBilophila_unclassified-0.0210.3660.406
speciesBacteroides_fluxus0.0190.4070.45
speciesAlistipes_putredinis-0.0190.4130.455
speciesBacteroides_salanitronis0.0190.4140.455
speciesProteus_mirabilis-0.0180.4340.476
speciesKlebsiella_phage_KP36-0.0180.4380.48
speciesCoprobacillus_unclassified0.0180.4440.485
speciesClostridium_citroniae-0.0170.4520.493
speciesBilophila_wadsworthia0.0170.4530.493
genusBilophila-0.0170.4660.506
speciesHoldemania_sp_AP20.0170.4680.507
speciesClostridiales_bacterium_1_7_47FAA-0.0160.4850.524
speciesAlistipes_finegoldii0.0150.5170.557
speciesRuminococcus_champanellensis0.0140.5350.575
genusTunalikevirus-0.0140.5430.582
speciesClostridium_bolteae0.0140.5510.59
speciesBacteroides_sp_4_3_47FAA-0.0130.5720.611
speciesLactobacillus_amylovorus0.0120.5930.632
speciesClostridium_symbiosum-0.0120.5970.635
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0120.6030.64
speciesDialister_succinatiphilus-0.0120.6080.643
genusOxalobacter-0.0120.6180.651
speciesOxalobacter_formigenes-0.0120.6180.651
speciesBacteroides_sp_1_1_60.010.6560.69
speciesCollinsella_intestinalis-0.010.6580.69
speciesDesulfovibrio_desulfuricans0.010.6780.71
familyRikenellaceae0.0090.6850.714
genusAlistipes0.0090.6850.714
speciesParabacteroides_sp_D130.0090.7030.731
speciesLactobacillus_fermentum-0.0090.7090.735
genusSlackia0.0080.7230.748
familyPodoviridae-0.0080.7260.75
speciesLactobacillus_sanfranciscensis-0.0080.7290.751
speciesLachnospiraceae_bacterium_2_1_58FAA0.0080.7450.766
familyViruses_noname-0.0060.780.799
genusViruses_noname-0.0060.780.799
familyOxalobacteraceae-0.0060.7920.809
speciesEubacterium_eligens-0.0060.8120.828
genusClostridiales_noname0.0050.8190.832
speciesParabacteroides_sp_20_30.0050.820.832
speciesRoseburia_inulinivorans-0.0050.8340.845
speciesStreptococcus_anginosus-0.0020.9220.931
speciesSlackia_piriformis0.0020.9230.931
speciesBifidobacterium_angulatum-0.0020.9260.932
speciesPrevotella_bivia0.0010.9490.953
speciesBacteroides_barnesiae-0.0010.9510.953
speciesOscillibacter_sp_KLE_17280.0010.9540.954
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.04858443135570.06078535606050.000368140467233637221.4048
Type II diabetesDenmark752770.1400657953850.1080492754190.00038632319935221196.94595
Type II diabetesChina1831850.069820515290.05600200822150.0034592672815825488.42064
Crohns diseaseSpain17660.09599155764830.1323597627980.06505240952091241041.2635
Rheumatoid arthritisChina127980.09750184141110.08385923629120.0990887040525526817.5676
ObesityDenmark1691230.1105362607590.1034837069580.2450161364911269741.7513
Type II diabetesSweden53920.2344433463740.2017760387060.3058103628081051235.5977
Ulcerative colitisSpain78660.1192249472950.1323597627980.4192198996461724056.8714
Colorectal cancerAustria64350.2109431536630.2076249869190.7669019870072447182.7954
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382