MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-30 21:36:58 PST
Job id & description: 1664, EC34_3
Query type: protein
Count queries & homologs: 87, 60
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|A0A564USV1|A0A564USV1_9FIRM517521CompleteK01447COG0791unknownunknown100.0100.097.46
tr|A0A564USV1|A0A564USV1_9FIRM516652CompleteK01447COG0791unknownunknown100.0100.097.3
tr|A0A564USV1|A0A564USV1_9FIRM516604CompleteK01447COG0791unknownunknown100.0100.096.5
tr|A0A564USV1|A0A564USV1_9FIRM517803CompleteK01447COG0791unknownunknown100.0100.096.82
tr|A0A564USV1|A0A564USV1_9FIRM517109CompleteK01447COG0791unknownunknown100.0100.096.5
tr|A0A564USV1|A0A564USV1_9FIRM517640CompleteK01447COG0791unknownunknown100.0100.096.34
tr|A0A174CVK8|A0A174CVK8_9BACE584428Lack 5'-endK01423NOG120846BacteroidetesBacteroides100.097.6799.66
tr|A0A564TYF1|A0A564TYF1_9FIRM614395CompleteK01447COG0791FirmicutesClostridium100.099.8397.62
tr|A0A564TYF1|A0A564TYF1_9FIRM616324CompleteK01447COG0791FirmicutesClostridium100.0100.097.79
tr|A0A564TYF1|A0A564TYF1_9FIRM616212CompleteK01447COG0791FirmicutesClostridium100.0100.097.11
tr|A0A564TYF1|A0A564TYF1_9FIRM616354CompleteK01447COG0791FirmicutesClostridium100.0100.097.11
tr|A0A564TYF1|A0A564TYF1_9FIRM617966CompleteK01447COG0791FirmicutesClostridium100.0100.096.6
tr|A0A564USV1|A0A564USV1_9FIRM517077CompleteK01447COG0791unknownunknown100.0100.095.71
tr|A0A564USV1|A0A564USV1_9FIRM516586CompleteK01447COG0791unknownunknown100.0100.094.12
tr|A0A564USV1|A0A564USV1_9FIRM516459CompleteK01447COG0791unknownunknown100.0100.094.75
tr|A0A1C5YW32|A0A1C5YW32_9CLOT682927CompleteK01447COG0791FirmicutesRoseburia100.0100.097.71
tr|A0A564USV1|A0A564USV1_9FIRM517357CompleteK01447COG0791unknownunknown100.0100.095.71
tr|A0A564USV1|A0A564USV1_9FIRM517651CompleteK01447COG0791unknownunknown100.0100.096.34
tr|A0A564USV1|A0A564USV1_9FIRM516721CompleteK01447COG0791unknownunknown100.0100.096.18
tr|A0A564USV1|A0A564USV1_9FIRM517839CompleteK01447COG0791unknownunknown100.0100.095.55
tr|A0A174CVK8|A0A174CVK8_9BACE624084CompleteK01423NOG120846BacteroidetesBacteroides100.0100.092.67
tr|A0A564USV1|A0A564USV1_9FIRM514641CompleteK01447COG0791unknownunknown100.0100.092.86
tr|A0A564USV1|A0A564USV1_9FIRM516498CompleteK01447COG0791unknownunknown100.0100.095.23
tr|A0A564USV1|A0A564USV1_9FIRM516516CompleteK01447COG0791unknownunknown100.0100.096.34
tr|A0A174CVK8|A0A174CVK8_9BACE564548Lack 5'-endK01423NOG120846BacteroidetesBacteroides100.096.5590.14
tr|A0A174CVK8|A0A174CVK8_9BACE564582Lack 5'-endK01423NOG120846BacteroidetesBacteroides100.096.5590.65
tr|A0A564USV1|A0A564USV1_9FIRM543582CompleteK01447COG0791unknownunknown100.0100.090.14
tr|A0A174CVK8|A0A174CVK8_9BACE593666Lack 5'-endK01423NOG120846BacteroidetesBacteroides100.098.3389.12
tr|A0A564USV1|A0A564USV1_9FIRM526204CompleteK01447COG0791unknownunknown100.0100.093.32
tr|A0A564USV1|A0A564USV1_9FIRM800946Lack 5'-endK01447COG0791unknownunknown84.58100.097.18
tr|A0A174CVK8|A0A174CVK8_9BACE569808Lack 5'-endK01423NOG120846BacteroidetesBacteroides100.096.5489.44
tr|A0A174CVK8|A0A174CVK8_9BACE696025Lack 3'-endK01423NOG120846BacteroidetesBacteroides95.91100.090.96
tr|A0A174CVK8|A0A174CVK8_9BACE593616Lack 5'-endK01423NOG120846BacteroidetesBacteroides100.098.3386.73
tr|A0A174CVK8|A0A174CVK8_9BACE564533Lack both endsK01423NOG120846BacteroidetesBacteroides100.096.3985.88
tr|A0A564TYF1|A0A564TYF1_9FIRM630165CompleteK01447COG0791FirmicutesClostridium100.0100.092.87
tr|A0A564USV1|A0A564USV1_9FIRM538779CompleteK01447COG0791unknownunknown96.0397.4293.54
tr|A0A174CVK8|A0A174CVK8_9BACE767182CompleteK01423NOG120846Bacteroidetesunknown92.33100.091.88
tr|A0A564USV1|A0A564USV1_9FIRM515650CompleteK01447COG0791unknownunknown100.0100.087.48
tr|A0A564USV1|A0A564USV1_9FIRM514426CompleteK01447COG0791unknownunknown100.0100.086.05
tr|A0A564USV1|A0A564USV1_9FIRM517588CompleteK01447COG0791unknownunknown99.68100.087.78
tr|A0A564USV1|A0A564USV1_9FIRM651859Lack 5'-endK01447COG0791unknownunknown91.73100.092.56
tr|A0A564TYF1|A0A564TYF1_9FIRM775641Lack 3'-endunknownCOG0791FirmicutesClostridium92.36100.093.2
tr|A0A174CVK8|A0A174CVK8_9BACE994356CompleteK01423NOG120846BacteroidetesBacteroides83.13100.091.8
tr|A0A174CVK8|A0A174CVK8_9BACE1035222Lack both endsK01423NOG120846Bacteroidetesunknown82.28100.090.27
tr|A0A173SDE8|A0A173SDE8_9FIRM1302762CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.098.86
tr|A0A173SDE8|A0A173SDE8_9FIRM1302837CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.096.36
tr|A0A173SDE8|A0A173SDE8_9FIRM1302674CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.093.41
tr|A0A173SDE8|A0A173SDE8_9FIRM1271859Lack 5'-endK01308COG3409;COG2866FirmicutesRoseburia100.098.8890.68
tr|A0A564USV1|A0A564USV1_9FIRM793849Lack 3'-endunknownCOG0791unknownunknown83.1597.5783.94
tr|A0A1C6GQL8|A0A1C6GQL8_9FIRM2321368CompleteK01308COG2866unknownunknown100.0100.099.7
tr|A0A1C6H3I5|A0A1C6H3I5_9FIRM2303391CompleteK01308COG2866FirmicutesEubacterium100.0100.0100.0
tr|A0A4V0Z7F5|A0A4V0Z7F5_9FIRM2716605CompleteK01308COG2866unknownunknown92.75100.099.35
tr|A0A1C6L3K9|A0A1C6L3K9_9FIRM2627554Lack 5'-endK01308COG2866unknownunknown93.4199.6886.22
tr|A0A1C6HTF3|A0A1C6HTF3_9FIRM2924698CompleteK01308COG2866unknownunknown100.084.98100.0
tr|A0A173YI13|A0A173YI13_9FIRM3673029CompleteK13694COG0791FirmicutesMitsuokella100.0100.0100.0
tr|A0A173YI13|A0A173YI13_9FIRM3561024CompleteK13694COG0791FirmicutesMitsuokella100.097.6597.19
tr|A0A173YI13|A0A173YI13_9FIRM4072991Lack 3'-endK13694COG0791FirmicutesMitsuokella89.9697.3992.86
tr|Q8KKF8|Q8KKF8_9LACT4816484CompleteK13694COG0791FirmicutesLactococcus100.096.9597.38
tr|Q8KKF8|Q8KKF8_9LACT4816490CompleteK13694COG0791FirmicutesLactococcus100.096.9594.24
tr|A0A1C6L2J7|A0A1C6L2J7_9FIRM6638565CompleteK01448COG0739unknownunknown100.090.77100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyPrevotellaceae-0.3445.14e-532.43e-50
familyBacteroidaceae0.337.82e-491.23e-46
genusBacteroides0.337.82e-491.23e-46
speciesPrevotella_copri-0.3291.76e-482.08e-46
genusPrevotella-0.3178.19e-457.73e-43
speciesBacteroides_ovatus0.3145.43e-444.27e-42
speciesBacteroides_plebeius-0.2621.06e-307.15e-29
speciesClostridium_bolteae0.2131.17e-206.9e-19
speciesClostridiales_bacterium_1_7_47FAA0.2113.1e-201.63e-18
speciesBacteroides_thetaiotaomicron0.2096.76e-203.19e-18
genusParaprevotella-0.2037.92e-193.4e-17
speciesBacteroides_uniformis0.2021.09e-184.29e-17
speciesClostridium_symbiosum0.2011.68e-185.66e-17
speciesParaprevotella_unclassified-0.2011.68e-185.66e-17
speciesLachnospiraceae_bacterium_1_4_56FAA0.1986.23e-181.96e-16
speciesBacteroides_coprocola-0.1918.5e-172.51e-15
speciesClostridium_asparagiforme0.1891.65e-164.58e-15
familyClostridiales_noname0.1873.22e-168.44e-15
genusEggerthella0.1858.65e-162.15e-14
speciesEggerthella_unclassified0.1831.33e-153.14e-14
genusFlavonifractor0.1813.66e-157.85e-14
speciesFlavonifractor_plautii0.1813.66e-157.85e-14
speciesParaprevotella_clara-0.1796.33e-151.3e-13
speciesClostridium_hathewayi0.1788.12e-151.6e-13
speciesLachnospiraceae_bacterium_7_1_58FAA0.1788.75e-151.62e-13
speciesClostridium_clostridioforme0.1788.92e-151.62e-13
familyOscillospiraceae0.1789.6e-151.62e-13
genusOscillibacter0.1789.6e-151.62e-13
speciesParaprevotella_xylaniphila-0.1771.2e-141.95e-13
speciesAlistipes_senegalensis-0.1752.6e-144.09e-13
speciesRuminococcus_callidus-0.1657.03e-131.07e-11
speciesPrevotella_stercorea-0.1649.32e-131.37e-11
speciesOscillibacter_unclassified0.1631.14e-121.63e-11
genusEnterobacter-0.1631.43e-121.99e-11
speciesClostridium_leptum0.1621.62e-122.18e-11
genusClostridiales_noname0.1612.2e-122.88e-11
speciesEnterobacter_cloacae-0.1586.05e-127.72e-11
genusParabacteroides0.1586.73e-128.36e-11
speciesAnaerostipes_unclassified0.1586.97e-128.44e-11
orderPasteurellales-0.1533.21e-113.7e-10
familyPasteurellaceae-0.1533.21e-113.7e-10
genusHaemophilus-0.1524.04e-114.54e-10
speciesClostridium_citroniae0.1514.79e-115.26e-10
speciesHaemophilus_parainfluenzae-0.1515.49e-115.79e-10
speciesBlautia_producta0.1515.52e-115.79e-10
speciesDialister_invisus0.1481.21e-101.24e-09
speciesMegamonas_funiformis-0.1471.76e-101.74e-09
genusHoldemania0.1471.77e-101.74e-09
speciesDesulfovibrio_piger-0.1452.73e-102.63e-09
speciesEubacterium_eligens-0.1444.13e-103.9e-09
speciesKlebsiella_pneumoniae-0.1426.48e-106e-09
speciesEubacterium_biforme-0.1418.17e-107.42e-09
genusKlebsiella-0.1411.01e-098.99e-09
speciesMegamonas_unclassified-0.141.15e-091.01e-08
genusMegamonas-0.141.36e-091.17e-08
speciesBacteroides_fragilis0.1354.82e-094.06e-08
genusPhascolarctobacterium-0.1345.36e-094.36e-08
speciesPhascolarctobacterium_succinatutens-0.1345.36e-094.36e-08
speciesMegamonas_hypermegale-0.1345.6e-094.48e-08
familyPorphyromonadaceae0.1337.94e-096.25e-08
speciesBlautia_hydrogenotrophica0.1321.05e-088.12e-08
speciesClostridium_sp_L2_50-0.1321.12e-088.41e-08
genusClostridiaceae_noname0.1321.14e-088.41e-08
speciesClostridiaceae_bacterium_JC1180.1321.14e-088.41e-08
speciesBacteroides_xylanisolvens0.131.83e-081.33e-07
speciesEubacterium_sp_3_1_310.1292.19e-081.57e-07
speciesRuminococcus_gnavus0.1264.08e-082.87e-07
genusCoprobacillus0.1255.54e-083.85e-07
speciesLachnospiraceae_bacterium_5_1_57FAA0.1247.23e-084.95e-07
classGammaproteobacteria-0.1247.79e-085.25e-07
genusDesulfovibrio-0.1221.13e-077.51e-07
speciesErysipelotrichaceae_bacterium_6_1_450.1221.3e-078.52e-07
speciesClostridium_perfringens-0.1211.42e-079.18e-07
speciesCoprobacillus_unclassified0.1211.61e-071.03e-06
classNegativicutes-0.121.92e-071.19e-06
orderSelenomonadales-0.121.92e-071.19e-06
speciesFusobacterium_ulcerans0.122.01e-071.23e-06
speciesPeptostreptococcaceae_noname_unclassified-0.1192.74e-071.66e-06
speciesBacteroides_eggerthii-0.1183.06e-071.83e-06
speciesSubdoligranulum_sp_4_3_54A2FAA0.1173.76e-072.22e-06
speciesButyrivibrio_crossotus-0.1164.59e-072.67e-06
familyLactobacillaceae-0.1156.2e-073.57e-06
speciesLactobacillus_mucosae-0.1147.86e-074.44e-06
genusOxalobacter-0.1147.99e-074.44e-06
speciesOxalobacter_formigenes-0.1147.99e-074.44e-06
speciesLactobacillus_ruminis-0.1131e-065.49e-06
speciesCoprococcus_sp_ART55_1-0.1131.06e-065.75e-06
speciesWeissella_confusa-0.1121.11e-065.95e-06
genusLactobacillus-0.1121.18e-066.26e-06
genusCoprococcus-0.1121.29e-066.77e-06
familyClostridiaceae0.1111.42e-067.37e-06
familyAcidaminococcaceae-0.1111.49e-067.64e-06
speciesClostridium_ramosum0.1111.54e-067.82e-06
speciesEggerthella_lenta0.1111.58e-067.93e-06
speciesBacteroides_stercoris-0.111.78e-068.84e-06
genusClostridium0.1092.09e-061.03e-05
familyOxalobacteraceae-0.1092.25e-061.09e-05
speciesHoldemania_filiformis0.1082.96e-061.43e-05
genusCatenibacterium-0.1083.09e-061.46e-05
speciesCatenibacterium_mitsuokai-0.1083.09e-061.46e-05
orderEnterobacteriales-0.1073.44e-061.59e-05
familyEnterobacteriaceae-0.1073.44e-061.59e-05
speciesParabacteroides_unclassified0.1073.55e-061.63e-05
classMethanobacteria-0.1073.88e-061.73e-05
orderMethanobacteriales-0.1073.88e-061.73e-05
familyMethanobacteriaceae-0.1073.88e-061.73e-05
speciesMegasphaera_elsdenii-0.1064.12e-061.82e-05
speciesErysipelotrichaceae_bacterium_2_2_44A0.1064.21e-061.84e-05
speciesMethanobrevibacter_smithii-0.1064.59e-061.98e-05
genusPeptostreptococcaceae_noname-0.1064.63e-061.98e-05
speciesCitrobacter_freundii-0.1064.66e-061.98e-05
speciesEubacterium_dolichum0.1055.32e-062.24e-05
speciesBacteroides_salyersiae-0.1046.73e-062.81e-05
genusWeissella-0.1047.06e-062.92e-05
genusMethanobrevibacter-0.1037.58e-063.11e-05
classBacteroidia0.1037.9e-063.17e-05
orderBacteroidales0.1037.9e-063.17e-05
phylumBacteroidetes0.1037.92e-063.17e-05
familyPeptostreptococcaceae-0.1038.5e-063.37e-05
phylumEuryarchaeota-0.1038.92e-063.5e-05
speciesCitrobacter_unclassified-0.1028.97e-063.5e-05
speciesAnaerotruncus_colihominis0.1029.3e-063.6e-05
classBacilli-0.1029.61e-063.69e-05
genusMethanosphaera-0.1011.16e-054.38e-05
speciesMethanosphaera_stadtmanae-0.1011.16e-054.38e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1011.2e-054.5e-05
phylumProteobacteria-0.11.37e-055.09e-05
speciesDorea_longicatena-0.11.4e-055.16e-05
genusDialister0.0991.75e-056.4e-05
speciesBacteroides_finegoldii-0.0991.78e-056.46e-05
speciesBacteroides_coprophilus-0.0991.88e-056.77e-05
genusCitrobacter-0.0991.93e-056.9e-05
orderLactobacillales-0.0972.52e-058.94e-05
speciesRuminococcus_lactaris-0.0972.74e-059.65e-05
speciesDialister_succinatiphilus-0.0972.89e-050.000101
genusButyrivibrio-0.0944.55e-050.000158
speciesMethanobrevibacter_unclassified-0.0944.63e-050.00016
speciesOscillibacter_sp_KLE_17280.0935.57e-050.000191
phylumSynergistetes-0.0926.38e-050.000212
classSynergistia-0.0926.38e-050.000212
orderSynergistales-0.0926.38e-050.000212
familySynergistaceae-0.0926.38e-050.000212
speciesBacteroides_vulgatus0.0926.81e-050.000225
speciesMegamonas_rupellensis-0.0917.89e-050.000259
speciesEscherichia_unclassified-0.0918.15e-050.000265
speciesAcidaminococcus_fermentans-0.099.44e-050.000305
speciesBifidobacterium_pseudocatenulatum-0.090.0001010.000324
genusOlsenella-0.0890.0001110.000354
familyMicrococcaceae-0.0880.0001270.000402
genusBarnesiella-0.0880.0001290.000403
speciesBarnesiella_intestinihominis-0.0880.0001290.000403
genusRothia-0.0880.0001370.000425
speciesVeillonella_unclassified-0.0880.0001510.000466
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0870.0001740.000533
genusPyramidobacter-0.0870.0001770.000536
speciesPyramidobacter_piscolens-0.0870.0001770.000536
speciesOlsenella_unclassified-0.0860.0001880.000565
speciesWeissella_cibaria-0.0860.0001910.000571
genusFaecalibacterium-0.0860.0002050.000605
speciesFaecalibacterium_prausnitzii-0.0860.0002050.000605
genusMegasphaera-0.0850.000220.000645
speciesCoprococcus_catus-0.0850.0002250.000656
speciesOscillibacter_sp_KLE_17450.0850.0002370.000686
speciesErysipelotrichaceae_bacterium_21_30.0850.0002490.000717
speciesCoprococcus_eutactus-0.0840.0002760.00079
genusVeillonella-0.0840.0002850.00081
speciesParabacteroides_goldsteinii-0.0830.0003030.000856
speciesBacteroides_sp_2_1_220.0820.0003620.00102
familySiphoviridae0.0820.0003730.00104
speciesBifidobacterium_dentium-0.0810.0004410.00122
speciesBacteroides_clarus-0.0810.0004660.00129
speciesFusobacterium_mortiferum-0.080.0005180.00142
familySutterellaceae-0.080.0005780.00158
speciesErysipelotrichaceae_bacterium_3_1_530.0790.0006670.00181
speciesCollinsella_unclassified0.0780.0007760.00209
genusSutterellaceae_unclassified-0.0770.0009070.00241
speciesStreptococcus_salivarius-0.0770.000910.00241
speciesRothia_mucilaginosa-0.0770.0009140.00241
speciesRuminococcus_champanellensis-0.0770.0009150.00241
speciesMegasphaera_unclassified-0.0770.000920.00241
speciesClostridium_sp_ATCC_BAA_4420.0760.000980.00256
speciesFusobacterium_varium0.0760.001060.00275
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0750.00110.00284
speciesLactococcus_garvieae-0.0750.001210.00309
speciesBacteroides_faecis-0.0750.001210.00309
genusEscherichia-0.0740.001280.00325
orderCaudovirales0.0740.001310.00331
speciesCollinsella_aerofaciens-0.0740.001420.00357
familyLeuconostocaceae-0.0740.001430.00357
speciesLactobacillus_crispatus-0.0730.001470.00365
speciesBacteroides_caccae0.0730.001490.00368
speciesLactobacillus_sanfranciscensis-0.0730.001550.00381
speciesRoseburia_intestinalis0.0720.001780.00435
orderBurkholderiales-0.0720.001870.00455
speciesStreptococcus_thermophilus0.0710.0020.00484
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0710.002160.0052
speciesStreptococcus_gordonii-0.0710.002170.0052
speciesRuminococcus_sp_5_1_39BFAA0.070.002620.00625
orderBacillales-0.0690.002720.00645
speciesBifidobacterium_angulatum-0.0690.002940.00686
speciesVeillonella_parvula-0.0690.002940.00686
classBetaproteobacteria-0.0690.002950.00686
familyVeillonellaceae-0.0690.002950.00686
genusActinobacillus-0.0690.002990.00688
speciesActinobacillus_unclassified-0.0690.002990.00688
speciesRoseburia_hominis-0.0680.003220.00738
speciesEnterobacter_aerogenes-0.0680.003260.00743
familyBacillales_noname-0.0680.00350.0079
genusGemella-0.0680.00350.0079
speciesBacteroides_pectinophilus-0.0670.003850.00865
speciesStreptococcus_infantarius-0.0660.004290.0096
genusBlautia0.0660.004320.00962
speciesLeuconostoc_lactis-0.0660.004460.00988
speciesBacteroides_sp_1_1_60.0650.004670.0103
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familyBifidobacteriaceae-0.0650.004710.0103
genusAggregatibacter-0.0650.004820.0105
genusPseudoflavonifractor0.0650.0050.0108
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speciesBacteroides_massiliensis-0.0650.005020.0108
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genusC2likevirus0.0640.00580.0123
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speciesRuminococcus_obeum-0.0630.006410.0135
familyPropionibacteriaceae0.0630.006620.0139
speciesHoldemania_sp_AP20.0620.006870.0143
speciesClostridium_sp_KLE_17550.0620.007230.015
speciesPrevotella_bivia0.0620.007310.0151
speciesC2likevirus_unclassified0.0620.007390.0152
phylumFirmicutes-0.0620.007550.0155
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speciesParabacteroides_merdae-0.0610.007960.0162
speciesLactococcus_lactis0.0610.008160.0165
genusSiphoviridae_noname0.0610.008190.0165
speciesBacteroides_dorei0.0610.008840.0178
speciesLactobacillus_amylovorus-0.060.009350.0187
speciesEscherichia_coli-0.060.009690.0193
speciesMitsuokella_unclassified-0.0590.01030.0204
speciesRuminococcus_torques0.0590.01050.0207
speciesClostridium_bartlettii-0.0590.01110.0218
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speciesAlistipes_shahii-0.0580.01220.0238
speciesLachnospiraceae_bacterium_3_1_46FAA0.0580.01230.0238
speciesBifidobacterium_adolescentis-0.0580.01230.0238
speciesSutterella_wadsworthensis-0.0570.01350.026
genusMitsuokella-0.0570.01390.0267
speciesLachnospiraceae_bacterium_2_1_46FAA0.0570.0140.0268
familyRikenellaceae0.0570.01420.0269
genusAlistipes0.0570.01420.0269
genusPeptoniphilus0.0570.01430.027
speciesBacteroides_sp_3_1_19-0.0560.0150.0282
familyStreptococcaceae-0.0560.01610.0302
speciesAcidaminococcus_intestini-0.0560.01620.0302
genusCollinsella-0.0550.01670.031
genusDorea-0.0550.01680.0311
genusSubdoligranulum0.0550.0170.0313
speciesLachnospiraceae_bacterium_6_1_63FAA0.0530.02070.038
genusStreptococcus-0.0530.02110.0386
speciesCoprococcus_comes-0.0530.02220.0405
speciesAlistipes_sp_HGB50.0530.02260.041
speciesStreptococcus_australis-0.0530.02320.042
genusRuminococcaceae_noname0.0520.02440.0438
speciesRuminococcaceae_bacterium_D160.0520.02440.0438
speciesLactobacillus_oris-0.0520.02470.044
speciesStreptococcus_anginosus-0.0520.02470.044
speciesAggregatibacter_segnis-0.0520.02480.044
speciesSlackia_piriformis-0.0520.02540.0449
speciesPeptostreptococcus_anaerobius0.0520.02560.0451
genusSutterella-0.0510.0260.0456
genusCoprobacter-0.0510.02620.0456
speciesCoprobacter_fastidiosus-0.0510.02620.0456
genusAnaerostipes0.0510.02740.0475
speciesBilophila_unclassified0.0510.02780.0477
familyBacteroidales_noname-0.0510.02790.0477
genusBacteroidales_noname-0.0510.02790.0477
speciesBacteroidales_bacterium_ph8-0.0510.02790.0477
speciesLactobacillus_salivarius-0.0510.02820.0481
speciesLachnospiraceae_bacterium_2_1_58FAA0.0510.02880.0489
genusBilophila0.050.02930.0496
speciesAlistipes_indistinctus-0.050.03020.0509
phylumViruses_noname0.050.03160.0529
classViruses_noname0.050.03160.0529
speciesLactococcus_phage_P6800.0490.03260.0544
speciesKlebsiella_oxytoca-0.0490.03320.0552
speciesSubdoligranulum_unclassified0.0490.03350.0555
speciesPeptostreptococcus_stomatis-0.0490.03380.0558
speciesBacteroides_cellulosilyticus0.0490.03440.0566
speciesDesulfovibrio_desulfuricans-0.0490.03530.0579
genusButyricimonas-0.0490.03570.0581
speciesButyricimonas_synergistica-0.0490.03570.0581
speciesParabacteroides_johnsonii-0.0490.03590.0582
genusButyricicoccus0.0480.03750.0604
speciesButyricicoccus_pullicaecorum0.0480.03750.0604
speciesBilophila_wadsworthia0.0470.04150.0666
speciesEubacterium_limosum0.0460.0470.0752
speciesEnterococcus_faecalis-0.0460.04780.0762
speciesMitsuokella_multacida-0.0460.04910.078
speciesRoseburia_inulinivorans-0.0450.04980.0789
genusErysipelotrichaceae_noname-0.0450.05010.0791
speciesLactobacillus_vaginalis-0.0450.05040.0793
phylumActinobacteria-0.0450.05290.0827
classActinobacteria-0.0450.05290.0827
speciesEubacterium_siraeum-0.0430.06160.096
familyClostridiales_Family_XI_Incertae_Sedis0.0420.06670.104
orderAeromonadales-0.0420.0720.111
speciesBacteroides_intestinalis-0.0410.0740.114
speciesLactococcus_phage_bIL670.0410.07720.119
speciesRuminococcus_sp_JC304-0.040.08280.127
speciesPorphyromonas_asaccharolytica0.040.08350.128
speciesStreptococcus_mitis_oralis_pneumoniae-0.0390.09150.139
phylumVerrucomicrobia-0.0390.09280.139
classVerrucomicrobiae-0.0390.09280.139
orderVerrucomicrobiales-0.0390.09280.139
familyVerrucomicrobiaceae-0.0390.09280.139
genusAkkermansia-0.0390.09280.139
speciesAkkermansia_muciniphila-0.0390.09280.139
orderPseudomonadales-0.0390.09570.142
classEpsilonproteobacteria-0.0380.09850.146
orderCampylobacterales-0.0380.09850.146
speciesBacteroides_salanitronis-0.0380.1010.149
speciesVeillonella_dispar-0.0380.1030.151
speciesAcidaminococcus_unclassified0.0380.1040.152
speciesAlistipes_sp_AP110.0370.1090.159
genusAcidaminococcus-0.0370.1120.162
genusLachnospiraceae_noname0.0370.1120.162
speciesCollinsella_tanakaei-0.0370.1120.162
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0360.1170.169
genusProteus-0.0350.1330.191
speciesLactobacillus_fermentum-0.0340.1380.197
speciesBifidobacterium_catenulatum-0.0340.1380.197
genusSuccinatimonas-0.0340.1410.2
speciesSuccinatimonas_hippei-0.0340.1410.2
speciesCollinsella_intestinalis0.0340.1410.2
familyMyoviridae-0.0340.1460.205
genusPantoea-0.0340.1460.205
speciesPantoea_unclassified-0.0340.1460.205
speciesOdoribacter_splanchnicus-0.0340.1470.206
speciesLactobacillus_acidophilus0.0330.1490.208
speciesEubacterium_ramulus-0.0330.1520.212
speciesHaemophilus_sputorum-0.0320.1630.226
orderActinomycetales-0.0320.1670.23
speciesBifidobacterium_breve-0.0320.1670.23
speciesDorea_unclassified0.0320.1670.23
familyPodoviridae0.0320.1710.234
genusPorphyromonas0.0320.1710.234
speciesHoldemania_unclassified0.0320.1720.235
speciesBacteroides_barnesiae-0.0310.1750.238
familyCampylobacteraceae-0.0310.1820.247
speciesStreptococcus_lutetiensis-0.030.1920.26
familySuccinivibrionaceae-0.030.1950.262
genusOdoribacter-0.030.1950.262
genusCoriobacteriaceae_noname0.030.1960.263
genusPropionibacterium0.030.1980.265
speciesCoprobacillus_sp_D60.0290.2040.272
familyLachnospiraceae-0.0290.2050.273
speciesLactococcus_phage_phi70.0290.2070.274
speciesMegasphaera_micronuciformis-0.0280.2220.294
genusCampylobacter-0.0280.2230.294
speciesCoriobacteriaceae_bacterium_phI0.0280.2250.296
speciesLactobacillus_gasseri-0.0280.230.302
speciesParabacteroides_sp_20_3-0.0280.2340.305
speciesBifidobacterium_bifidum-0.0280.2340.305
speciesClostridium_nexile0.0270.2390.311
genusLactococcus0.0270.2420.314
speciesStreptococcus_sanguinis-0.0270.2490.322
speciesDorea_formicigenerans-0.0270.2510.324
speciesCampylobacter_concisus-0.0260.2540.327
speciesAnaerotruncus_unclassified-0.0260.2570.329
speciesEubacterium_hallii0.0260.2570.329
genusGordonibacter0.0260.2610.332
speciesGordonibacter_pamelaeae0.0260.2610.332
speciesEubacterium_ventriosum-0.0260.2650.336
speciesBifidobacterium_longum-0.0260.2660.337
speciesAlistipes_unclassified0.0250.2780.351
speciesKlebsiella_unclassified-0.0250.2850.358
speciesRuminococcus_bromii-0.0250.2850.358
genusEnterococcus-0.0250.2860.358
genusSlackia-0.0250.2880.36
speciesLactobacillus_reuteri-0.0250.2890.36
speciesCoprobacillus_sp_29_10.0240.3080.383
familyEnterococcaceae-0.0240.3090.383
speciesLactococcus_phage_936_sensu_lato0.0230.310.383
genusStaphylococcus-0.0230.3120.384
orderViruses_noname-0.0230.3130.384
speciesPropionibacterium_freudenreichii0.0230.3130.384
speciesBacteroides_sp_4_3_47FAA0.0230.3230.395
speciesEggerthella_sp_1_3_56FAA0.0230.3250.396
familyStaphylococcaceae-0.0230.3270.397
speciesGemella_morbillorum-0.0230.3270.397
speciesAlistipes_finegoldii-0.0230.3280.397
speciesAnaerostipes_hadrus-0.0220.3410.412
speciesClostridium_spiroforme0.0220.3430.413
genusRoseburia0.0220.3440.413
genusPeptostreptococcus-0.0220.3450.413
familyActinomycetaceae-0.0220.3460.413
speciesStreptococcus_pasteurianus-0.0220.3480.415
speciesLactobacillus_plantarum0.0220.3510.417
genusTunalikevirus-0.0220.3520.417
speciesOdoribacter_unclassified0.020.3910.463
speciesSutterella_parvirubra0.0190.40.472
speciesStreptococcus_phage_Sfi210.0190.4010.472
speciesLactobacillus_delbrueckii-0.0180.4250.499
speciesTuricibacter_sanguinis-0.0180.4310.505
genusSolobacterium-0.0180.4380.51
speciesSolobacterium_moorei-0.0180.4380.51
genusActinomyces-0.0180.4480.521
speciesFusobacterium_nucleatum-0.0170.4560.529
speciesLactococcus_phage_jm20.0170.4580.53
familyEubacteriaceae-0.0160.4940.57
genusMyoviridae_noname-0.0160.4960.571
genusEubacterium-0.0160.4980.572
speciesEnterococcus_faecium-0.0150.5040.575
classErysipelotrichia-0.0150.5060.575
orderErysipelotrichales-0.0150.5060.575
familyErysipelotrichaceae-0.0150.5060.575
speciesKlebsiella_phage_KP36-0.0150.5230.59
speciesKlebsiella_sp_MS_92_3-0.0150.5230.59
speciesAlistipes_putredinis-0.0150.5230.59
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0150.5240.59
genusFusobacterium-0.0150.5280.593
classDeltaproteobacteria0.0140.5390.6
orderDesulfovibrionales0.0140.5390.6
familyDesulfovibrionaceae0.0140.5390.6
speciesPorphyromonas_uenonis0.0140.5390.6
speciesParabacteroides_sp_D13-0.0140.5510.612
genusLambdalikevirus-0.0130.5670.628
genusLeuconostoc-0.0130.5770.636
speciesStreptococcus_parasanguinis-0.0130.5770.636
genusTuricibacter-0.0120.6130.674
speciesStreptococcus_mutans-0.0120.6140.674
familyRuminococcaceae-0.0110.6260.686
classClostridia-0.0110.6290.686
orderClostridiales-0.0110.6290.686
speciesTuricibacter_unclassified-0.0110.6390.695
genusAcidaminococcaceae_unclassified0.010.6570.713
speciesStreptococcus_vestibularis-0.010.6720.727
speciesProteus_mirabilis-0.0090.6830.736
speciesEubacterium_rectale-0.0090.6830.736
speciesParabacteroides_distasonis-0.0090.6930.745
speciesEubacterium_cylindroides-0.0090.7110.763
speciesRoseburia_unclassified0.0080.7270.778
familyFusobacteriaceae-0.0080.740.79
speciesBacteroides_nordii0.0070.7530.802
genusAnaerotruncus0.0070.7550.803
speciesBacteroides_oleiciplenus0.0060.7790.826
speciesLactobacillus_casei_paracasei0.0060.7850.83
speciesBifidobacterium_animalis-0.0060.7880.83
genusAdlercreutzia0.0060.790.83
speciesAdlercreutzia_equolifaciens0.0060.790.83
genusParasutterella-0.0060.7950.83
speciesParasutterella_excrementihominis-0.0060.7950.83
phylumFusobacteria-0.0060.7980.83
classFusobacteriia-0.0060.7980.83
orderFusobacteriales-0.0060.7980.83
familyBurkholderiales_noname0.0050.8140.844
speciesButyrivibrio_unclassified-0.0050.8320.86
orderCoriobacteriales0.0050.8370.86
familyCoriobacteriaceae0.0050.8370.86
genusMorganella-0.0050.8380.86
speciesMorganella_morganii-0.0050.8380.86
speciesLactobacillus_rhamnosus0.0050.840.86
genusRuminococcus0.0040.8460.864
genusBurkholderiales_noname0.0030.8840.899
speciesBurkholderiales_bacterium_1_1_470.0030.8840.899
genusParvimonas0.0030.8940.904
speciesBacteroides_fluxus-0.0030.8940.904
speciesParvimonas_unclassified0.0030.8940.904
speciesEnterobacteria_phage_HK544-0.0020.9230.931
speciesOdoribacter_laneus-0.0020.9370.943
familyViruses_noname0.0010.9730.975
genusViruses_noname0.0010.9730.975
speciesPrevotella_buccae0.0010.980.98
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.07141580592990.05978340415440.001921988318511553.79797
Type II diabetesDenmark752770.0801765598740.06689107957120.0261543073824572418.7629
Type II diabetesChina1831850.06981134847670.06286140213670.2203674826361395046.102
Crohns diseaseSpain17660.07065072317010.05944103005690.2812119251311884062.6434
Type II diabetesSweden53920.08360447331250.07790914745470.4800368645831569853.1595
Liver cirrhosisChina1201140.069427461480.065920418860.785386357572758292.6534
Rheumatoid arthritisChina127980.05408115054680.05847393766640.7938738686572476482.5825
Ulcerative colitisSpain78660.05753924315350.05944103005690.8282693055582633886.8839
Colorectal cancerAustria64350.06824556334190.06484007796870.9620548541152868797.0598
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382