MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-02 02:45:31 PST
Job id & description: 1673, ARO
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ARO1682977CompleteK11358COG0436unknownunknown100.099.7571.07
ARO2519239Lack 3'-endK11358COG0436unknownunknown81.73100.070.81
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusSubdoligranulum0.3261.41e-476.66e-45
speciesSubdoligranulum_unclassified0.3247.95e-471.88e-44
speciesAnaerotruncus_unclassified0.2821.19e-351.87e-33
phylumVerrucomicrobia0.2594.58e-302.4e-28
classVerrucomicrobiae0.2594.58e-302.4e-28
orderVerrucomicrobiales0.2594.58e-302.4e-28
familyVerrucomicrobiaceae0.2594.58e-302.4e-28
genusAkkermansia0.2594.58e-302.4e-28
speciesAkkermansia_muciniphila0.2594.58e-302.4e-28
genusPseudoflavonifractor0.2595.62e-302.41e-28
speciesPseudoflavonifractor_capillosus0.2595.62e-302.41e-28
speciesClostridium_leptum0.2554.56e-291.79e-27
genusAnaerotruncus0.2531.1e-283.99e-27
speciesEubacterium_siraeum0.253.79e-281.28e-26
familyRuminococcaceae0.2364.81e-251.51e-23
phylumEuryarchaeota0.2263.84e-231.13e-21
classMethanobacteria0.2241.13e-222.81e-21
orderMethanobacteriales0.2241.13e-222.81e-21
familyMethanobacteriaceae0.2241.13e-222.81e-21
familyBacteroidales_noname0.2231.68e-223.6e-21
genusBacteroidales_noname0.2231.68e-223.6e-21
speciesBacteroidales_bacterium_ph80.2231.68e-223.6e-21
genusMethanobrevibacter0.2232.08e-224.27e-21
speciesErysipelotrichaceae_bacterium_21_30.2222.87e-225.64e-21
speciesLachnospiraceae_bacterium_7_1_58FAA0.2214.77e-229.01e-21
classClostridia0.2198.5e-221.49e-20
orderClostridiales0.2198.5e-221.49e-20
speciesMethanobrevibacter_smithii0.2163.93e-216.62e-20
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2146.95e-211.13e-19
speciesRuminococcus_gnavus-0.2096.74e-201.06e-18
speciesLachnospiraceae_bacterium_3_1_46FAA0.2053.64e-195.54e-18
familyOxalobacteraceae0.22.32e-183.42e-17
genusOxalobacter0.1994.11e-185.71e-17
speciesOxalobacter_formigenes0.1994.11e-185.71e-17
familyRikenellaceae0.1952.08e-172.73e-16
genusAlistipes0.1952.08e-172.73e-16
speciesCoprococcus_catus0.1891.54e-161.96e-15
genusCoprococcus0.1882.08e-162.58e-15
genusBarnesiella0.1849.36e-161.1e-14
speciesBarnesiella_intestinihominis0.1849.36e-161.1e-14
genusButyrivibrio0.1831.4e-151.61e-14
speciesAlistipes_onderdonkii0.1822.38e-152.67e-14
speciesAlistipes_senegalensis0.1812.79e-153.06e-14
speciesRoseburia_hominis0.1796.3e-156.76e-14
speciesSubdoligranulum_sp_4_3_54A2FAA0.1797e-157.34e-14
phylumFirmicutes0.1718.74e-148.97e-13
genusGordonibacter0.1682.75e-132.7e-12
speciesGordonibacter_pamelaeae0.1682.75e-132.7e-12
genusCoprobacter0.1649.4e-138.87e-12
speciesCoprobacter_fastidiosus0.1649.4e-138.87e-12
familyFusobacteriaceae-0.1612.77e-122.56e-11
genusAdlercreutzia0.163.3e-122.94e-11
speciesAdlercreutzia_equolifaciens0.163.3e-122.94e-11
genusRuminococcaceae_noname0.1594.73e-124.06e-11
speciesRuminococcaceae_bacterium_D160.1594.73e-124.06e-11
genusFusobacterium-0.1594.82e-124.06e-11
genusRuminococcus0.1595.13e-124.25e-11
phylumFusobacteria-0.1587.2e-125.66e-11
classFusobacteriia-0.1587.2e-125.66e-11
orderFusobacteriales-0.1587.2e-125.66e-11
speciesErysipelotrichaceae_bacterium_6_1_450.1551.81e-111.4e-10
speciesRuminococcus_lactaris0.1542.32e-111.77e-10
speciesMethanobrevibacter_unclassified0.1532.86e-112.14e-10
genusOdoribacter0.1533.12e-112.3e-10
speciesAlistipes_sp_AP110.1524.51e-113.27e-10
classGammaproteobacteria-0.1515.34e-113.82e-10
familyEubacteriaceae0.157.77e-115.4e-10
genusEubacterium0.157.78e-115.4e-10
speciesCoprobacillus_unclassified-0.158.03e-115.49e-10
speciesCoprococcus_eutactus0.1481.46e-109.84e-10
speciesDorea_longicatena0.1471.77e-101.18e-09
speciesEubacterium_ramulus0.1452.96e-101.94e-09
speciesHoldemania_filiformis0.1443.51e-102.27e-09
speciesEubacterium_hallii0.1443.61e-102.3e-09
speciesRuminococcus_bromii0.1444.09e-102.57e-09
speciesLactococcus_phage_P6800.1434.83e-103e-09
speciesAlistipes_shahii0.1435.48e-103.36e-09
speciesAlistipes_finegoldii0.1427.02e-104.25e-09
familySiphoviridae0.1418.97e-105.36e-09
phylumBacteroidetes-0.1419.93e-105.72e-09
classBacteroidia-0.1419.94e-105.72e-09
orderBacteroidales-0.1419.94e-105.72e-09
speciesButyrivibrio_crossotus0.141.3e-097.39e-09
phylumProteobacteria-0.1391.63e-099.16e-09
genusDorea0.1381.95e-091.08e-08
speciesKlebsiella_pneumoniae-0.1382.07e-091.14e-08
speciesFusobacterium_mortiferum-0.1372.82e-091.53e-08
speciesOdoribacter_splanchnicus0.1363.95e-092.12e-08
genusKlebsiella-0.1329.39e-094.98e-08
speciesAlistipes_putredinis0.1321.03e-085.4e-08
genusMegasphaera-0.1321.09e-085.65e-08
genusC2likevirus0.1321.13e-085.8e-08
speciesDesulfovibrio_desulfuricans0.1311.21e-086.14e-08
speciesC2likevirus_unclassified0.1311.39e-086.98e-08
speciesCoprococcus_comes0.131.6e-087.95e-08
genusVeillonella-0.1291.93e-089.49e-08
orderCoriobacteriales0.1282.54e-081.22e-07
familyCoriobacteriaceae0.1282.54e-081.22e-07
speciesEubacterium_eligens0.1282.68e-081.28e-07
speciesMegasphaera_micronuciformis-0.1282.73e-081.29e-07
speciesCollinsella_aerofaciens0.1273.28e-081.53e-07
genusHoldemania0.1273.56e-081.65e-07
genusSiphoviridae_noname0.1273.74e-081.71e-07
orderEnterobacteriales-0.1273.8e-081.71e-07
familyEnterobacteriaceae-0.1273.8e-081.71e-07
familyOscillospiraceae0.1264.51e-081.99e-07
genusOscillibacter0.1264.51e-081.99e-07
speciesRuminococcus_obeum0.1264.77e-082.08e-07
speciesVeillonella_unclassified-0.1246.76e-082.93e-07
speciesEubacterium_rectale0.1247.77e-083.33e-07
speciesOscillibacter_unclassified0.1239.39e-083.99e-07
speciesMitsuokella_unclassified0.1221.26e-075.31e-07
speciesAlistipes_indistinctus0.1211.64e-076.85e-07
speciesLactococcus_lactis0.122.11e-078.74e-07
speciesStreptococcus_thermophilus0.1192.27e-079.32e-07
speciesBifidobacterium_adolescentis0.1192.4e-079.77e-07
genusCollinsella0.1192.58e-071.04e-06
familyLachnospiraceae0.1183.16e-071.26e-06
genusPorphyromonas0.1173.69e-071.46e-06
speciesVeillonella_atypica-0.1173.99e-071.57e-06
speciesPorphyromonas_asaccharolytica0.1174.17e-071.63e-06
speciesMegamonas_unclassified-0.1164.72e-071.83e-06
genusHaemophilus-0.1155.84e-072.23e-06
genusMegamonas-0.1155.87e-072.23e-06
speciesClostridium_ramosum-0.1156.31e-072.38e-06
genusMitsuokella0.1147.02e-072.63e-06
speciesRoseburia_intestinalis0.1147.48e-072.78e-06
speciesHaemophilus_parainfluenzae-0.1147.61e-072.81e-06
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1147.69e-072.81e-06
speciesRuminococcus_sp_5_1_39BFAA0.1139.1e-073.3e-06
familyPorphyromonadaceae0.1139.71e-073.5e-06
familyBacteroidaceae-0.1121.19e-064.22e-06
genusBacteroides-0.1121.19e-064.22e-06
speciesAnaerostipes_hadrus0.1121.24e-064.37e-06
speciesVeillonella_dispar-0.1111.66e-065.8e-06
speciesFusobacterium_varium-0.111.92e-066.66e-06
genusEscherichia-0.111.95e-066.72e-06
speciesVeillonella_parvula-0.112.01e-066.87e-06
orderPasteurellales-0.1092.21e-067.45e-06
familyPasteurellaceae-0.1092.21e-067.45e-06
speciesPrevotella_copri-0.1082.77e-069.27e-06
orderCaudovirales0.1082.88e-069.57e-06
speciesOlsenella_unclassified0.1083.07e-061.01e-05
speciesEscherichia_coli-0.1064.62e-061.51e-05
phylumViruses_noname0.1055.51e-061.78e-05
classViruses_noname0.1055.51e-061.78e-05
speciesClostridium_nexile-0.1055.73e-061.84e-05
speciesDorea_formicigenerans0.1046.06e-061.93e-05
speciesButyrivibrio_unclassified0.1046.56e-062.08e-05
speciesRuminococcus_torques0.1037.57e-062.37e-05
speciesCoprobacillus_sp_29_10.1037.59e-062.37e-05
speciesCoprococcus_sp_ART55_10.1037.8e-062.42e-05
speciesBacteroides_cellulosilyticus0.1038.9e-062.75e-05
speciesOdoribacter_laneus0.0991.85e-055.67e-05
genusDesulfovibrio0.0991.89e-055.76e-05
genusOlsenella0.0991.96e-055.93e-05
speciesFusobacterium_ulcerans-0.0963.15e-059.47e-05
speciesPrevotella_stercorea-0.0944.31e-050.000129
speciesBacteroides_plebeius-0.0944.57e-050.000136
genusPrevotella-0.0944.7e-050.000139
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0944.91e-050.000144
genusCoprobacillus-0.0935.52e-050.000161
genusLactococcus0.0935.75e-050.000167
speciesMegamonas_rupellensis-0.0936.04e-050.000174
speciesEubacterium_ventriosum0.0926.36e-050.000182
speciesParabacteroides_sp_20_30.0926.96e-050.000198
speciesAnaerotruncus_colihominis0.0927.24e-050.000205
familyVeillonellaceae-0.0918.41e-050.000236
speciesRuminococcus_callidus0.099.44e-050.000264
speciesBacteroides_pectinophilus0.0890.0001130.000314
speciesEubacterium_cylindroides0.0880.0001470.000406
speciesAnaerostipes_unclassified-0.0870.0001720.000472
speciesMegamonas_hypermegale-0.0860.0001890.000515
speciesErysipelotrichaceae_bacterium_2_2_44A0.0860.000190.000515
speciesBacteroides_thetaiotaomicron-0.0860.0001910.000515
speciesBilophila_wadsworthia0.0860.0002110.000566
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0850.0002160.000576
speciesPropionibacterium_freudenreichii0.0840.0002630.000697
classDeltaproteobacteria0.0840.0002770.000722
orderDesulfovibrionales0.0840.0002770.000722
familyDesulfovibrionaceae0.0840.0002770.000722
speciesLactobacillus_salivarius-0.0840.0002790.000724
genusPropionibacterium0.0830.0003030.000782
speciesLactobacillus_mucosae-0.0830.0003370.000864
genusErysipelotrichaceae_noname0.0830.0003510.000896
speciesBacteroides_stercoris-0.0820.0004050.00103
genusMethanosphaera0.0820.0004190.00105
speciesMethanosphaera_stadtmanae0.0820.0004190.00105
speciesClostridium_sp_L2_500.080.0005160.00129
speciesBacteroides_uniformis0.080.0005310.00132
classErysipelotrichia0.080.0005720.0014
orderErysipelotrichales0.080.0005720.0014
familyErysipelotrichaceae0.080.0005720.0014
genusLachnospiraceae_noname0.0790.000590.00144
speciesCoprobacillus_sp_D60.0790.0006550.00159
genusAnaerostipes0.0780.0007820.00188
speciesAlistipes_sp_HGB50.0760.001050.00252
speciesHoldemania_unclassified0.0730.001540.00364
phylumActinobacteria0.0730.001550.00364
classActinobacteria0.0730.001550.00364
speciesBacteroides_oleiciplenus-0.0730.001550.00364
familyPropionibacteriaceae0.0730.001590.00372
speciesClostridium_perfringens-0.0730.00160.00372
genusBilophila0.0730.001650.0038
speciesDialister_invisus0.0730.001650.0038
speciesRuminococcus_champanellensis0.0730.001690.00387
speciesCampylobacter_concisus-0.0710.002180.00497
genusDialister0.0710.002260.00513
speciesBilophila_unclassified0.070.002310.00522
speciesMegasphaera_unclassified-0.070.002490.0056
speciesMegamonas_funiformis-0.070.002560.00573
speciesPrevotella_buccae-0.070.002590.00577
speciesPorphyromonas_uenonis0.0680.003250.00719
speciesClostridium_bolteae-0.0680.003260.00719
classNegativicutes-0.0670.00390.00852
orderSelenomonadales-0.0670.00390.00852
speciesLactococcus_phage_phi70.0670.003960.00861
speciesLactobacillus_delbrueckii0.0660.004540.00983
speciesParaprevotella_xylaniphila0.0660.004570.00985
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0650.004930.0106
speciesLachnospiraceae_bacterium_1_1_57FAA0.0650.004950.0106
speciesClostridium_spiroforme0.0650.005260.0112
speciesLactococcus_phage_jm20.0630.006020.0127
speciesBifidobacterium_breve-0.0620.006950.0146
speciesProteus_mirabilis-0.0620.007290.0153
speciesOdoribacter_unclassified0.0620.007590.0159
genusButyricimonas0.0610.008320.0172
speciesButyricimonas_synergistica0.0610.008320.0172
genusEnterobacter-0.0610.008530.0176
speciesEubacterium_biforme0.060.008990.0184
speciesBifidobacterium_pseudocatenulatum-0.060.009640.0197
speciesStreptococcus_mitis_oralis_pneumoniae-0.060.009950.0202
speciesBacteroides_fragilis-0.060.009950.0202
speciesStreptococcus_pasteurianus-0.0590.01090.022
genusProteus-0.0590.01130.0227
speciesEnterobacter_cloacae-0.0580.01260.0252
speciesParabacteroides_merdae0.0570.01360.0271
speciesBlautia_hydrogenotrophica0.0570.01420.0282
familyClostridiales_Family_XI_Incertae_Sedis0.0560.01540.0304
speciesPeptostreptococcaceae_noname_unclassified0.0560.01580.0311
genusPeptoniphilus0.0550.01720.0337
genusFlavonifractor-0.0550.01790.0348
speciesFlavonifractor_plautii-0.0550.01790.0348
speciesPeptostreptococcus_anaerobius0.0550.01810.035
familySutterellaceae-0.0550.01840.0353
speciesBlautia_producta-0.0540.01840.0353
genusActinobacillus-0.0540.01960.0373
speciesActinobacillus_unclassified-0.0540.01960.0373
speciesStreptococcus_lutetiensis-0.0540.01970.0373
phylumSynergistetes0.0530.02080.0388
classSynergistia0.0530.02080.0388
orderSynergistales0.0530.02080.0388
familySynergistaceae0.0530.02080.0388
speciesBacteroides_ovatus-0.0530.0230.0427
speciesBacteroides_coprocola-0.0530.02310.0428
familyPrevotellaceae-0.0520.02360.0435
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0520.02370.0435
speciesFusobacterium_nucleatum-0.0520.02450.0448
speciesParaprevotella_unclassified0.0520.0250.0456
genusBifidobacterium0.0520.02540.0461
speciesBifidobacterium_longum0.0520.02560.0463
genusWeissella-0.0510.02650.0477
genusMorganella-0.0510.02790.0499
speciesMorganella_morganii-0.0510.02790.0499
orderBifidobacteriales0.0510.02810.0499
familyBifidobacteriaceae0.0510.02810.0499
speciesEggerthella_lenta0.050.02940.052
speciesParaprevotella_clara0.050.02950.052
genusParaprevotella0.050.03050.0535
speciesWeissella_confusa-0.050.03190.0557
speciesParabacteroides_unclassified-0.050.0320.0557
speciesLactobacillus_casei_paracasei0.0490.0340.059
speciesClostridium_bartlettii0.0490.0350.0605
familyPeptostreptococcaceae0.0480.03660.063
genusParvimonas0.0480.03890.0668
speciesParvimonas_unclassified0.0480.03920.067
familyBacillales_noname-0.0470.0410.0696
genusGemella-0.0470.0410.0696
familyMyoviridae-0.0470.04190.0709
speciesLactobacillus_sanfranciscensis-0.0460.04620.0779
genusTunalikevirus-0.0460.04710.0791
speciesBifidobacterium_animalis0.0450.04930.0825
speciesOscillibacter_sp_KLE_17450.0450.04970.0829
speciesClostridium_symbiosum-0.0450.0530.0877
speciesHaemophilus_sputorum-0.0450.05310.0877
speciesRothia_mucilaginosa-0.0450.05330.0877
speciesClostridium_clostridioforme-0.0450.05330.0877
speciesLachnospiraceae_bacterium_5_1_63FAA0.0440.05440.0892
speciesKlebsiella_phage_KP36-0.0440.05460.0892
speciesStreptococcus_anginosus-0.0430.06510.106
speciesBacteroides_coprophilus-0.0420.06790.11
speciesOscillibacter_sp_KLE_17280.0420.06810.11
speciesBacteroides_xylanisolvens-0.0420.06940.112
genusPeptostreptococcaceae_noname0.0420.06960.112
genusPyramidobacter0.0410.07570.121
speciesPyramidobacter_piscolens0.0410.07570.121
familyBurkholderiales_noname0.0410.07680.122
speciesSutterella_parvirubra-0.0410.0780.124
genusBurkholderiales_noname0.040.08010.126
speciesTuricibacter_unclassified0.040.08010.126
speciesBurkholderiales_bacterium_1_1_470.040.08010.126
orderAeromonadales-0.040.08290.13
genusPhascolarctobacterium0.040.08370.13
speciesPhascolarctobacterium_succinatutens0.040.08370.13
speciesBacteroides_barnesiae0.040.08440.131
speciesClostridium_citroniae-0.040.08510.131
genusParasutterella0.0390.09070.139
speciesParasutterella_excrementihominis0.0390.09070.139
genusTuricibacter0.0390.09120.139
speciesLactococcus_garvieae-0.0390.09240.141
speciesEubacterium_limosum0.0390.09320.141
speciesEubacterium_dolichum-0.0390.09510.144
speciesEnterobacter_aerogenes-0.0390.09590.145
speciesEubacterium_sp_3_1_310.0380.1020.153
speciesEscherichia_unclassified-0.0380.1050.157
familyLactobacillaceae-0.0370.1070.16
familyCampylobacteraceae0.0370.1080.161
classBetaproteobacteria-0.0370.110.163
speciesRoseburia_unclassified0.0370.1110.164
genusLeuconostoc0.0370.1140.167
speciesKlebsiella_sp_MS_92_3-0.0370.1140.167
speciesLactobacillus_amylovorus-0.0370.1140.167
familyAcidaminococcaceae0.0360.1160.17
genusParabacteroides0.0360.1220.178
speciesAggregatibacter_segnis-0.0360.1230.179
genusCampylobacter0.0360.1240.18
genusPeptostreptococcus-0.0350.1340.193
speciesBacteroides_dorei0.0340.1360.196
genusPantoea-0.0340.1370.196
speciesPantoea_unclassified-0.0340.1370.196
speciesBifidobacterium_angulatum0.0340.1420.202
speciesWeissella_cibaria-0.0340.1430.203
speciesClostridium_asparagiforme0.0340.1470.208
orderBurkholderiales-0.0330.1490.211
genusMyoviridae_noname-0.0330.1540.217
genusLactobacillus-0.0330.160.225
speciesParabacteroides_sp_D130.0320.1620.227
speciesHaemophilus_paraphrohaemolyticus-0.0320.1630.228
genusFaecalibacterium0.0320.1650.229
speciesFaecalibacterium_prausnitzii0.0320.1650.229
speciesLactobacillus_gasseri-0.0310.1830.253
genusAcidaminococcus-0.0310.1850.255
speciesAcidaminococcus_intestini-0.030.1930.266
speciesEnterococcus_faecalis-0.030.1970.27
speciesParabacteroides_johnsonii0.030.20.274
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.030.2010.274
orderBacillales-0.0290.2040.277
speciesCollinsella_unclassified-0.0290.2070.281
familyClostridiales_noname0.0290.2110.285
familyMicrococcaceae-0.0290.2130.287
speciesLactococcus_phage_936_sensu_lato0.0290.2140.287
speciesClostridium_hathewayi0.0290.2140.287
genusRothia-0.0290.2160.289
genusRoseburia0.0290.2170.289
speciesKlebsiella_unclassified-0.0280.2330.31
genusBlautia0.0270.2350.312
classEpsilonproteobacteria0.0270.2370.312
orderCampylobacterales0.0270.2370.312
speciesBacteroides_clarus0.0270.2410.317
orderPseudomonadales-0.0270.2420.317
speciesStreptococcus_infantarius-0.0270.2430.318
speciesEnterococcus_faecium0.0270.2470.322
speciesAcidaminococcus_unclassified-0.0270.2510.325
speciesStreptococcus_parasanguinis0.0270.2510.325
speciesBacteroides_finegoldii-0.0260.2530.327
genusCoriobacteriaceae_noname-0.0260.260.335
speciesErysipelotrichaceae_bacterium_3_1_53-0.0260.2630.338
speciesCitrobacter_unclassified-0.0260.2680.344
speciesRuminococcus_sp_JC3040.0260.270.345
speciesLactobacillus_oris-0.0250.2750.351
speciesPrevotella_bivia0.0250.2770.351
speciesParabacteroides_goldsteinii0.0250.2780.351
speciesLactobacillus_rhamnosus-0.0250.2790.351
speciesCollinsella_intestinalis-0.0250.2790.351
genusCatenibacterium0.0250.280.351
speciesCatenibacterium_mitsuokai0.0250.280.351
genusClostridiales_noname0.0250.2830.354
speciesBacteroides_sp_3_1_19-0.0250.2840.355
speciesEggerthella_unclassified-0.0250.2850.355
speciesBifidobacterium_dentium-0.0240.2920.363
speciesCoriobacteriaceae_bacterium_phI-0.0240.2930.363
genusAcidaminococcaceae_unclassified0.0240.30.37
speciesStreptococcus_mutans-0.0240.30.37
genusAggregatibacter-0.0240.3030.372
speciesRoseburia_inulinivorans-0.0220.3310.406
genusStaphylococcus0.0220.3460.423
orderActinomycetales0.0210.3530.431
speciesLactobacillus_crispatus-0.0210.3610.439
speciesMegasphaera_elsdenii-0.0210.370.449
genusActinomyces0.0210.3730.451
speciesDesulfovibrio_piger0.020.3790.458
speciesLactobacillus_reuteri0.020.3840.462
familySuccinivibrionaceae-0.020.3990.479
genusButyricicoccus-0.0190.4040.483
speciesButyricicoccus_pullicaecorum-0.0190.4040.483
speciesClostridium_sp_ATCC_BAA_442-0.0190.4080.486
speciesLactobacillus_fermentum-0.0190.4170.496
speciesTuricibacter_sanguinis0.0190.4230.502
genusSuccinatimonas-0.0180.4380.517
speciesSuccinatimonas_hippei-0.0180.4380.517
familyActinomycetaceae0.0170.4510.531
speciesSutterella_wadsworthensis0.0170.4580.538
genusCitrobacter-0.0170.4620.541
genusEggerthella-0.0170.4660.543
speciesBifidobacterium_catenulatum0.0170.4670.543
speciesDorea_unclassified-0.0170.4670.543
speciesClostridium_sp_KLE_1755-0.0170.4710.546
speciesClostridiales_bacterium_1_7_47FAA-0.0160.4810.556
speciesCollinsella_tanakaei-0.0160.4970.573
familyStaphylococcaceae0.0160.4980.573
speciesStreptococcus_salivarius-0.0160.5010.575
orderViruses_noname0.0150.5060.58
speciesParabacteroides_distasonis-0.0150.5260.601
speciesBacteroides_salyersiae-0.0150.5270.601
genusSolobacterium0.0140.5320.604
speciesSolobacterium_moorei0.0140.5320.604
speciesBacteroides_massiliensis-0.0140.5350.606
speciesStreptococcus_sanguinis-0.0140.5410.611
speciesCitrobacter_freundii-0.0140.5420.611
speciesLeuconostoc_lactis-0.0140.5440.611
speciesLachnospiraceae_bacterium_5_1_57FAA0.0140.5520.619
speciesLactobacillus_ruminis-0.0140.5540.62
speciesEnterobacteria_phage_HK544-0.0130.5690.635
speciesBacteroides_salanitronis-0.0130.5750.64
classBacilli-0.0130.5840.649
speciesPeptostreptococcus_stomatis-0.0120.5890.653
speciesBacteroides_eggerthii0.0120.5970.66
orderLactobacillales-0.0120.6050.667
speciesBacteroides_sp_1_1_60.0120.6090.67
speciesBacteroides_caccae0.0110.6370.699
speciesBacteroides_nordii-0.0110.640.701
speciesBacteroides_sp_2_1_220.0110.6440.704
speciesBacteroides_vulgatus-0.010.6650.725
familyViruses_noname0.010.6770.735
genusViruses_noname0.010.6770.735
speciesBifidobacterium_bifidum-0.0090.6850.741
speciesStreptococcus_gordonii-0.0090.6860.741
speciesBacteroides_fluxus-0.0090.6970.751
speciesEggerthella_sp_1_3_56FAA-0.0090.7050.758
speciesLactobacillus_acidophilus0.0080.7160.766
genusClostridiaceae_noname0.0080.7170.766
speciesClostridiaceae_bacterium_JC1180.0080.7170.766
genusSutterella0.0080.7250.772
genusStreptococcus-0.0080.7260.772
speciesStreptococcus_phage_Sfi210.0080.7360.781
speciesDialister_succinatiphilus0.0080.7380.781
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0080.7410.782
genusClostridium0.0070.7750.817
speciesSlackia_piriformis0.0060.790.83
speciesLactococcus_phage_bIL670.0060.7970.836
speciesHoldemania_sp_AP20.0060.8060.844
speciesMitsuokella_multacida-0.0040.8570.895
speciesBacteroides_faecis-0.0040.8670.903
genusSlackia0.0040.8730.908
speciesAlistipes_unclassified0.0030.8820.915
familyClostridiaceae0.0030.8880.917
familyPodoviridae0.0030.890.917
genusSutterellaceae_unclassified0.0030.890.917
genusLambdalikevirus-0.0030.90.925
genusEnterococcus-0.0030.9130.937
speciesAcidaminococcus_fermentans-0.0020.9160.938
speciesStreptococcus_vestibularis-0.0020.9320.951
speciesBacteroides_sp_4_3_47FAA0.0020.9330.951
familyLeuconostocaceae0.0020.9470.961
familyEnterococcaceae-0.0020.9470.961
speciesStreptococcus_australis0.0010.950.962
speciesBacteroides_intestinalis-0.0010.9540.962
familyStreptococcaceae-0.0010.9550.962
speciesLactobacillus_vaginalis-0.0010.9560.962
speciesLactobacillus_plantarum0.0010.960.964
speciesKlebsiella_oxytoca-0.0010.9620.964
speciesGemella_morbillorum0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17667.74857469569e-075.14541949073e-050.0144643025579878729.217
Liver cirrhosisChina1201145.84013685239e-063.04457354974e-050.02145477209641237341.5634
Ulcerative colitisSpain78662.20660709736e-055.14541949073e-050.0464308235247458215.1151
Rheumatoid arthritisChina127984.25773703806e-053.05060873073e-050.117132606847596819.902
Type II diabetesSweden53920.0003613982973750.0005191506032380.3919322913841276343.2205
Type II diabetesChina1831852.0514325745e-052.02045250449e-050.6668145924232441180.6735
Colorectal cancerAustria64357.30383280885e-055.43195029012e-050.7437479003542402081.2695
Type II diabetesDenmark752770.0001438552837790.0002937127275050.8355002031682734389.6286
ObesityDenmark1691230.0001848798976880.0004471884302280.9437693895692925596.1987
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382