MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-01-30 21:43:34 PST
Job id & description: 1667, EC34_5
Query type: protein
Count queries & homologs: 2, 5
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|A0A1C6INF1|A0A1C6INF1_9CLOT308702Lack 5'-endK01447COG0739Firmicutesunknown100.098.9497.46
tr|A0A1C6INF1|A0A1C6INF1_9CLOT304587CompleteK01447COG0739Firmicutesunknown100.0100.094.47
tr|A0A1C6IBE4|A0A1C6IBE4_9CLOT446055CompleteK01447COG0791unknownunknown100.0100.098.19
tr|A0A1C6INF1|A0A1C6INF1_9CLOT309274CompleteK01447bactNOG11867Firmicutesunknown100.0100.084.13
tr|A0A1C6INF1|A0A1C6INF1_9CLOT469252Lack 3'-endunknownCOG0739Firmicutesunknown87.28100.096.47
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_obeum0.5594.33e-1542.04e-151
genusDorea0.5375.65e-1401.33e-137
speciesEubacterium_hallii0.5134.44e-1266.99e-124
classClostridia0.4961.44e-1161.35e-114
orderClostridiales0.4961.44e-1161.35e-114
speciesDorea_longicatena0.4961.71e-1161.35e-114
orderCoriobacteriales0.4838.79e-1105.19e-108
familyCoriobacteriaceae0.4838.79e-1105.19e-108
classBacteroidia-0.4683.35e-1021.48e-100
orderBacteroidales-0.4683.35e-1021.48e-100
phylumBacteroidetes-0.4683.45e-1021.48e-100
speciesDorea_formicigenerans0.4622.2e-998.65e-98
phylumFirmicutes0.4588.82e-983.2e-96
speciesRuminococcus_sp_5_1_39BFAA0.4521.21e-944.08e-93
speciesCoprococcus_comes0.4422.06e-906.48e-89
speciesCoprococcus_catus0.4291.26e-843.72e-83
familyRuminococcaceae0.4185.2e-801.44e-78
speciesEubacterium_ramulus0.4185.91e-801.55e-78
phylumActinobacteria0.4121.58e-773.73e-76
classActinobacteria0.4121.58e-773.73e-76
familyLachnospiraceae0.4092.5e-765.41e-75
genusCoprococcus0.4092.52e-765.41e-75
speciesAnaerostipes_hadrus0.4071.77e-753.63e-74
speciesRuminococcus_torques0.4051.23e-742.42e-73
genusRuminococcus0.3991.79e-723.38e-71
speciesLachnospiraceae_bacterium_5_1_63FAA0.3876.6e-681.2e-66
genusBlautia0.3846.95e-671.21e-65
genusEubacterium0.3662.94e-604.92e-59
familyEubacteriaceae0.3663.02e-604.92e-59
genusAnaerostipes0.3536.2e-569.75e-55
genusAdlercreutzia0.3521.55e-552.29e-54
speciesAdlercreutzia_equolifaciens0.3521.55e-552.29e-54
genusCollinsella0.3461.41e-532.02e-52
speciesCollinsella_aerofaciens0.3451.66e-532.3e-52
familyBacteroidaceae-0.3347.09e-509.3e-49
genusBacteroides-0.3347.09e-509.3e-49
orderBifidobacteriales0.3137.78e-449.66e-43
familyBifidobacteriaceae0.3137.78e-449.66e-43
genusBifidobacterium0.3121.69e-432.05e-42
speciesEubacterium_rectale0.2971.79e-392.11e-38
speciesSubdoligranulum_unclassified0.2972.52e-392.9e-38
genusSubdoligranulum0.2956.08e-396.83e-38
speciesBifidobacterium_longum0.2956.31e-396.93e-38
genusLachnospiraceae_noname0.2764.6e-344.93e-33
speciesBifidobacterium_adolescentis0.271.14e-321.2e-31
genusGordonibacter0.2661.21e-311.22e-30
speciesGordonibacter_pamelaeae0.2661.21e-311.22e-30
speciesStreptococcus_thermophilus0.2595.88e-305.78e-29
genusParabacteroides-0.2531.26e-281.21e-27
speciesClostridium_leptum0.2441.17e-261.1e-25
familyActinomycetaceae0.2315.3e-244.91e-23
genusActinomyces0.2291.21e-231.1e-22
classErysipelotrichia0.2263.74e-233.21e-22
orderErysipelotrichales0.2263.74e-233.21e-22
familyErysipelotrichaceae0.2263.74e-233.21e-22
speciesBacteroides_thetaiotaomicron-0.2231.65e-221.39e-21
speciesEubacterium_siraeum0.226.87e-225.69e-21
speciesEubacterium_ventriosum0.2147.57e-216.16e-20
speciesRuminococcus_bromii0.2131.16e-209.28e-20
orderActinomycetales0.2098.05e-206.33e-19
speciesBacteroides_ovatus-0.2071.33e-191.03e-18
speciesBacteroides_xylanisolvens-0.2053.05e-192.32e-18
speciesEggerthella_lenta0.2011.65e-181.24e-17
speciesMethanobrevibacter_smithii0.22.33e-181.72e-17
phylumFusobacteria-0.1993.23e-182.28e-17
classFusobacteriia-0.1993.23e-182.28e-17
orderFusobacteriales-0.1993.23e-182.28e-17
genusMethanobrevibacter0.1993.34e-182.32e-17
familyFusobacteriaceae-0.1993.92e-182.68e-17
phylumEuryarchaeota0.1961.06e-177.15e-17
genusFusobacterium-0.1961.08e-177.18e-17
classMethanobacteria0.1951.53e-179.76e-17
orderMethanobacteriales0.1951.53e-179.76e-17
familyMethanobacteriaceae0.1951.53e-179.76e-17
familyStreptococcaceae0.1951.74e-171.1e-16
familyPorphyromonadaceae-0.1917.3e-174.53e-16
orderLactobacillales0.191.29e-167.91e-16
genusStreptococcus0.191.38e-168.35e-16
classBacilli0.1891.89e-161.13e-15
genusErysipelotrichaceae_noname0.1873.65e-162.15e-15
speciesLachnospiraceae_bacterium_3_1_46FAA0.1856.88e-164.01e-15
speciesPrevotella_buccae-0.1841.19e-156.85e-15
speciesHaemophilus_parainfluenzae-0.1796.77e-153.85e-14
genusHaemophilus-0.1789.13e-155.13e-14
speciesFusobacterium_ulcerans-0.1781.02e-145.66e-14
orderPasteurellales-0.1771.14e-146.18e-14
familyPasteurellaceae-0.1771.14e-146.18e-14
speciesRoseburia_hominis0.1761.64e-148.8e-14
speciesBlautia_hydrogenotrophica0.1762.09e-141.11e-13
familyPeptostreptococcaceae0.1743.48e-141.83e-13
speciesPropionibacterium_freudenreichii0.1735.65e-142.93e-13
speciesErysipelotrichaceae_bacterium_21_30.1691.62e-138.31e-13
speciesRuminococcus_lactaris0.1691.99e-131.01e-12
speciesMegasphaera_micronuciformis-0.1673.29e-131.65e-12
speciesLactobacillus_delbrueckii0.1673.32e-131.65e-12
genusPeptostreptococcaceae_noname0.1673.58e-131.76e-12
speciesTuricibacter_unclassified0.1665.69e-132.77e-12
genusHoldemania0.1648.28e-133.99e-12
genusTuricibacter0.1648.7e-134.13e-12
speciesBifidobacterium_animalis0.1648.75e-134.13e-12
genusPrevotella-0.163.33e-121.56e-11
speciesBacteroides_stercoris-0.1579.11e-124.22e-11
speciesBacteroides_fragilis-0.1579.97e-124.57e-11
phylumVerrucomicrobia0.1561.07e-114.63e-11
classVerrucomicrobiae0.1561.07e-114.63e-11
orderVerrucomicrobiales0.1561.07e-114.63e-11
familyVerrucomicrobiaceae0.1561.07e-114.63e-11
genusAkkermansia0.1561.07e-114.63e-11
speciesAkkermansia_muciniphila0.1561.07e-114.63e-11
speciesStreptococcus_salivarius0.1542.03e-118.71e-11
speciesErysipelotrichaceae_bacterium_6_1_450.1542.22e-119.44e-11
genusEggerthella0.1532.7e-111.14e-10
speciesTuricibacter_sanguinis0.1532.81e-111.17e-10
genusFaecalibacterium0.1533.33e-111.37e-10
speciesFaecalibacterium_prausnitzii0.1533.33e-111.37e-10
genusMegasphaera-0.1514.83e-111.97e-10
speciesOlsenella_unclassified0.1514.97e-112e-10
genusOlsenella0.1516e-112.4e-10
classBetaproteobacteria-0.156.98e-112.77e-10
genusSolobacterium0.1491.06e-104.13e-10
speciesSolobacterium_moorei0.1491.06e-104.13e-10
speciesKlebsiella_pneumoniae-0.1462.09e-108.09e-10
speciesClostridium_bartlettii0.1462.44e-109.36e-10
genusPropionibacterium0.1452.69e-101.02e-09
speciesStreptococcus_parasanguinis0.1452.96e-101.12e-09
phylumProteobacteria-0.1453.11e-101.17e-09
speciesPrevotella_copri-0.1444.44e-101.65e-09
speciesFusobacterium_varium-0.1434.91e-101.81e-09
speciesLactococcus_lactis0.1426.71e-102.44e-09
genusPseudoflavonifractor0.1426.77e-102.44e-09
speciesPseudoflavonifractor_capillosus0.1426.77e-102.44e-09
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1427.49e-102.68e-09
orderBurkholderiales-0.1427.91e-102.81e-09
speciesMethanobrevibacter_unclassified0.1418.03e-102.83e-09
speciesBacteroides_vulgatus-0.141.06e-093.71e-09
speciesClostridium_nexile-0.141.17e-094.06e-09
speciesFusobacterium_mortiferum-0.141.29e-094.41e-09
speciesAnaerotruncus_unclassified0.141.29e-094.41e-09
speciesLactobacillus_casei_paracasei0.141.33e-094.52e-09
speciesHoldemania_filiformis0.1391.57e-095.29e-09
familySutterellaceae-0.1391.74e-095.82e-09
genusKlebsiella-0.1382.36e-097.84e-09
speciesEubacterium_cylindroides0.1372.39e-097.89e-09
speciesEubacterium_biforme0.1372.74e-098.98e-09
familyBacillales_noname0.1372.93e-099.47e-09
genusGemella0.1372.93e-099.47e-09
speciesEggerthella_unclassified0.1363.2e-091.03e-08
genusLactococcus0.1363.99e-091.27e-08
speciesCampylobacter_concisus-0.1345.3e-091.68e-08
genusLeuconostoc0.1311.2e-083.78e-08
genusSiphoviridae_noname0.1282.51e-087.85e-08
speciesStreptococcus_sanguinis0.1282.6e-088.07e-08
orderBacillales0.1273.54e-081.09e-07
genusAnaerotruncus0.1274.04e-081.24e-07
speciesBifidobacterium_catenulatum0.1264.11e-081.25e-07
speciesEggerthella_sp_1_3_56FAA0.1264.2e-081.27e-07
speciesPrevotella_stercorea-0.1264.34e-081.3e-07
genusButyrivibrio0.1264.48e-081.34e-07
speciesRuminococcus_sp_JC3040.1255.3e-081.57e-07
genusRothia0.1246.63e-081.96e-07
speciesErysipelotrichaceae_bacterium_2_2_44A0.1247.6e-082.22e-07
familyMicrococcaceae0.1247.61e-082.22e-07
speciesLactobacillus_rhamnosus0.1248.11e-082.35e-07
speciesLachnospiraceae_bacterium_7_1_58FAA0.1231.05e-073.02e-07
speciesRothia_mucilaginosa0.1221.28e-073.66e-07
speciesLactococcus_phage_P6800.1221.31e-073.72e-07
speciesLactobacillus_salivarius-0.1211.71e-074.83e-07
genusRuminococcaceae_noname0.1192.72e-077.6e-07
speciesRuminococcaceae_bacterium_D160.1192.72e-077.6e-07
speciesParabacteroides_merdae-0.1182.97e-078.25e-07
familyBacteroidales_noname0.1183.45e-079.41e-07
genusBacteroidales_noname0.1183.45e-079.41e-07
speciesBacteroidales_bacterium_ph80.1183.45e-079.41e-07
genusBarnesiella0.1173.6e-079.71e-07
speciesBarnesiella_intestinihominis0.1173.6e-079.71e-07
speciesVeillonella_parvula-0.1173.7e-079.92e-07
speciesVeillonella_dispar-0.1155.58e-071.49e-06
familySiphoviridae0.1148.45e-072.24e-06
genusFlavonifractor-0.1138.76e-072.3e-06
speciesFlavonifractor_plautii-0.1138.76e-072.3e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1121.31e-063.42e-06
genusVeillonella-0.1111.63e-064.23e-06
phylumViruses_noname0.1092.09e-065.33e-06
classViruses_noname0.1092.09e-065.33e-06
speciesLactobacillus_mucosae-0.1092.09e-065.33e-06
speciesClostridiales_bacterium_1_7_47FAA-0.1092.25e-065.71e-06
familyPrevotellaceae-0.1092.45e-066.18e-06
classGammaproteobacteria-0.1073.24e-068.13e-06
speciesBifidobacterium_bifidum0.1064.38e-061.09e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.1055.72e-061.42e-05
genusMegamonas-0.1055.74e-061.42e-05
speciesMegamonas_unclassified-0.1046.4e-061.57e-05
speciesVeillonella_unclassified-0.1046.61e-061.62e-05
genusRoseburia0.1029.16e-062.23e-05
speciesRuminococcus_gnavus-0.1029.74e-062.36e-05
familyPropionibacteriaceae0.1011.2e-052.89e-05
speciesDorea_unclassified-0.1011.29e-053.09e-05
speciesPeptostreptococcaceae_noname_unclassified0.11.35e-053.22e-05
speciesClostridium_symbiosum-0.11.5e-053.56e-05
speciesEnterococcus_faecium0.11.55e-053.66e-05
familyLactobacillaceae0.0991.7e-053.99e-05
familyEnterococcaceae0.0972.53e-055.91e-05
speciesFusobacterium_nucleatum-0.0972.62e-056.09e-05
genusPantoea-0.0963.08e-057.08e-05
speciesPantoea_unclassified-0.0963.08e-057.08e-05
speciesButyrivibrio_unclassified0.0963.09e-057.08e-05
genusEnterococcus0.0953.8e-058.66e-05
speciesBacteroides_nordii-0.0954.16e-059.42e-05
speciesHoldemania_unclassified0.0954.17e-059.42e-05
familyVeillonellaceae-0.0945.07e-050.000114
genusLactobacillus0.0935.64e-050.000126
genusActinobacillus-0.0935.88e-050.00013
speciesActinobacillus_unclassified-0.0935.88e-050.00013
speciesCoprococcus_sp_ART55_10.0926.63e-050.000146
orderViruses_noname0.0917.67e-050.000168
familyLeuconostocaceae0.099.06e-050.000198
classEpsilonproteobacteria-0.0890.0001120.000242
orderCampylobacterales-0.0890.0001120.000242
genusCoprobacter0.0890.0001250.000268
speciesCoprobacter_fastidiosus0.0890.0001250.000268
speciesClostridium_bolteae-0.0880.0001270.000271
genusParasutterella-0.0880.0001350.000284
speciesStreptococcus_mutans0.0880.0001350.000284
speciesParasutterella_excrementihominis-0.0880.0001350.000284
genusCampylobacter-0.0880.0001450.000304
genusPhascolarctobacterium0.0870.0001570.000326
speciesPhascolarctobacterium_succinatutens0.0870.0001570.000326
genusMitsuokella0.0860.0001830.000379
familyCampylobacteraceae-0.0860.0001960.000404
speciesOdoribacter_laneus0.0830.0003030.000622
speciesBacteroides_oleiciplenus-0.0830.0003220.000658
speciesClostridium_hathewayi-0.0830.0003370.000686
speciesBacteroides_faecis-0.0830.0003450.000699
orderCaudovirales0.0830.000350.000706
speciesLactobacillus_acidophilus0.0820.0003610.000725
speciesStreptococcus_vestibularis0.0820.0003710.000742
genusPeptostreptococcus0.0820.0003740.000745
speciesHaemophilus_paraphrohaemolyticus-0.0820.0003960.000781
speciesVeillonella_atypica-0.0820.0003970.000781
speciesMegamonas_rupellensis-0.0820.0003980.000781
genusAggregatibacter-0.0820.0003990.000781
speciesAnaerostipes_unclassified-0.0810.0004220.000823
speciesMitsuokella_unclassified0.080.000540.00105
speciesRoseburia_intestinalis0.080.0005570.00108
speciesMegamonas_funiformis-0.0790.0006060.00117
speciesOscillibacter_sp_KLE_1728-0.0790.0006250.0012
genusParvimonas0.0780.0007340.0014
genusCoriobacteriaceae_noname0.0780.0007470.00142
speciesParvimonas_unclassified0.0780.0007510.00142
speciesMegasphaera_unclassified-0.0780.0007690.00145
speciesAlistipes_senegalensis0.0770.0008090.00152
speciesPeptostreptococcus_anaerobius0.0770.0008160.00153
speciesLachnospiraceae_bacterium_1_4_56FAA0.0770.0008240.00154
genusClostridiales_noname-0.0770.0008810.00164
speciesParabacteroides_distasonis-0.0770.0009160.0017
speciesCoriobacteriaceae_bacterium_phI0.0760.0009350.00172
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0760.0009410.00173
speciesGemella_morbillorum0.0760.001010.00185
genusDialister0.0760.001020.00185
speciesSubdoligranulum_sp_4_3_54A2FAA0.0760.001020.00185
speciesBacteroides_plebeius-0.0760.001040.00188
classNegativicutes-0.0750.001150.00206
orderSelenomonadales-0.0750.001150.00206
orderPseudomonadales0.0750.001180.00211
speciesMegamonas_hypermegale-0.0750.001190.00212
speciesStreptococcus_pasteurianus-0.0740.001310.00232
genusPeptoniphilus0.0740.001430.00253
speciesEubacterium_eligens0.0740.001450.00255
speciesCoprococcus_eutactus0.0730.001480.0026
speciesOdoribacter_unclassified0.0730.00170.00297
speciesStreptococcus_australis0.0720.001810.00315
speciesClostridium_clostridioforme-0.0720.001850.00321
speciesStreptococcus_mitis_oralis_pneumoniae0.070.00230.00398
familyClostridiales_noname-0.0690.002680.00462
speciesOdoribacter_splanchnicus-0.0690.002770.00475
speciesRoseburia_inulinivorans0.0680.003240.00554
speciesBacteroides_finegoldii-0.0680.003340.00569
speciesLactobacillus_plantarum0.0670.003510.00596
familyRikenellaceae-0.0670.003720.00627
genusAlistipes-0.0670.003720.00627
speciesRuminococcus_callidus0.0670.003760.00632
genusPorphyromonas0.0670.003780.00632
orderEnterobacteriales-0.0670.00380.00632
familyEnterobacteriaceae-0.0670.00380.00632
familyBurkholderiales_noname-0.0660.004330.00717
speciesAcidaminococcus_fermentans-0.0660.004450.00734
genusBurkholderiales_noname-0.0650.004670.00765
speciesBurkholderiales_bacterium_1_1_47-0.0650.004670.00765
genusMethanosphaera0.0650.004930.00802
speciesMethanosphaera_stadtmanae0.0650.004930.00802
speciesMegasphaera_elsdenii-0.0640.005310.00861
speciesAggregatibacter_segnis-0.0640.005720.00925
speciesDialister_invisus0.0630.006530.0105
genusPyramidobacter-0.0630.006730.0108
speciesPyramidobacter_piscolens-0.0630.006730.0108
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0620.006920.011
speciesButyrivibrio_crossotus0.0620.007070.0112
genusSutterellaceae_unclassified-0.0620.007480.0118
genusParaprevotella0.0610.008320.0131
speciesParaprevotella_unclassified0.060.008910.014
speciesParabacteroides_unclassified-0.060.009580.015
speciesEscherichia_coli-0.0590.01010.0158
speciesAlistipes_indistinctus0.0590.01040.0162
speciesClostridium_citroniae-0.0590.01130.0175
speciesBacteroides_intestinalis-0.0590.01130.0175
speciesBacteroides_caccae-0.0580.0120.0185
phylumSynergistetes-0.0580.01220.0186
classSynergistia-0.0580.01220.0186
orderSynergistales-0.0580.01220.0186
familySynergistaceae-0.0580.01220.0186
genusEscherichia-0.0570.01350.0205
speciesClostridium_sp_L2_500.0570.01380.0209
speciesBacteroides_uniformis-0.0560.0150.0226
speciesPorphyromonas_asaccharolytica0.0560.01510.0227
speciesStreptococcus_infantarius-0.0560.01530.0229
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0560.01580.0236
speciesClostridium_perfringens-0.0560.01620.0241
speciesAcidaminococcus_intestini-0.0560.01640.0243
speciesEnterobacter_cloacae-0.0550.0170.0252
speciesAlistipes_sp_AP110.0550.01750.0258
speciesKlebsiella_unclassified-0.0550.01820.0268
speciesBacteroides_pectinophilus0.0540.01890.0277
genusOdoribacter-0.0540.02030.0297
genusButyricimonas-0.0530.0230.0334
speciesButyricimonas_synergistica-0.0530.0230.0334
speciesC2likevirus_unclassified0.0520.02450.0355
genusC2likevirus0.0520.02560.037
speciesClostridium_spiroforme0.0520.02570.037
speciesLachnospiraceae_bacterium_8_1_57FAA0.0510.0260.0373
familyStaphylococcaceae0.0510.02750.0393
orderAeromonadales-0.0510.02760.0394
speciesParabacteroides_goldsteinii-0.050.03050.0434
speciesCoprobacillus_sp_D60.050.03150.0446
speciesAlistipes_unclassified0.050.03180.0449
genusEnterobacter-0.0480.03730.0526
familyMyoviridae-0.0480.03750.0527
genusMorganella-0.0460.04510.063
speciesMorganella_morganii-0.0460.04510.063
familyOxalobacteraceae0.0460.04610.0642
genusProteus-0.0460.04910.0682
genusCatenibacterium0.0450.05230.0722
speciesCatenibacterium_mitsuokai0.0450.05230.0722
speciesBacteroides_sp_3_1_19-0.0450.05360.0738
genusStaphylococcus0.0440.05650.0775
speciesParaprevotella_clara0.0440.0590.0807
genusAcidaminococcus-0.0430.06160.084
speciesStreptococcus_phage_Sfi210.0430.06270.0853
speciesBacteroides_salyersiae-0.0420.06850.0929
speciesStreptococcus_gordonii0.0420.06960.0941
speciesLactobacillus_gasseri0.0420.07050.0951
speciesLactobacillus_crispatus-0.0410.07490.101
genusOxalobacter0.0410.07630.102
speciesOxalobacter_formigenes0.0410.07630.102
speciesEubacterium_limosum0.040.08530.114
speciesAlistipes_putredinis-0.0390.090.12
speciesEnterococcus_faecalis0.0390.09320.124
speciesAnaerotruncus_colihominis0.0380.09940.131
speciesRuminococcus_champanellensis0.0380.1040.137
speciesLactococcus_phage_jm20.0370.1060.139
speciesCollinsella_unclassified-0.0370.1090.143
speciesDialister_succinatiphilus0.0370.1110.145
speciesPeptostreptococcus_stomatis0.0370.1130.147
speciesBifidobacterium_dentium0.0360.1230.16
familyAcidaminococcaceae0.0360.1240.161
speciesHaemophilus_sputorum-0.0340.1430.185
speciesLactococcus_phage_bIL670.0340.1450.187
speciesSlackia_piriformis0.0320.1630.21
speciesCollinsella_tanakaei-0.0320.1640.21
speciesClostridium_ramosum-0.0320.1720.22
speciesBacteroides_coprophilus-0.0320.1730.221
speciesStreptococcus_anginosus0.0310.1760.224
speciesLactococcus_phage_phi70.0310.1810.23
speciesParaprevotella_xylaniphila0.0310.1820.23
speciesBifidobacterium_breve-0.030.1890.239
speciesOscillibacter_sp_KLE_1745-0.030.1930.243
speciesBacteroides_dorei-0.030.1990.25
speciesAlistipes_onderdonkii0.030.2010.252
speciesProteus_mirabilis-0.0290.2110.263
genusSuccinatimonas-0.0280.2210.275
speciesSuccinatimonas_hippei-0.0280.2210.275
speciesPorphyromonas_uenonis0.0270.2390.295
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0270.2390.295
speciesErysipelotrichaceae_bacterium_3_1_530.0270.2470.304
speciesCollinsella_intestinalis-0.0260.2570.316
speciesClostridium_sp_ATCC_BAA_442-0.0260.2690.33
speciesHoldemania_sp_AP20.0250.2740.335
genusSlackia0.0250.2750.335
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0250.2770.337
speciesEubacterium_sp_3_1_310.0250.2780.337
speciesCoprobacillus_unclassified-0.0250.2790.338
speciesLactobacillus_oris-0.0250.2840.343
speciesCitrobacter_unclassified-0.0240.2920.352
speciesBacteroides_coprocola-0.0240.2950.354
speciesBacteroides_sp_1_1_6-0.0240.2960.355
familySuccinivibrionaceae-0.0240.3050.364
speciesDesulfovibrio_desulfuricans-0.0240.3060.365
speciesBilophila_unclassified-0.0230.3110.37
speciesEnterobacteria_phage_HK544-0.0230.3190.378
familyViruses_noname0.0220.3330.393
genusViruses_noname0.0220.3330.393
speciesWeissella_confusa-0.0220.340.399
speciesDesulfovibrio_piger0.0220.340.399
speciesClostridium_asparagiforme-0.0220.3440.403
genusCitrobacter-0.0220.3520.411
familyClostridiaceae-0.0210.360.419
speciesAlistipes_shahii-0.0210.360.419
speciesLactobacillus_sanfranciscensis0.0210.3620.42
speciesCitrobacter_freundii-0.0210.3650.422
genusClostridiaceae_noname-0.020.3780.435
speciesClostridiaceae_bacterium_JC118-0.020.3780.435
genusBilophila-0.020.3890.447
genusClostridium-0.020.3950.453
familyPodoviridae-0.020.3970.453
speciesLactococcus_phage_936_sensu_lato0.020.3970.453
genusMyoviridae_noname-0.0190.4140.471
speciesLachnospiraceae_bacterium_5_1_57FAA0.0190.4180.474
speciesBacteroides_massiliensis-0.0190.4190.474
speciesLeuconostoc_lactis0.0180.4320.488
speciesParabacteroides_sp_20_30.0170.4680.527
speciesLactobacillus_amylovorus0.0160.4780.537
speciesEubacterium_dolichum-0.0160.4950.555
classDeltaproteobacteria-0.0150.5140.572
orderDesulfovibrionales-0.0150.5140.572
familyDesulfovibrionaceae-0.0150.5140.572
speciesLactobacillus_reuteri0.0150.5250.583
genusCoprobacillus-0.0140.540.598
speciesBacteroides_fluxus0.0140.5410.598
speciesWeissella_cibaria0.0140.550.607
speciesAcidaminococcus_unclassified0.0140.5540.61
speciesPrevotella_bivia0.0130.5620.617
speciesEnterobacter_aerogenes-0.0130.5680.622
speciesBifidobacterium_pseudocatenulatum-0.0130.5850.639
genusAcidaminococcaceae_unclassified-0.0120.5940.646
speciesBacteroides_eggerthii-0.0120.5940.646
speciesBacteroides_sp_2_1_22-0.0120.5980.649
speciesAlistipes_finegoldii0.0120.6060.656
speciesBacteroides_salanitronis0.0120.610.659
genusLambdalikevirus0.0110.6230.671
speciesBacteroides_barnesiae-0.0110.6350.683
speciesEscherichia_unclassified0.010.6590.707
speciesLactococcus_garvieae-0.0090.6960.744
speciesClostridium_sp_KLE_17550.0090.6970.744
speciesBlautia_producta0.0090.7020.748
speciesBacteroides_clarus0.0090.7070.752
genusWeissella-0.0090.7130.756
speciesKlebsiella_oxytoca0.0080.7160.758
speciesParabacteroides_sp_D13-0.0080.7290.77
speciesLactobacillus_ruminis-0.0070.7620.803
genusDesulfovibrio0.0070.7710.81
speciesAlistipes_sp_HGB50.0070.7720.81
speciesKlebsiella_phage_KP36-0.0060.7930.83
speciesBacteroides_cellulosilyticus-0.0060.8040.84
speciesRoseburia_unclassified0.0050.8380.871
speciesKlebsiella_sp_MS_92_30.0050.8390.871
speciesCoprobacillus_sp_29_1-0.0050.840.871
speciesOscillibacter_unclassified0.0040.8470.877
speciesLactobacillus_vaginalis-0.0040.8540.882
speciesSutterella_parvirubra-0.0040.8650.889
familyOscillospiraceae-0.0040.8660.889
genusOscillibacter-0.0040.8660.889
genusTunalikevirus0.0040.880.901
speciesParabacteroides_johnsonii0.0030.8820.901
speciesLactobacillus_fermentum0.0030.8980.915
speciesSutterella_wadsworthensis0.0030.9020.918
genusSutterella-0.0020.9350.949
speciesMitsuokella_multacida0.0020.9440.956
speciesBilophila_wadsworthia-0.0010.950.96
speciesBifidobacterium_angulatum0.0010.9520.96
genusButyricicoccus0.00.9920.995
speciesButyricicoccus_pullicaecorum0.00.9920.995
speciesBacteroides_sp_4_3_47FAA0.00.9930.995
speciesStreptococcus_lutetiensis0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.007593867556830.01074189882556.54308220677e-0819826.65793
Colorectal cancerAustria64350.03701720164130.06118290186340.020132888874713184.45933
Type II diabetesSweden53920.03220357232910.03694096128720.059203587175620977.10125
Rheumatoid arthritisChina127980.0267441628060.01785316681640.134001444626671622.3964
Ulcerative colitisSpain78660.01758765127040.02055429227240.20389168881079035.5941
Type II diabetesDenmark752770.01471285161540.01333305392080.3491663620371697455.6397
Crohns diseaseSpain17660.01490196097790.02055429227240.3577672177622068168.7648
Type II diabetesChina1831850.01070292803060.009738998591560.4455130161011982265.5078
ObesityDenmark1691230.0129227807650.01379923203220.6239727371962218572.9506
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382