MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-02 02:36:27 PST
Job id & description: 1672, ARO
Query type: protein
Count queries & homologs: 1, 46
Min % identity & max e-value: 60%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ARO1682977CompleteK11358COG0436unknownunknown100.099.7571.07
ARO1683702CompleteK11358COG0436unknownunknown99.7599.4966.41
ARO1691633CompleteK11358COG0436unknownunknown100.0100.064.72
ARO1674893CompleteK11358COG0436unknownunknown100.099.4965.23
ARO1310071CompleteK11358COG0436unknownunknown99.7589.5265.65
ARO1698876CompleteK11358COG0436Firmicutesunknown100.0100.065.74
ARO1678608Lack 5'-endK11358COG0436unknownunknown99.7599.2464.38
ARO1747295Lack 5'-endK11358COG0436unknownunknown98.2299.4964.6
ARO1700752CompleteK11358COG0436Firmicutesunknown100.0100.064.97
ARO1697240CompleteK11358COG0436unknownunknown100.0100.064.97
ARO1628795CompleteK11358COG0436Firmicutesunknown100.098.2564.72
ARO1700909CompleteK11358COG0436Firmicutesunknown100.0100.064.72
ARO1581080CompleteK11358COG0436FirmicutesEubacterium100.097.0462.94
ARO1688660CompleteK11358COG0436unknownunknown100.099.7562.69
ARO1696545CompleteK11358COG0436unknownunknown99.75100.062.69
ARO1650524CompleteK11358COG0436unknownunknown100.099.060.51
ARO1688553CompleteK11358COG0436unknownunknown99.7599.4961.07
ARO1664906CompleteK11358COG0436unknownunknown100.099.560.51
ARO1669059CompleteK11358COG0436unknownunknown100.099.561.01
ARO1627314Lack 5'-endK11358COG0436unknownunknown100.098.560.25
ARO1676900CompleteK11358COG0436unknownunknown100.099.7561.77
ARO1684711CompleteK11358COG0436unknownunknown99.7599.4960.81
ARO1675386CompleteK11358COG0436unknownunknown100.099.7560.0
ARO1674600CompleteK11358COG0436unknownunknown99.7599.2460.31
ARO1612803CompleteK11358COG0436unknownunknown99.7597.7760.66
ARO1489551Lack both endsK11358COG0436unknownunknown98.7393.362.31
ARO1642277CompleteK11358COG0436unknownunknown100.099.060.25
ARO1692380CompleteK11358COG0436unknownunknown99.7599.4961.07
ARO1641950CompleteK11358COG0436unknownunknown100.098.7560.51
ARO1560788CompleteK11358COG0436unknownunknown99.7596.5862.53
ARO1994904Lack 5'-endK11358COG0436unknownunknown91.6299.1864.54
ARO1505650CompleteK11358COG0436unknownunknown100.095.6661.31
ARO1467573CompleteK11358COG0436FirmicutesEubacterium99.7594.0561.01
ARO1674642CompleteK11358COG0436unknownunknown99.4998.9960.46
ARO1488044CompleteK11358COG0436Firmicutesunknown99.7594.7260.76
ARO1684057CompleteK11358COG0436unknownunknown99.7599.4960.05
ARO1672512CompleteK11358COG0436unknownunknown99.7598.9960.05
ARO2519239Lack 3'-endK11358COG0436unknownunknown81.73100.070.81
ARO1976478Lack 3'-endK11358COG0436unknownunknown92.6499.4663.29
ARO2069860Lack 5'-endK11358COG0436unknownunknown89.5999.4464.23
ARO1733936CompleteK11358COG0436unknownunknown98.4899.2360.82
ARO1637408CompleteK11358COG0436unknownunknown99.7598.7561.27
ARO1956360Lack 5'-endK11358COG0436unknownunknown91.8899.1860.27
ARO2717290Lack 5'-endK11358COG0436unknownunknown77.6699.6760.13
ARO2781537Lack 5'-endK11358COG0436unknownunknown76.1499.3461.13
ARO3095830Lack both endsK11358COG0436unknownunknown71.83100.060.21
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEubacterium_rectale0.6811.19e-2545.62e-252
genusEubacterium0.663.67e-2348.2e-232
familyEubacteriaceae0.665.21e-2348.2e-232
classClostridia0.5311.08e-1361.02e-134
orderClostridiales0.5311.08e-1361.02e-134
phylumFirmicutes0.4613.33e-992.62e-97
genusRuminococcus0.3932.96e-702e-68
genusDorea0.3796.81e-654.02e-63
familyRuminococcaceae0.3782.07e-641.09e-62
speciesRuminococcus_sp_5_1_39BFAA0.3671.05e-604.96e-59
speciesEubacterium_hallii0.3662.46e-601.06e-58
familyLachnospiraceae0.3654.19e-601.65e-58
genusRoseburia0.3619.12e-593.31e-57
speciesRuminococcus_obeum0.362.34e-587.89e-57
genusCoprococcus0.3572.14e-576.73e-56
speciesDorea_formicigenerans0.3521.47e-554.34e-54
phylumBacteroidetes-0.3482.22e-545.51e-53
classBacteroidia-0.3482.22e-545.51e-53
orderBacteroidales-0.3482.22e-545.51e-53
speciesDorea_longicatena0.3451.48e-533.49e-52
speciesLachnospiraceae_bacterium_5_1_63FAA0.3422.55e-525.73e-51
speciesCoprococcus_comes0.3352.6e-505.58e-49
genusFaecalibacterium0.3346.63e-501.3e-48
speciesFaecalibacterium_prausnitzii0.3346.63e-501.3e-48
speciesEubacterium_ventriosum0.3321.69e-493.19e-48
speciesCoprococcus_catus0.3322.96e-495.37e-48
speciesEubacterium_ramulus0.3253.85e-476.73e-46
speciesAnaerostipes_hadrus0.3191.88e-453.17e-44
speciesRoseburia_inulinivorans0.2964.55e-397.41e-38
speciesRoseburia_intestinalis0.2932.02e-383.18e-37
speciesRuminococcus_bromii0.2831.1e-351.67e-34
genusAdlercreutzia0.2766.03e-348.62e-33
speciesAdlercreutzia_equolifaciens0.2766.03e-348.62e-33
genusPrevotella-0.2661.38e-311.92e-30
speciesPrevotella_copri-0.254.3e-285.8e-27
orderCoriobacteriales0.246.06e-267.73e-25
familyCoriobacteriaceae0.246.06e-267.73e-25
phylumActinobacteria0.2381.96e-252.37e-24
classActinobacteria0.2381.96e-252.37e-24
speciesBifidobacterium_longum0.2314.54e-245.36e-23
genusAnaerostipes0.2222.69e-223.1e-21
speciesRuminococcus_torques0.2213.44e-223.87e-21
genusLachnospiraceae_noname0.2214.98e-225.47e-21
genusBifidobacterium0.2163.74e-214.01e-20
orderBifidobacteriales0.2147.84e-218.04e-20
familyBifidobacteriaceae0.2147.84e-218.04e-20
genusPeptostreptococcaceae_noname0.2131.51e-201.52e-19
familyPrevotellaceae-0.2088.75e-208.6e-19
speciesRoseburia_hominis0.2021.08e-181.04e-17
speciesSubdoligranulum_unclassified0.1942.62e-172.47e-16
familyPeptostreptococcaceae0.1933.22e-172.93e-16
speciesCollinsella_aerofaciens0.1933.23e-172.93e-16
speciesBifidobacterium_adolescentis0.1934.02e-173.58e-16
speciesRuminococcus_lactaris0.1934.54e-173.97e-16
phylumFusobacteria-0.1917.33e-176.07e-16
classFusobacteriia-0.1917.33e-176.07e-16
orderFusobacteriales-0.1917.33e-176.07e-16
genusFusobacterium-0.1919.48e-177.71e-16
familyFusobacteriaceae-0.191.28e-161.02e-15
genusSubdoligranulum0.1864.78e-163.76e-15
genusParabacteroides-0.1822.25e-151.74e-14
genusGordonibacter0.1813.08e-152.31e-14
speciesGordonibacter_pamelaeae0.1813.08e-152.31e-14
speciesStreptococcus_salivarius0.1795.87e-154.33e-14
speciesLachnospiraceae_bacterium_3_1_46FAA0.1752.37e-141.72e-13
genusCollinsella0.1734.93e-143.53e-13
speciesAnaerostipes_unclassified-0.1719.55e-146.73e-13
speciesPeptostreptococcaceae_noname_unclassified0.1682.61e-131.81e-12
speciesFusobacterium_ulcerans-0.1649.65e-136.6e-12
speciesPrevotella_buccae-0.1631.54e-121.04e-11
speciesDorea_unclassified-0.1622e-121.33e-11
speciesClostridium_bartlettii0.1594.19e-122.75e-11
speciesClostridium_leptum0.1585.87e-123.8e-11
genusBlautia0.1578.56e-125.46e-11
familyPorphyromonadaceae-0.1579.27e-125.83e-11
speciesEubacterium_eligens0.1561.27e-117.89e-11
phylumProteobacteria-0.1561.34e-118.21e-11
speciesPrevotella_stercorea-0.1514.57e-112.77e-10
familyStreptococcaceae0.158.01e-114.79e-10
genusStreptococcus0.1498.98e-115.3e-10
speciesLachnospiraceae_bacterium_1_1_57FAA0.1499.56e-115.57e-10
genusHoldemania0.1481.17e-106.73e-10
speciesClostridium_ramosum-0.1426.5e-103.7e-09
speciesClostridiales_bacterium_1_7_47FAA-0.1426.64e-103.73e-09
speciesRuminococcus_callidus0.1382.01e-091.12e-08
speciesFusobacterium_nucleatum-0.1363.49e-091.92e-08
speciesBacteroides_thetaiotaomicron-0.1363.82e-092.07e-08
speciesEubacterium_siraeum0.1354.28e-092.3e-08
genusCoprobacillus-0.1345.92e-093.14e-08
speciesCoprococcus_sp_ART55_10.1337.42e-093.89e-08
familyBacteroidaceae-0.1321.05e-085.39e-08
genusBacteroides-0.1321.05e-085.39e-08
genusTuricibacter0.1311.43e-087.26e-08
speciesButyrivibrio_unclassified0.131.52e-087.63e-08
speciesEscherichia_coli-0.131.85e-089.19e-08
speciesStreptococcus_thermophilus0.1291.95e-089.59e-08
speciesFusobacterium_mortiferum-0.1291.98e-089.63e-08
speciesLactobacillus_salivarius-0.1283.13e-081.49e-07
genusPantoea-0.1273.16e-081.49e-07
speciesPantoea_unclassified-0.1273.16e-081.49e-07
speciesStreptococcus_australis0.1273.65e-081.71e-07
speciesClostridium_nexile-0.1264.55e-082.09e-07
genusClostridiales_noname-0.1264.56e-082.09e-07
speciesTuricibacter_unclassified0.1264.7e-082.13e-07
speciesCoprobacillus_unclassified-0.1255.62e-082.53e-07
genusEscherichia-0.1256.09e-082.71e-07
orderLactobacillales0.1256.21e-082.74e-07
classBacilli0.1256.61e-082.89e-07
speciesClostridium_symbiosum-0.1246.73e-082.91e-07
familyClostridiaceae-0.1247.64e-083.28e-07
genusPseudoflavonifractor0.1221.18e-074.97e-07
speciesPseudoflavonifractor_capillosus0.1221.18e-074.97e-07
speciesFusobacterium_varium-0.1221.2e-075.01e-07
speciesParabacteroides_goldsteinii-0.1211.56e-076.46e-07
speciesStreptococcus_parasanguinis0.121.84e-077.55e-07
genusMegasphaera-0.121.94e-077.89e-07
speciesDialister_invisus0.1192.48e-071e-06
speciesHoldemania_filiformis0.1192.56e-071.02e-06
genusDialister0.1192.64e-071.05e-06
orderEnterobacteriales-0.1182.87e-071.12e-06
familyEnterobacteriaceae-0.1182.87e-071.12e-06
familyBacteroidales_noname0.1183.36e-071.28e-06
genusBacteroidales_noname0.1183.36e-071.28e-06
speciesBacteroidales_bacterium_ph80.1183.36e-071.28e-06
genusClostridium-0.1183.4e-071.28e-06
speciesClostridium_bolteae-0.1173.71e-071.39e-06
classGammaproteobacteria-0.1164.85e-071.8e-06
speciesMegasphaera_micronuciformis-0.1156.57e-072.42e-06
speciesTuricibacter_sanguinis0.1156.73e-072.46e-06
speciesClostridium_hathewayi-0.1111.47e-065.34e-06
speciesKlebsiella_pneumoniae-0.1082.94e-061.05e-05
speciesRuminococcus_gnavus-0.1082.94e-061.05e-05
genusMegamonas-0.1064.14e-061.47e-05
speciesBlautia_hydrogenotrophica0.1064.48e-061.58e-05
speciesMegamonas_unclassified-0.1064.6e-061.61e-05
speciesClostridium_clostridioforme-0.1055.29e-061.84e-05
genusButyrivibrio0.1029.34e-063.22e-05
speciesLactobacillus_sanfranciscensis0.1029.68e-063.31e-05
speciesBacteroides_stercoris-0.1011.23e-054.18e-05
speciesBifidobacterium_bifidum0.0991.65e-055.56e-05
speciesParabacteroides_unclassified-0.0945e-050.000167
speciesBifidobacterium_catenulatum0.0945.08e-050.000169
speciesClostridium_sp_ATCC_BAA_442-0.0935.62e-050.000185
speciesCoprococcus_eutactus0.0926.27e-050.000206
speciesDesulfovibrio_piger-0.0926.7e-050.000218
genusLeuconostoc0.0926.95e-050.000225
speciesHoldemania_unclassified0.0927.31e-050.000235
speciesEubacterium_limosum-0.0917.78e-050.000246
classEpsilonproteobacteria-0.0917.81e-050.000246
orderCampylobacterales-0.0917.81e-050.000246
speciesBacteroides_plebeius-0.0890.0001070.000334
genusCoprobacter0.0890.000120.00037
speciesCoprobacter_fastidiosus0.0890.000120.00037
genusKlebsiella-0.0880.0001350.000414
speciesLactobacillus_mucosae-0.0880.0001480.000451
speciesLachnospiraceae_bacterium_8_1_57FAA0.0850.0002250.000681
speciesLactobacillus_fermentum-0.0850.0002270.000682
genusButyricimonas-0.0850.0002310.000686
speciesButyricimonas_synergistica-0.0850.0002310.000686
genusLactococcus0.0850.0002460.000726
speciesLactococcus_lactis0.0820.0003590.00105
familyLeuconostocaceae0.0820.0003750.00109
speciesMegamonas_hypermegale-0.0810.0004220.00122
speciesBacteroides_finegoldii-0.080.0005260.00151
speciesCampylobacter_concisus-0.080.0005340.00153
familyCampylobacteraceae-0.080.0005440.00155
genusCampylobacter-0.0790.0006210.00176
speciesBacteroides_faecis-0.0790.0006340.00178
genusBarnesiella0.0790.0006680.00185
speciesBarnesiella_intestinihominis0.0790.0006680.00185
speciesAnaerotruncus_unclassified0.0760.001020.00282
speciesBacteroides_uniformis0.0760.001070.00294
genusEggerthella0.0760.001080.00295
genusMitsuokella0.0750.001090.00296
speciesParabacteroides_merdae-0.0750.001110.00299
speciesStreptococcus_sanguinis0.0740.001290.00346
speciesMegamonas_rupellensis-0.0740.001320.00352
genusCatenibacterium-0.0730.001510.00398
speciesCatenibacterium_mitsuokai-0.0730.001510.00398
speciesBacteroides_xylanisolvens-0.0730.001540.00404
speciesBacteroides_fragilis-0.0730.001560.00405
genusRuminococcaceae_noname0.0730.001570.00405
speciesRuminococcaceae_bacterium_D160.0730.001570.00405
speciesEggerthella_lenta0.0730.00170.00436
speciesEggerthella_unclassified0.0720.001720.00439
speciesMitsuokella_unclassified0.0710.0020.00508
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0710.002030.00512
genusBurkholderiales_noname0.070.002390.00597
speciesBurkholderiales_bacterium_1_1_470.070.002390.00597
familyBurkholderiales_noname0.070.002530.00629
speciesLactobacillus_acidophilus0.0680.003050.00754
speciesMegasphaera_unclassified-0.0680.003350.00824
speciesPeptostreptococcus_stomatis-0.0660.004070.00995
phylumVerrucomicrobia0.0660.004370.0104
classVerrucomicrobiae0.0660.004370.0104
orderVerrucomicrobiales0.0660.004370.0104
familyVerrucomicrobiaceae0.0660.004370.0104
genusAkkermansia0.0660.004370.0104
speciesAkkermansia_muciniphila0.0660.004370.0104
speciesBacteroides_salyersiae-0.0660.004410.0104
speciesBacteroides_coprophilus-0.0650.004620.0108
genusSutterellaceae_unclassified-0.0650.004770.0111
speciesStreptococcus_anginosus-0.0650.005110.0119
speciesLachnospiraceae_bacterium_1_4_56FAA0.0650.005140.0119
speciesLactobacillus_crispatus-0.0630.00610.014
speciesAcidaminococcus_fermentans-0.0630.006130.014
familyClostridiales_noname-0.0630.006820.0156
familyBacillales_noname0.0610.008560.0193
genusGemella0.0610.008560.0193
speciesLeuconostoc_lactis0.0610.00860.0193
genusSolobacterium0.0610.008730.0194
speciesSolobacterium_moorei0.0610.008730.0194
speciesLachnospiraceae_bacterium_2_1_46FAA-0.060.009320.0207
speciesBifidobacterium_pseudocatenulatum0.0590.01010.0223
familyAcidaminococcaceae-0.0590.01050.0229
genusAcidaminococcus-0.0590.01050.0229
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0590.01060.0231
genusParasutterella0.0590.01090.0235
speciesParasutterella_excrementihominis0.0590.01090.0235
speciesSutterella_parvirubra-0.0580.01180.0252
speciesMegamonas_funiformis-0.0580.01180.0252
genusPhascolarctobacterium-0.0570.0130.0275
speciesPhascolarctobacterium_succinatutens-0.0570.0130.0275
phylumViruses_noname0.0570.01330.0279
classViruses_noname0.0570.01330.0279
orderBacillales0.0570.01430.0299
speciesLactobacillus_oris-0.0560.01470.0306
speciesWeissella_cibaria0.0560.01510.0313
speciesProteus_mirabilis-0.0560.0160.033
speciesAlistipes_onderdonkii0.0560.01610.033
speciesOdoribacter_unclassified0.0550.01660.0339
speciesLachnospiraceae_bacterium_7_1_58FAA0.0550.01670.034
genusMorganella-0.0550.01720.0347
speciesMorganella_morganii-0.0550.01720.0347
speciesBlautia_producta-0.0550.01780.0356
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0550.01780.0356
speciesBacteroides_nordii-0.0550.01820.0362
orderCaudovirales0.0540.01980.0393
speciesBacteroides_caccae-0.0540.01990.0393
speciesEubacterium_cylindroides0.0540.02040.04
speciesStreptococcus_vestibularis0.0540.02040.04
classBetaproteobacteria-0.0540.02050.04
genusDesulfovibrio-0.0530.02140.0416
genusAggregatibacter-0.0530.02150.0416
speciesErysipelotrichaceae_bacterium_21_30.0530.02160.0416
speciesAcidaminococcus_unclassified-0.0530.02230.0428
speciesAggregatibacter_segnis-0.0520.02520.0482
familyMyoviridae0.0510.02660.0506
speciesLactobacillus_plantarum0.0510.02810.0533
genusFlavonifractor-0.0510.02850.0536
speciesFlavonifractor_plautii-0.0510.02850.0536
speciesHaemophilus_paraphrohaemolyticus-0.050.03140.0588
speciesBacteroides_ovatus-0.050.03210.0599
orderActinomycetales0.050.03230.06
speciesLactococcus_phage_P6800.0490.03260.0603
speciesBifidobacterium_animalis0.0490.03320.0612
orderBurkholderiales-0.0490.03380.0621
speciesAlistipes_sp_AP110.0490.03420.0626
speciesLactobacillus_vaginalis-0.0480.03690.0672
speciesWeissella_confusa0.0480.03710.0674
speciesClostridium_sp_KLE_1755-0.0480.03990.0722
genusWeissella0.0470.04150.0748
speciesMethanobrevibacter_smithii0.0470.04180.075
genusProteus-0.0470.04250.0759
speciesBacteroides_eggerthii-0.0470.04260.0759
speciesPropionibacterium_freudenreichii0.0460.04450.079
speciesLactococcus_garvieae0.0460.0450.0796
familySutterellaceae-0.0460.04660.0821
speciesStreptococcus_infantarius-0.0460.04780.0839
speciesClostridium_citroniae-0.0460.04840.0846
orderAeromonadales-0.0450.05080.0885
speciesStreptococcus_pasteurianus-0.0450.05260.0913
speciesLactobacillus_gasseri-0.0440.0560.0968
speciesRoseburia_unclassified-0.0440.05750.0991
orderViruses_noname0.0440.05780.0992
genusMethanobrevibacter0.0440.05950.102
speciesClostridium_sp_L2_500.0430.06330.108
genusErysipelotrichaceae_noname-0.0430.06340.108
genusClostridiaceae_noname-0.0430.06610.111
speciesClostridiaceae_bacterium_JC118-0.0430.06610.111
speciesCollinsella_tanakaei-0.0420.0670.112
speciesCoprobacillus_sp_29_1-0.0420.0670.112
speciesParaprevotella_unclassified-0.0420.0680.113
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0420.06950.116
speciesParabacteroides_distasonis-0.0420.07060.117
genusPeptostreptococcus-0.0420.07110.117
genusSiphoviridae_noname0.0420.07190.118
phylumEuryarchaeota0.0420.07260.119
genusParaprevotella-0.040.08660.141
familyStaphylococcaceae0.0390.08850.144
classMethanobacteria0.0390.09440.152
orderMethanobacteriales0.0390.09440.152
familyMethanobacteriaceae0.0390.09440.152
speciesEubacterium_sp_3_1_31-0.0380.09720.156
speciesBifidobacterium_breve-0.0380.09770.156
familyPodoviridae0.0380.09790.156
genusActinomyces0.0380.1040.165
speciesBifidobacterium_dentium-0.0380.1040.165
speciesKlebsiella_oxytoca0.0370.1050.166
familyActinomycetaceae0.0370.1090.171
genusCoriobacteriaceae_noname0.0370.1090.171
speciesEnterococcus_faecalis-0.0370.1110.173
familySuccinivibrionaceae-0.0360.1160.18
speciesBacteroides_sp_1_1_6-0.0360.1160.18
genusPeptoniphilus-0.0360.1170.181
speciesEnterobacteria_phage_HK544-0.0360.1210.187
speciesRuminococcus_sp_JC3040.0350.1290.198
genusStaphylococcus0.0350.1310.201
speciesOdoribacter_splanchnicus-0.0350.1320.202
phylumSynergistetes-0.0340.1360.203
classSynergistia-0.0340.1360.203
orderSynergistales-0.0340.1360.203
familySynergistaceae-0.0340.1360.203
genusSuccinatimonas-0.0340.1360.203
speciesSuccinatimonas_hippei-0.0340.1360.203
speciesEubacterium_dolichum-0.0340.1360.203
genusButyricicoccus-0.0340.1390.206
speciesButyricicoccus_pullicaecorum-0.0340.1390.206
speciesClostridium_asparagiforme-0.0340.1390.206
speciesVeillonella_dispar-0.0340.140.207
speciesParaprevotella_clara-0.0340.1420.208
speciesEscherichia_unclassified-0.0340.1420.208
speciesLactobacillus_amylovorus-0.0330.1480.216
speciesBacteroides_intestinalis-0.0330.1490.217
speciesLactococcus_phage_phi70.0330.1560.226
speciesCoriobacteriaceae_bacterium_phI0.0330.1560.226
speciesCollinsella_unclassified-0.0320.170.245
speciesParaprevotella_xylaniphila-0.0310.1760.253
speciesRothia_mucilaginosa0.0310.1780.255
genusSlackia-0.030.1880.269
genusMyoviridae_noname0.030.1940.277
speciesBacteroides_coprocola-0.030.1970.28
genusOdoribacter-0.0290.2030.288
familySiphoviridae0.0290.2040.288
speciesErysipelotrichaceae_bacterium_6_1_450.0290.2080.292
speciesAlistipes_indistinctus-0.0290.2080.292
speciesLactobacillus_delbrueckii0.0280.2260.317
speciesOscillibacter_sp_KLE_1745-0.0280.2330.325
speciesStreptococcus_mitis_oralis_pneumoniae0.0270.2360.329
classErysipelotrichia-0.0270.2430.335
orderErysipelotrichales-0.0270.2430.335
familyErysipelotrichaceae-0.0270.2430.335
classDeltaproteobacteria-0.0260.2640.361
orderDesulfovibrionales-0.0260.2640.361
familyDesulfovibrionaceae-0.0260.2640.361
speciesKlebsiella_unclassified-0.0260.2660.363
speciesPorphyromonas_asaccharolytica0.0260.2670.363
classNegativicutes-0.0250.2730.369
orderSelenomonadales-0.0250.2730.369
genusSutterella-0.0250.2780.374
speciesBacteroides_sp_3_1_19-0.0250.2780.374
speciesLactococcus_phage_936_sensu_lato0.0250.2880.385
speciesMegasphaera_elsdenii-0.0250.2880.385
genusPyramidobacter-0.0240.290.385
speciesPyramidobacter_piscolens-0.0240.290.385
genusAnaerotruncus0.0240.2910.385
speciesParabacteroides_sp_D13-0.0240.2910.385
speciesPeptostreptococcus_anaerobius-0.0240.2920.385
genusOxalobacter-0.0240.2940.385
speciesOxalobacter_formigenes-0.0240.2940.385
speciesLactococcus_phage_jm20.0240.2950.386
genusEnterococcus-0.0240.3010.392
speciesHaemophilus_sputorum0.0230.3110.404
genusTunalikevirus0.0230.3170.41
speciesBacteroides_fluxus0.0230.3170.41
genusRothia0.0230.320.413
speciesLactobacillus_reuteri-0.0230.3220.414
speciesAlistipes_sp_HGB5-0.0230.3240.416
speciesStreptococcus_gordonii0.0230.3250.416
familyMicrococcaceae0.0230.330.421
speciesKlebsiella_phage_KP360.0220.3350.426
familyOxalobacteraceae-0.0220.3360.426
familyEnterococcaceae-0.0220.3420.433
speciesAlistipes_putredinis0.0220.3450.435
familyViruses_noname-0.0210.3550.446
genusViruses_noname-0.0210.3550.446
speciesDialister_succinatiphilus0.0210.3560.446
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0210.3570.446
speciesBacteroides_oleiciplenus-0.0210.3590.447
speciesParabacteroides_johnsonii-0.0210.360.447
speciesLactobacillus_rhamnosus0.0210.3630.45
speciesBacteroides_pectinophilus0.0210.3740.462
speciesLactococcus_phage_bIL67-0.020.3770.465
speciesBacteroides_dorei0.020.3790.466
speciesAcidaminococcus_intestini-0.020.3930.482
familyVeillonellaceae0.020.3990.486
speciesBacteroides_sp_4_3_47FAA0.0190.40.486
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0190.4020.486
speciesMitsuokella_multacida-0.0190.4020.486
speciesBacteroides_cellulosilyticus0.0190.4020.486
speciesBacteroides_massiliensis-0.0190.4030.486
familyClostridiales_Family_XI_Incertae_Sedis-0.0180.4250.512
speciesVeillonella_unclassified0.0180.4360.524
speciesAlistipes_senegalensis0.0170.450.538
speciesOscillibacter_unclassified0.0170.450.538
speciesCollinsella_intestinalis-0.0170.4560.544
speciesBifidobacterium_angulatum0.0160.4830.574
speciesBacteroides_vulgatus-0.0160.4950.587
speciesAlistipes_finegoldii0.0150.510.603
genusVeillonella0.0150.5190.612
speciesCitrobacter_freundii-0.0140.5360.631
genusPropionibacterium0.0140.5370.631
speciesEnterobacter_aerogenes0.0140.5390.631
familyOscillospiraceae0.0140.5530.643
genusOscillibacter0.0140.5530.643
speciesPorphyromonas_uenonis-0.0140.5530.643
genusPorphyromonas0.0140.5580.647
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0130.5640.652
speciesOlsenella_unclassified0.0130.5670.654
speciesClostridium_spiroforme0.0130.5680.654
speciesStreptococcus_lutetiensis-0.0130.5810.667
speciesSutterella_wadsworthensis-0.0130.5880.674
speciesPrevotella_bivia-0.0120.5910.675
speciesC2likevirus_unclassified0.0120.5930.676
speciesMethanobrevibacter_unclassified0.0120.5970.679
speciesClostridium_perfringens-0.0120.6130.694
genusMethanosphaera-0.0120.6150.694
speciesMethanosphaera_stadtmanae-0.0120.6150.694
familyLactobacillaceae0.0110.6250.704
familyRikenellaceae-0.0110.630.706
genusAlistipes-0.0110.630.706
genusC2likevirus0.0110.6360.711
speciesBilophila_wadsworthia0.010.6650.742
genusParvimonas-0.010.6670.743
speciesParvimonas_unclassified-0.010.6690.743
speciesHaemophilus_parainfluenzae0.010.6720.745
genusLambdalikevirus0.010.6780.749
speciesAnaerotruncus_colihominis-0.0090.6820.752
speciesBacteroides_salanitronis0.0090.6850.754
genusHaemophilus0.0090.6870.754
speciesAlistipes_unclassified-0.0090.690.755
speciesVeillonella_parvula0.0090.6910.755
speciesEggerthella_sp_1_3_56FAA0.0090.6970.76
orderPasteurellales0.0080.7140.775
familyPasteurellaceae0.0080.7140.775
speciesGemella_morbillorum0.0080.7230.783
speciesBacteroides_barnesiae0.0080.740.799
speciesHoldemania_sp_AP20.0080.7410.799
speciesButyrivibrio_crossotus0.0070.7520.809
genusActinobacillus0.0070.7560.809
speciesActinobacillus_unclassified0.0070.7560.809
speciesDesulfovibrio_desulfuricans0.0070.7660.818
speciesEubacterium_biforme0.0070.7680.818
speciesStreptococcus_phage_Sfi21-0.0070.7790.828
speciesLactobacillus_casei_paracasei0.0060.7880.836
speciesOdoribacter_laneus0.0060.7960.842
speciesOscillibacter_sp_KLE_17280.0050.8130.858
genusCitrobacter-0.0050.8180.862
speciesLactobacillus_ruminis-0.0050.8320.875
speciesVeillonella_atypica0.0050.8340.875
genusLactobacillus0.0050.8370.875
speciesBacteroides_clarus-0.0050.8380.875
speciesAlistipes_shahii-0.0040.8690.905
speciesEnterobacter_cloacae0.0040.8750.91
speciesKlebsiella_sp_MS_92_30.0040.880.911
speciesCitrobacter_unclassified-0.0030.880.911
speciesEnterococcus_faecium0.0030.8860.913
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0030.8860.913
orderPseudomonadales0.0030.8970.922
genusAcidaminococcaceae_unclassified0.0030.90.923
genusEnterobacter0.0030.9110.933
speciesErysipelotrichaceae_bacterium_3_1_53-0.0030.9130.933
genusOlsenella-0.0010.9570.975
speciesBilophila_unclassified-0.0010.9580.975
speciesStreptococcus_mutans0.0010.9620.976
speciesRuminococcus_champanellensis-0.0010.970.98
speciesSlackia_piriformis0.0010.9710.98
speciesBacteroides_sp_2_1_22-0.0010.9720.98
genusBilophila0.0010.9760.982
speciesParabacteroides_sp_20_30.00.9870.991
familyPropionibacteriaceae0.00.9910.993
speciesCoprobacillus_sp_D60.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01847438711080.03578450680091.78496398199e-1011703.93026
Type II diabetesChina1831850.02623204542250.03680908750690.0010462242743516565.47275
Crohns diseaseSpain17660.0257931479640.03937696995320.00187924517755504216.7648
Ulcerative colitisSpain78660.03228627145780.03937696995320.0499304090564477115.7386
Colorectal cancerAustria64350.03835885467050.04885141578750.098842552916502717.0084
Type II diabetesDenmark752770.03492797293860.03860380466420.212997862181338143.8621
Rheumatoid arthritisChina127980.05487373776240.051583634310.4716354430671698956.6545
ObesityDenmark1691230.04001909102290.03621516401360.5613360253042081968.4588
Type II diabetesSweden53920.06755022449080.06992086048510.8717570761352619788.7132
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382