MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-02 01:53:16 PST
Job id & description: 1668, BCAA
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 60%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
BCAA1635603CompleteK00837COG1167unknownunknown99.4998.2562.44
BCAA1697979CompleteK00837COG1167Firmicutesunknown98.7498.9860.46
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusPeptostreptococcaceae_noname0.6381.33e-2146.28e-212
familyPeptostreptococcaceae0.6321.81e-2094.27e-207
speciesPeptostreptococcaceae_noname_unclassified0.5138.51e-1261.34e-123
speciesClostridium_bartlettii0.4622.16e-992.55e-97
classBacilli0.3175.71e-455.39e-43
familyStreptococcaceae0.3137.19e-445.66e-42
orderLactobacillales0.315.11e-433.45e-41
genusStreptococcus0.317.49e-434.42e-41
speciesStreptococcus_salivarius0.291.71e-378.97e-36
speciesRuminococcus_obeum0.286.28e-352.96e-33
speciesStreptococcus_australis0.2724.02e-331.72e-31
genusTuricibacter0.2725.16e-332.03e-31
speciesTuricibacter_sanguinis0.271.62e-325.88e-31
phylumBacteroidetes-0.2678.15e-322.45e-30
classBacteroidia-0.2678.29e-322.45e-30
orderBacteroidales-0.2678.29e-322.45e-30
speciesTuricibacter_unclassified0.2594.48e-301.24e-28
speciesBifidobacterium_longum0.2456.22e-271.63e-25
familyLachnospiraceae0.2431.72e-264.27e-25
phylumActinobacteria0.2391.15e-252.58e-24
classActinobacteria0.2391.15e-252.58e-24
phylumFirmicutes0.2372.66e-255.71e-24
genusBifidobacterium0.2363.62e-257.14e-24
orderBifidobacteriales0.2363.78e-257.14e-24
familyBifidobacteriaceae0.2363.78e-257.14e-24
genusParabacteroides-0.2291.13e-232.05e-22
familyPorphyromonadaceae-0.2281.66e-232.9e-22
genusBlautia0.2264.34e-237.32e-22
speciesClostridium_perfringens0.2256.34e-239.85e-22
speciesStreptococcus_sanguinis0.2256.46e-239.85e-22
orderClostridiales0.2256.67e-239.85e-22
classClostridia0.2256.68e-239.85e-22
genusDorea0.2232.04e-222.92e-21
speciesRuminococcus_sp_5_1_39BFAA0.225.63e-227.82e-21
speciesDorea_formicigenerans0.2162.98e-214.02e-20
speciesLachnospiraceae_bacterium_5_1_63FAA0.2164.3e-215.64e-20
speciesEubacterium_hallii0.2155.52e-217.04e-20
genusSolobacterium0.2148.39e-211.02e-19
speciesSolobacterium_moorei0.2148.39e-211.02e-19
orderBacillales0.2113.56e-204.2e-19
genusRuminococcus0.214.44e-205.11e-19
familyBacillales_noname0.2062.17e-192.38e-18
genusGemella0.2062.17e-192.38e-18
familyOscillospiraceae-0.2039.31e-199.77e-18
genusOscillibacter-0.2039.31e-199.77e-18
speciesCoprococcus_comes0.2011.68e-181.72e-17
speciesOscillibacter_unclassified-0.22.58e-182.59e-17
speciesAnaerostipes_hadrus0.1942.32e-172.28e-16
orderActinomycetales0.1933.42e-173.29e-16
familyLactobacillaceae0.1916.66e-176.29e-16
speciesHaemophilus_parainfluenzae0.1917.65e-177.08e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.1918.31e-177.54e-16
genusHaemophilus0.1919.27e-178.26e-16
orderPasteurellales0.1882.15e-161.85e-15
familyPasteurellaceae0.1882.15e-161.85e-15
orderCoriobacteriales0.1882.51e-162.08e-15
familyCoriobacteriaceae0.1882.51e-162.08e-15
familyActinomycetaceae0.1873.57e-162.91e-15
familyLeuconostocaceae0.1864.56e-163.65e-15
familyRikenellaceae-0.1865.84e-164.52e-15
genusAlistipes-0.1865.84e-164.52e-15
genusLactobacillus0.1849.21e-167.01e-15
genusActinomyces0.1849.4e-167.04e-15
speciesCoprococcus_catus0.1841.11e-158.19e-15
speciesDorea_longicatena0.1831.53e-151.11e-14
familyBacteroidaceae-0.1831.65e-151.16e-14
genusBacteroides-0.1831.65e-151.16e-14
genusAnaerostipes0.185.19e-153.6e-14
speciesOdoribacter_splanchnicus-0.1795.7e-153.9e-14
genusOdoribacter-0.1788.22e-155.54e-14
speciesStreptococcus_anginosus0.1752.32e-141.54e-13
genusAdlercreutzia0.1752.55e-141.65e-13
speciesAdlercreutzia_equolifaciens0.1752.55e-141.65e-13
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1744.14e-142.62e-13
speciesBacteroides_uniformis-0.1744.16e-142.62e-13
speciesRuminococcus_callidus0.1727.95e-144.94e-13
genusLachnospiraceae_noname0.1711.11e-136.8e-13
speciesStreptococcus_parasanguinis0.1692.05e-131.24e-12
familyRuminococcaceae0.1673.14e-131.88e-12
genusCoprococcus0.1665.07e-132.99e-12
familyEnterococcaceae0.1665.13e-132.99e-12
speciesBifidobacterium_pseudocatenulatum0.1665.85e-133.37e-12
speciesEubacterium_ventriosum0.1641.11e-126.31e-12
speciesStreptococcus_gordonii0.1631.29e-127.25e-12
genusEnterococcus0.1621.58e-128.77e-12
speciesLachnospiraceae_bacterium_1_1_57FAA0.1621.92e-121.05e-11
speciesStreptococcus_thermophilus0.1612.5e-121.36e-11
speciesVeillonella_parvula0.1585.99e-123.21e-11
genusKlebsiella0.1561.33e-117.05e-11
speciesEubacterium_ramulus0.1541.89e-119.91e-11
genusEnterobacter0.1533e-111.56e-10
speciesBifidobacterium_dentium0.1524.4e-112.26e-10
genusFaecalibacterium0.1515.04e-112.53e-10
speciesFaecalibacterium_prausnitzii0.1515.04e-112.53e-10
speciesBifidobacterium_bifidum0.1491.02e-105.07e-10
genusVeillonella0.1481.33e-106.54e-10
genusCitrobacter0.1481.36e-106.62e-10
speciesEnterococcus_faecium0.1471.58e-107.61e-10
speciesCitrobacter_unclassified0.1471.66e-107.91e-10
familyEubacteriaceae0.1462.17e-101.02e-09
genusEubacterium0.1462.34e-101.09e-09
speciesCollinsella_aerofaciens0.1427.95e-103.68e-09
speciesEnterobacter_cloacae0.1418.25e-103.78e-09
genusLactococcus0.1418.73e-103.96e-09
genusLeuconostoc0.1419.69e-104.36e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1419.89e-104.4e-09
genusPeptostreptococcus0.1411.04e-094.59e-09
speciesRoseburia_intestinalis0.141.33e-095.81e-09
speciesKlebsiella_oxytoca0.1391.61e-096.97e-09
speciesRuminococcus_torques0.1391.73e-097.42e-09
genusWeissella0.1381.94e-098.25e-09
speciesCitrobacter_freundii0.1354.65e-091.96e-08
speciesRuminococcus_bromii0.1354.87e-092.03e-08
genusCollinsella0.1346.62e-092.74e-08
speciesParvimonas_unclassified0.1321.13e-084.64e-08
genusParvimonas0.1321.14e-084.64e-08
genusRoseburia0.1311.29e-085.2e-08
speciesPeptostreptococcus_stomatis0.131.51e-086.04e-08
speciesRuminococcus_sp_JC3040.1292.03e-088.05e-08
speciesLactobacillus_delbrueckii0.1292.28e-088.97e-08
genusRothia0.1256.61e-082.56e-07
familyMicrococcaceae0.1246.62e-082.56e-07
speciesBifidobacterium_animalis0.1246.83e-082.62e-07
speciesLactococcus_lactis0.1247.86e-082.99e-07
classGammaproteobacteria0.1238.88e-083.35e-07
speciesKlebsiella_pneumoniae0.1211.45e-075.43e-07
speciesRoseburia_inulinivorans0.1192.21e-078.21e-07
speciesVeillonella_unclassified0.1192.7e-079.96e-07
speciesRothia_mucilaginosa0.1183.01e-071.1e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1173.75e-071.36e-06
speciesAlistipes_finegoldii-0.1174.19e-071.51e-06
speciesBacteroides_cellulosilyticus-0.1174.34e-071.55e-06
genusGordonibacter0.1164.84e-071.7e-06
speciesGordonibacter_pamelaeae0.1164.84e-071.7e-06
speciesEubacterium_eligens0.1121.17e-064.09e-06
speciesLactobacillus_mucosae0.1121.28e-064.44e-06
speciesAlistipes_onderdonkii-0.1111.5e-065.17e-06
speciesHaemophilus_sputorum0.1092.29e-067.83e-06
genusPropionibacterium0.1082.61e-068.86e-06
speciesAlistipes_shahii-0.1082.67e-069e-06
speciesClostridium_asparagiforme-0.1082.71e-069.07e-06
speciesBacteroides_thetaiotaomicron-0.1073.26e-061.08e-05
speciesWeissella_confusa0.1063.99e-061.32e-05
speciesWeissella_cibaria0.1064.59e-061.5e-05
genusDesulfovibrio-0.1055.21e-061.7e-05
speciesStreptococcus_vestibularis0.1055.34e-061.73e-05
speciesEnterococcus_faecalis0.1055.7e-061.83e-05
speciesLactobacillus_salivarius0.1046.35e-062.03e-05
genusAnaerotruncus-0.1037.61e-062.41e-05
speciesLactobacillus_sanfranciscensis0.1038.3e-062.61e-05
familySutterellaceae-0.1038.43e-062.64e-05
speciesParabacteroides_unclassified-0.1029.79e-063.04e-05
classBetaproteobacteria-0.1021.04e-053.21e-05
speciesLactobacillus_casei_paracasei0.1011.16e-053.56e-05
orderEnterobacteriales0.1011.24e-053.75e-05
familyEnterobacteriaceae0.1011.24e-053.75e-05
genusRuminococcaceae_noname-0.11.58e-054.72e-05
speciesRuminococcaceae_bacterium_D16-0.11.58e-054.72e-05
speciesVeillonella_atypica0.11.61e-054.78e-05
speciesClostridium_clostridioforme-0.0991.72e-055.07e-05
orderBurkholderiales-0.0991.95e-055.72e-05
speciesGemella_morbillorum0.0982.23e-056.5e-05
genusPseudoflavonifractor-0.0982.39e-056.88e-05
speciesPseudoflavonifractor_capillosus-0.0982.39e-056.88e-05
speciesAlistipes_indistinctus-0.0972.6e-057.44e-05
familyClostridiales_noname-0.0962.95e-058.39e-05
genusActinobacillus0.0953.67e-050.000103
speciesActinobacillus_unclassified0.0953.67e-050.000103
speciesPropionibacterium_freudenreichii0.0954.18e-050.000117
speciesEubacterium_rectale0.0944.6e-050.000128
speciesClostridiales_bacterium_1_7_47FAA-0.0944.84e-050.000134
classErysipelotrichia0.0935.31e-050.000144
orderErysipelotrichales0.0935.31e-050.000144
familyErysipelotrichaceae0.0935.31e-050.000144
speciesRuminococcus_gnavus0.0935.93e-050.00016
speciesBacteroides_coprocola0.0936.13e-050.000164
speciesClostridium_citroniae-0.0926.55e-050.000175
genusClostridiales_noname-0.0917.47e-050.000198
classDeltaproteobacteria-0.099.23e-050.000241
orderDesulfovibrionales-0.099.23e-050.000241
familyDesulfovibrionaceae-0.099.23e-050.000241
speciesEggerthella_unclassified0.0890.0001220.000316
speciesAlistipes_putredinis-0.0890.0001260.000325
speciesAnaerotruncus_unclassified-0.0890.0001270.000326
genusEggerthella0.0880.0001410.00036
speciesDesulfovibrio_piger-0.0870.0001570.000398
speciesLactobacillus_gasseri0.0870.0001650.000416
speciesParabacteroides_merdae-0.0870.0001740.000437
genusOlsenella0.0870.0001750.000437
familyVeillonellaceae0.0860.0001970.000489
genusAggregatibacter0.0860.0002030.000502
speciesAlistipes_senegalensis-0.0860.0002060.000506
familyPropionibacteriaceae0.0840.0002940.000719
genusEscherichia0.0830.0003070.000747
speciesVeillonella_dispar0.0810.0004250.00103
speciesBacteroides_vulgatus-0.0810.0004540.00109
speciesStreptococcus_mutans0.0810.0004610.0011
speciesEggerthella_lenta0.080.0005180.00123
speciesHaemophilus_paraphrohaemolyticus0.080.0005520.00131
speciesBifidobacterium_adolescentis0.0790.0006680.00158
speciesClostridium_bolteae-0.0780.0007050.00166
speciesEscherichia_coli0.0770.0008070.00189
speciesLactococcus_garvieae0.0770.0008480.00197
speciesLactobacillus_rhamnosus0.0770.0008530.00197
speciesOlsenella_unclassified0.0770.0008610.00198
speciesLachnospiraceae_bacterium_2_1_46FAA0.0760.0009750.00223
speciesBacteroides_ovatus-0.0750.001140.0026
genusMegasphaera0.0720.001840.00418
speciesOscillibacter_sp_KLE_1745-0.0720.001890.00427
genusButyricimonas-0.0720.001950.00436
speciesButyricimonas_synergistica-0.0720.001950.00436
speciesDorea_unclassified-0.0720.001960.00436
genusOxalobacter-0.070.002510.00554
speciesOxalobacter_formigenes-0.070.002510.00554
speciesParabacteroides_distasonis-0.0690.002840.00623
speciesDialister_succinatiphilus0.0690.002980.00651
genusPhascolarctobacterium-0.0680.003260.00706
speciesPhascolarctobacterium_succinatutens-0.0680.003260.00706
familyFusobacteriaceae0.0670.003720.00802
speciesCollinsella_unclassified-0.0670.003880.00829
speciesMegasphaera_unclassified0.0670.003880.00829
genusSutterella-0.0670.003970.00844
familyOxalobacteraceae-0.0660.004270.00904
speciesClostridium_sp_L2_500.0660.004380.00923
speciesAlistipes_sp_HGB5-0.0660.004430.00929
speciesLactobacillus_crispatus0.0660.004520.00944
speciesSutterella_wadsworthensis-0.0650.004710.00979
speciesKlebsiella_unclassified0.0640.005310.011
phylumFusobacteria0.0640.005970.0122
classFusobacteriia0.0640.005970.0122
orderFusobacteriales0.0640.005970.0122
genusClostridiaceae_noname-0.0630.006320.0128
speciesClostridiaceae_bacterium_JC118-0.0630.006320.0128
speciesLactobacillus_acidophilus0.0630.00640.0129
genusFusobacterium0.0620.007230.0145
speciesBacteroides_dorei-0.0620.007460.0149
speciesClostridium_nexile0.0620.007610.0152
speciesClostridium_hathewayi-0.0610.00790.0157
speciesLeuconostoc_lactis0.0610.007980.0158
speciesLactobacillus_plantarum0.0610.008560.0168
speciesBifidobacterium_catenulatum0.060.009020.0177
familyAcidaminococcaceae-0.060.009360.0183
speciesBacteroides_caccae-0.060.009750.0189
genusMethanosphaera0.0590.01010.0195
speciesMethanosphaera_stadtmanae0.0590.01010.0195
genusDialister0.0590.0110.0211
genusPyramidobacter0.0580.01230.0234
speciesPyramidobacter_piscolens0.0580.01230.0234
speciesOscillibacter_sp_KLE_1728-0.0580.01290.0245
genusSutterellaceae_unclassified-0.0570.01330.0251
genusPorphyromonas0.0570.01360.0256
speciesHoldemania_unclassified0.0570.01390.026
speciesParaprevotella_xylaniphila-0.0570.01410.0263
speciesEnterobacter_aerogenes0.0570.01450.0269
speciesDesulfovibrio_desulfuricans-0.0550.01680.0311
speciesLactococcus_phage_bIL670.0550.01690.0312
speciesBacteroides_plebeius0.0540.01950.0358
genusErysipelotrichaceae_noname0.0540.02010.0368
speciesClostridium_symbiosum-0.0540.02030.037
speciesClostridium_sp_ATCC_BAA_442-0.0530.0210.0381
speciesBacteroides_nordii-0.0530.02170.0392
speciesAcidaminococcus_unclassified-0.0530.02210.0398
genusAcidaminococcaceae_unclassified-0.0520.02380.0427
speciesBacteroides_eggerthii0.0520.02490.0445
speciesMegasphaera_micronuciformis0.0510.02720.0484
speciesBacteroides_massiliensis0.0510.02740.0486
genusMegamonas0.0510.02760.0488
speciesMegamonas_unclassified0.0510.02820.0497
speciesOdoribacter_unclassified0.050.02960.0515
familyBacteroidales_noname-0.050.02970.0515
genusBacteroidales_noname-0.050.02970.0515
speciesBacteroidales_bacterium_ph8-0.050.02970.0515
speciesRuminococcus_lactaris0.050.03030.0524
speciesParabacteroides_sp_20_30.050.03090.0532
speciesAggregatibacter_segnis0.050.03150.0541
speciesEubacterium_siraeum-0.050.03170.0542
speciesBacteroides_sp_1_1_6-0.0490.03270.0557
speciesEscherichia_unclassified0.0480.03650.062
genusProteus0.0480.03810.0645
genusBilophila-0.0470.04050.0683
speciesButyrivibrio_unclassified-0.0470.04170.07
speciesMegasphaera_elsdenii0.0470.04240.071
genusStaphylococcus0.0470.04320.0721
genusSubdoligranulum-0.0470.04380.0728
speciesBilophila_unclassified-0.0460.04590.076
familyStaphylococcaceae0.0450.04990.0824
genusParaprevotella-0.0440.05450.0896
speciesParaprevotella_unclassified-0.0440.0550.0901
speciesAnaerotruncus_colihominis-0.0440.05630.092
speciesClostridium_spiroforme0.0440.05730.0933
phylumSynergistetes0.0440.05870.0942
classSynergistia0.0440.05870.0942
orderSynergistales0.0440.05870.0942
familySynergistaceae0.0440.05870.0942
speciesBacteroides_oleiciplenus-0.0430.06060.097
speciesBilophila_wadsworthia-0.0430.06270.1
speciesSubdoligranulum_unclassified-0.0430.06320.1
speciesFusobacterium_nucleatum0.0430.06430.102
speciesFusobacterium_varium0.0430.06510.103
genusSuccinatimonas-0.0420.06690.105
speciesSuccinatimonas_hippei-0.0420.06690.105
speciesAnaerostipes_unclassified-0.0410.07480.117
speciesBacteroides_faecis0.0410.07620.119
speciesDialister_invisus0.0410.07750.12
speciesMegamonas_rupellensis0.040.08010.124
genusPeptoniphilus0.040.08160.126
speciesErysipelotrichaceae_bacterium_2_2_44A0.040.08210.126
phylumEuryarchaeota0.040.08230.126
speciesAlistipes_sp_AP11-0.0390.08780.134
genusLambdalikevirus0.0390.09250.141
familySuccinivibrionaceae-0.0380.09610.146
speciesPorphyromonas_uenonis0.0380.09640.146
genusCoprobacillus0.0380.09740.147
genusSlackia0.0380.09950.15
speciesPorphyromonas_asaccharolytica0.0380.09990.15
speciesParabacteroides_sp_D13-0.0380.1010.151
phylumViruses_noname0.0380.1040.154
classViruses_noname0.0380.1040.154
speciesAcidaminococcus_intestini0.0370.1060.156
speciesBacteroides_coprophilus0.0370.1060.156
classMethanobacteria0.0370.1090.159
orderMethanobacteriales0.0370.1090.159
familyMethanobacteriaceae0.0370.1090.159
genusBurkholderiales_noname0.0370.1140.165
speciesBurkholderiales_bacterium_1_1_470.0370.1140.165
phylumVerrucomicrobia-0.0360.1160.165
classVerrucomicrobiae-0.0360.1160.165
orderVerrucomicrobiales-0.0360.1160.165
familyVerrucomicrobiaceae-0.0360.1160.165
genusAkkermansia-0.0360.1160.165
speciesAkkermansia_muciniphila-0.0360.1160.165
orderPseudomonadales0.0360.1170.166
speciesMethanobrevibacter_smithii0.0360.120.17
genusFlavonifractor-0.0360.1240.174
speciesFlavonifractor_plautii-0.0360.1240.174
speciesSubdoligranulum_sp_4_3_54A2FAA0.0360.1240.174
genusButyricicoccus-0.0360.1250.174
speciesEubacterium_limosum0.0350.1250.174
speciesButyricicoccus_pullicaecorum-0.0360.1250.174
speciesStreptococcus_infantarius0.0350.1270.176
speciesLactobacillus_fermentum0.0350.130.18
speciesMegamonas_hypermegale0.0350.1310.181
speciesLachnospiraceae_bacterium_6_1_63FAA0.0350.1340.184
familyBurkholderiales_noname0.0340.1360.187
genusButyrivibrio-0.0340.1370.187
speciesFusobacterium_mortiferum0.0340.1380.188
speciesBacteroides_fluxus0.0340.1390.189
speciesMitsuokella_multacida0.0340.1420.193
speciesHoldemania_filiformis-0.0340.1450.196
speciesBacteroides_stercoris0.0340.1450.196
speciesBlautia_hydrogenotrophica0.0340.1470.198
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0330.150.201
genusMethanobrevibacter0.0330.1530.204
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0330.1530.204
speciesProteus_mirabilis0.0330.1550.206
speciesCoprobacillus_unclassified0.0320.1650.219
orderCaudovirales0.0320.170.224
speciesLachnospiraceae_bacterium_1_4_56FAA0.0320.170.224
speciesLactobacillus_reuteri-0.0310.1750.23
speciesAcidaminococcus_fermentans0.0310.1770.232
speciesParaprevotella_clara-0.0310.1780.233
speciesErysipelotrichaceae_bacterium_6_1_450.0310.1850.241
speciesLactococcus_phage_936_sensu_lato-0.030.1890.246
speciesRoseburia_unclassified-0.030.1970.254
speciesEubacterium_biforme0.030.1970.254
speciesBacteroides_xylanisolvens-0.030.1970.254
speciesBacteroides_salanitronis-0.030.1980.255
genusCoprobacter-0.030.20.256
speciesCoprobacter_fastidiosus-0.030.20.256
familyCampylobacteraceae0.0290.210.267
speciesCampylobacter_concisus0.0290.210.267
speciesOdoribacter_laneus-0.0270.2370.301
speciesLactobacillus_ruminis-0.0270.250.316
genusCampylobacter0.0270.2520.318
speciesKlebsiella_sp_MS_92_30.0260.2660.335
speciesBifidobacterium_breve0.0250.2710.34
orderAeromonadales-0.0250.2760.346
classEpsilonproteobacteria0.0250.2780.346
orderCampylobacterales0.0250.2780.346
familyPrevotellaceae-0.0250.2860.355
speciesPrevotella_buccae0.0250.2870.356
speciesCoprobacillus_sp_29_10.0240.3050.377
familyViruses_noname0.0230.3150.387
genusViruses_noname0.0230.3150.387
speciesBacteroides_finegoldii0.0230.320.392
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0230.3210.393
speciesBacteroides_sp_3_1_190.0230.330.401
speciesPrevotella_stercorea0.0230.330.401
familySiphoviridae0.0220.3310.402
speciesPeptostreptococcus_anaerobius0.0220.340.411
speciesEggerthella_sp_1_3_56FAA0.0210.3540.427
speciesHoldemania_sp_AP2-0.0210.3570.429
genusBarnesiella-0.0210.3580.429
speciesBarnesiella_intestinihominis-0.0210.3580.429
speciesEnterobacteria_phage_HK5440.0210.3680.44
orderViruses_noname0.020.3870.461
genusPantoea-0.020.390.463
speciesPantoea_unclassified-0.020.390.463
genusC2likevirus0.020.3940.466
familyMyoviridae0.020.3960.467
speciesPrevotella_bivia-0.0190.4040.474
speciesLactobacillus_amylovorus0.0190.4040.474
speciesClostridium_ramosum0.0190.4110.481
genusHoldemania-0.0190.4160.486
speciesCoprococcus_sp_ART55_10.0180.4250.495
speciesRuminococcus_champanellensis0.0180.4330.503
speciesKlebsiella_phage_KP360.0180.4350.504
speciesBacteroides_clarus0.0180.4370.504
classNegativicutes0.0180.4380.504
orderSelenomonadales0.0180.4380.504
speciesCoprobacillus_sp_D60.0180.4450.511
speciesC2likevirus_unclassified0.0170.4540.52
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0170.470.537
speciesMegamonas_funiformis0.0160.4860.554
speciesSlackia_piriformis0.0160.4920.559
speciesCoriobacteriaceae_bacterium_phI0.0160.4930.559
speciesButyrivibrio_crossotus0.0160.4980.564
speciesStreptococcus_lutetiensis0.0160.5020.567
speciesEubacterium_sp_3_1_31-0.0160.5030.567
speciesEubacterium_dolichum0.0150.5180.582
speciesBacteroides_barnesiae-0.0140.5380.603
speciesCollinsella_intestinalis-0.0140.550.615
speciesRoseburia_hominis-0.0130.5650.63
speciesBlautia_producta-0.0130.5690.633
speciesBacteroides_pectinophilus-0.0130.570.633
speciesMethanobrevibacter_unclassified0.0130.5850.648
speciesBifidobacterium_angulatum-0.0120.6030.667
genusCatenibacterium-0.0120.6070.668
speciesCatenibacterium_mitsuokai-0.0120.6070.668
genusCoriobacteriaceae_noname0.0120.6160.676
speciesBacteroides_fragilis0.0120.6180.677
genusTunalikevirus0.0110.6280.686
speciesErysipelotrichaceae_bacterium_21_30.0110.6360.693
speciesParabacteroides_johnsonii0.0110.6430.699
speciesClostridium_leptum-0.0110.6450.7
speciesLactococcus_phage_P680-0.010.6620.717
speciesLactococcus_phage_jm2-0.010.680.734
speciesCoprococcus_eutactus0.0090.6840.737
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0080.7180.772
genusSiphoviridae_noname0.0080.7350.788
speciesEubacterium_cylindroides0.0080.7460.798
speciesLactobacillus_oris0.0070.7550.803
speciesSutterella_parvirubra-0.0070.7550.803
speciesMitsuokella_unclassified-0.0070.7550.803
speciesPrevotella_copri0.0070.7740.821
speciesFusobacterium_ulcerans0.0070.7780.823
genusParasutterella0.0060.7820.823
speciesParasutterella_excrementihominis0.0060.7820.823
speciesCollinsella_tanakaei0.0060.7830.823
familyPodoviridae0.0060.7850.823
speciesErysipelotrichaceae_bacterium_3_1_53-0.0060.7870.824
phylumProteobacteria0.0060.7920.827
speciesLactococcus_phage_phi7-0.0060.7990.833
speciesAlistipes_unclassified0.0060.8010.833
genusClostridium0.0060.8040.834
speciesStreptococcus_phage_Sfi210.0050.8130.842
genusMitsuokella-0.0050.8290.855
speciesLactobacillus_vaginalis-0.0050.830.855
genusMyoviridae_noname-0.0040.8710.896
genusPrevotella-0.0030.8820.905
speciesBacteroides_salyersiae-0.0030.8970.918
familyClostridiaceae0.0030.90.919
speciesParabacteroides_goldsteinii-0.0030.9040.921
genusMorganella-0.0030.9090.921
speciesMorganella_morganii-0.0030.9090.921
speciesClostridium_sp_KLE_1755-0.0030.9090.921
speciesLachnospiraceae_bacterium_8_1_57FAA0.0020.9140.924
speciesBacteroides_sp_2_1_22-0.0020.9240.932
genusAcidaminococcus-0.0020.9310.937
speciesStreptococcus_pasteurianus-0.0010.950.954
speciesBacteroides_sp_4_3_47FAA-0.0010.9630.965
speciesBacteroides_intestinalis0.00.9880.988
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0008294443395650.001940865229930.000143088375578442.78925
Crohns diseaseSpain17660.001063276157740.0008311469900660.00015587244845423087.67415
Type II diabetesDenmark752770.0001202553412560.0001370946035670.00080311217365724017.87032
Liver cirrhosisChina1201140.0005027444500850.001956972882020.00617825707677994133.3938
Type II diabetesSweden53920.0009416024218270.001345893273390.0816560623417309210.4707
Colorectal cancerAustria64350.002025079714230.002235290624470.0867769643163443515.0054
ObesityDenmark1691230.0001314154225990.0002205071868390.4107245206111734257.0254
Rheumatoid arthritisChina127980.001138150030720.0008171002415390.4381070043011587852.9496
Ulcerative colitisSpain78660.0007416958718980.0008311469900660.5024556550111917263.2447
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382