MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-03 22:26:46 PST
Job id & description: 1677, gna2
Query type: protein
Count queries & homologs: 85, 56
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
UniRef90_A0A139TME1150362CompleteK01197NOG69445Verrucomicrobiaunknown100.0100.097.27
UniRef90_A0A1C5XP86210868CompleteK01197NOG69445unknownunknown100.0100.098.13
UniRef90_A0A139TME1150467CompleteK01197NOG69445VerrucomicrobiaAkkermansia100.0100.085.53
UniRef90_B7B9J0229060CompleteK01197NOG69445BacteroidetesParabacteroides100.0100.099.04
UniRef90_A0A139TME1150243CompleteK01197NOG69445VerrucomicrobiaAkkermansia100.0100.084.38
UniRef90_A0A139TME1150349CompleteK01197NOG69445VerrucomicrobiaAkkermansia100.0100.084.17
UniRef90_A0A1C5XP86225464CompleteK01197NOG69445unknownunknown97.89100.097.37
UniRef90_A0A1C5XP86195984CompleteK01197NOG69445unknownunknown99.8897.7194.26
UniRef90_R7PAD6231458CompleteK01197NOG69445unknownunknown100.094.5799.36
UniRef90_A0A1C5XP86210865CompleteK01197NOG69445unknownunknown100.0100.089.11
UniRef90_B7B9J0229628CompleteK01197NOG69445BacteroidetesParabacteroides100.0100.090.62
UniRef90_A0A1C5XP86183658CompleteK01197NOG69445BacteroidetesBacteroides99.8895.6286.87
UniRef90_A0A1C5XP86211657CompleteK01197NOG69445BacteroidetesBacteroides99.8899.8886.64
UniRef90_A0A1C5XP86171715CompleteK01197NOG69445BacteroidetesBacteroides99.8893.4286.52
UniRef90_B7B9J0228988CompleteK01197NOG69445BacteroidetesParabacteroides100.0100.090.5
UniRef90_R5GVV4328007CompleteK01197NOG69445unknownunknown100.0100.099.73
UniRef90_A0A416GE76332566CompleteK01197NOG69445unknownunknown100.0100.099.73
UniRef90_R6FHS5326802CompleteK01197NOG69445unknownunknown100.0100.0100.0
UniRef90_Q89ZI2330338CompleteK01197NOG69445BacteroidetesBacteroides100.0100.0100.0
UniRef90_R5S3E6326617CompleteK01197NOG69445unknownunknown100.0100.0100.0
UniRef90_U6RP73330296CompleteK01197NOG69445unknownunknown100.0100.099.86
UniRef90_A0A015W8Y8327940CompleteK01197NOG69445BacteroidetesBacteroides100.0100.099.32
UniRef90_A0A374VER7333964CompleteK01197NOG69445unknownunknown100.0100.0100.0
UniRef90_S0FC27327900CompleteK01197NOG69445BacteroidetesBacteroides100.0100.099.73
UniRef90_A0A4S2FJL6331345CompleteK01197NOG69445Bacteroidetesunknown100.0100.099.05
UniRef90_B7B9J0228565CompleteK01197NOG69445BacteroidetesParabacteroides99.8899.8888.1
UniRef90_A0A1C5SAV6329199CompleteK01197NOG69445unknownunknown100.0100.097.83
UniRef90_A0A1Y3VRM0330907CompleteK01197NOG69445unknownunknown100.0100.098.64
UniRef90_A0A3Q9IRI3341940Lack 3'-endK01197NOG69445unknownunknown99.18100.099.18
UniRef90_U6RP73330438CompleteK01197NOG69445unknownunknown100.0100.095.39
UniRef90_A0A1Y3VRM0330624CompleteK01197NOG69445unknownunknown100.0100.096.07
UniRef90_A0A139KH43308993CompleteK01197NOG69445BacteroidetesBacteroides95.2392.5899.71
UniRef90_K9EED1326732CompleteK01197NOG69445unknownunknown97.7599.8693.5
UniRef90_Q89ZI2330433CompleteK01197NOG69445BacteroidetesBacteroides100.0100.091.72
UniRef90_A0A015W8Y8327977CompleteK01197NOG69445BacteroidetesBacteroides100.0100.093.1
UniRef90_A0A1C5SAV6343321CompleteK01197NOG69445unknownunknown98.64100.093.13
UniRef90_A0A1C5SAV6342762CompleteK01197NOG69445unknownunknown98.64100.090.8
UniRef90_A0A1C5SAV6342627CompleteK01197NOG69445unknownunknown98.64100.089.29
UniRef90_A0A4S2FJL6330276CompleteK01197NOG69445BacteroidetesBacteroides100.0100.086.97
UniRef90_R5S3E6328658CompleteK01197NOG69445unknownunknown100.0100.086.35
UniRef90_A0A4S2B6W0305034CompleteK01197NOG69445BacteroidetesBacteroides100.097.186.31
UniRef90_A0A374VER7333432CompleteK01197NOG69445unknownunknown100.0100.086.8
UniRef90_A0A4S2FJL6331267CompleteK01197NOG69445unknownunknown100.0100.083.18
UniRef90_R5S3E6328402CompleteK01197NOG69445unknownunknown100.0100.085.27
UniRef90_Q89ZI2328377Lack 5'-endK01197NOG69445BacteroidetesBacteroides100.099.7382.09
UniRef90_K9EED1326343CompleteK01197NOG69445unknownunknown97.8899.8782.3
UniRef90_K9EED1325778CompleteK01197NOG69445unknownunknown97.8899.8781.89
UniRef90_K9EED1326405CompleteK01197NOG69445unknownunknown97.8899.8782.16
UniRef90_Q89ZI2327404CompleteK01197NOG69445unknownunknown100.0100.080.14
UniRef90_R5S3E6350691CompleteK01197NOG69445unknownunknown97.5799.8685.04
UniRef90_A0A353A1D8330286CompleteK01197NOG69445unknownunknown99.8699.8683.97
UniRef90_R6FHS5325943CompleteK01197NOG69445unknownunknown99.8699.7383.76
UniRef90_R5CGB7610551CompleteK01197NOG69445unknownunknown100.0100.0100.0
UniRef90_A0A1C5QAM5430263Lack 5'-endK01187COG1501BacteroidetesBacteroides100.097.3282.11
UniRef90_UPI000F0BA5D4785938Lack 3'-endK01197NOG69445VerrucomicrobiaAkkermansia83.78100.098.51
UniRef90_R5CGB7666689CompleteK01197NOG69445unknownunknown94.4297.0386.92
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.8620.00.0
genusBacteroides0.8620.00.0
classBacteroidia0.647.87e-2167.5e-214
orderBacteroidales0.647.87e-2167.5e-214
phylumBacteroidetes0.647.94e-2167.5e-214
phylumFirmicutes-0.5861.19e-1729.36e-171
classClostridia-0.5121.96e-1251.16e-123
orderClostridiales-0.5121.96e-1251.16e-123
genusDorea-0.4941.9e-1159.96e-114
genusParabacteroides0.4822.33e-1091.1e-107
speciesDorea_longicatena-0.4762.68e-1061.15e-104
genusCoprococcus-0.4696.33e-1032.49e-101
speciesBacteroides_thetaiotaomicron0.4683.19e-1021.16e-100
familyRuminococcaceae-0.4659.17e-1013.09e-99
speciesRuminococcus_obeum-0.4532.06e-956.48e-94
speciesCoprococcus_catus-0.4491.43e-934.22e-92
orderCoriobacteriales-0.4483.31e-938.68e-92
familyCoriobacteriaceae-0.4483.31e-938.68e-92
speciesBacteroides_ovatus0.4443.62e-918.99e-90
phylumActinobacteria-0.4423.18e-907.15e-89
classActinobacteria-0.4423.18e-907.15e-89
speciesCollinsella_aerofaciens-0.4311.14e-852.45e-84
speciesBacteroides_vulgatus0.4212.63e-815.4e-80
speciesCoprococcus_comes-0.428.75e-811.72e-79
genusCollinsella-0.4187.64e-801.44e-78
speciesDorea_formicigenerans-0.4021.21e-732.2e-72
familyPorphyromonadaceae0.4013.04e-735.31e-72
speciesBifidobacterium_adolescentis-0.3942.12e-703.57e-69
speciesBacteroides_uniformis0.3862.56e-674.17e-66
speciesEubacterium_hallii-0.3841.18e-661.86e-65
orderBifidobacteriales-0.3656.64e-609.79e-59
familyBifidobacteriaceae-0.3656.64e-609.79e-59
genusBifidobacterium-0.3641.42e-592.03e-58
genusFlavonifractor0.3631.72e-592.32e-58
speciesFlavonifractor_plautii0.3631.72e-592.32e-58
speciesSubdoligranulum_unclassified-0.3617.96e-591.04e-57
familyLachnospiraceae-0.361.96e-582.5e-57
genusSubdoligranulum-0.363.66e-584.55e-57
speciesClostridium_bolteae0.3521.15e-551.39e-54
speciesBacteroides_xylanisolvens0.3513.47e-554.09e-54
classMethanobacteria-0.3431.28e-521.41e-51
orderMethanobacteriales-0.3431.28e-521.41e-51
familyMethanobacteriaceae-0.3431.28e-521.41e-51
speciesMethanobrevibacter_smithii-0.3421.51e-521.62e-51
genusMethanobrevibacter-0.3391.6e-511.68e-50
genusRuminococcus-0.3352.09e-502.14e-49
genusOlsenella-0.3344.28e-504.3e-49
speciesEubacterium_ramulus-0.3345.09e-505.01e-49
speciesOlsenella_unclassified-0.3331.03e-499.92e-49
speciesClostridiales_bacterium_1_7_47FAA0.3314.33e-494.09e-48
phylumEuryarchaeota-0.331.02e-489.44e-48
speciesEubacterium_biforme-0.3214.24e-463.85e-45
classErysipelotrichia-0.3178.4e-457.21e-44
orderErysipelotrichales-0.3178.4e-457.21e-44
familyErysipelotrichaceae-0.3178.4e-457.21e-44
speciesBacteroides_fragilis0.3161.11e-449.36e-44
speciesClostridium_symbiosum0.3121.38e-431.14e-42
speciesRuminococcus_gnavus0.3113.33e-432.71e-42
speciesRuminococcus_sp_5_1_39BFAA-0.3069.73e-427.78e-41
speciesAnaerostipes_hadrus-0.33.83e-403.01e-39
genusErysipelotrichaceae_noname-0.2998.17e-406.32e-39
orderLactobacillales-0.2988.95e-406.81e-39
classBacilli-0.2972.14e-391.6e-38
speciesEubacterium_siraeum-0.2957.33e-395.41e-38
speciesClostridium_citroniae0.2932.78e-382.02e-37
familyEubacteriaceae-0.2852.94e-362.1e-35
genusEubacterium-0.2853.71e-362.61e-35
genusAdlercreutzia-0.2821.78e-351.22e-34
speciesAdlercreutzia_equolifaciens-0.2821.78e-351.22e-34
genusActinomyces-0.2757.21e-344.86e-33
phylumFusobacteria0.2758.66e-345.6e-33
classFusobacteriia0.2758.66e-345.6e-33
orderFusobacteriales0.2758.66e-345.6e-33
familyActinomycetaceae-0.2741.53e-339.76e-33
speciesClostridium_hathewayi0.2732.77e-331.74e-32
familyFusobacteriaceae0.2719.71e-336.03e-32
speciesBifidobacterium_longum-0.2683.93e-322.41e-31
speciesStreptococcus_thermophilus-0.2677.54e-324.56e-31
familyClostridiales_noname0.2661.2e-317.17e-31
orderActinomycetales-0.2651.72e-311.01e-30
genusFusobacterium0.2652.39e-311.39e-30
speciesBacteroides_stercoris0.2642.87e-311.65e-30
genusCatenibacterium-0.2561.89e-291.06e-28
speciesCatenibacterium_mitsuokai-0.2561.89e-291.06e-28
familyStreptococcaceae-0.2521.91e-281.06e-27
speciesFusobacterium_ulcerans0.254.75e-282.61e-27
speciesClostridium_nexile0.256.11e-283.31e-27
familyLactobacillaceae-0.2449.64e-275.17e-26
genusButyrivibrio-0.2431.32e-267e-26
genusStreptococcus-0.2431.58e-268.29e-26
genusLactobacillus-0.2414.65e-262.41e-25
genusClostridiales_noname0.2331.89e-249.7e-24
speciesMethanobrevibacter_unclassified-0.2331.97e-241e-23
speciesEubacterium_rectale-0.238.03e-244.03e-23
genusMitsuokella-0.238.89e-244.42e-23
speciesMitsuokella_unclassified-0.2291.32e-236.49e-23
speciesStreptococcus_parasanguinis-0.2231.36e-226.62e-22
speciesParabacteroides_distasonis0.2231.74e-228.38e-22
speciesBacteroides_nordii0.2213.3e-221.57e-21
speciesCoprococcus_sp_ART55_1-0.2213.34e-221.58e-21
speciesClostridium_asparagiforme0.227.4e-223.46e-21
speciesRuminococcus_bromii-0.2191.15e-215.32e-21
genusAnaerostipes-0.2181.6e-217.33e-21
speciesAnaerotruncus_unclassified-0.2181.72e-217.81e-21
speciesStreptococcus_salivarius-0.2172.77e-211.25e-20
speciesClostridium_clostridioforme0.2122.05e-209.13e-20
speciesButyrivibrio_crossotus-0.2113.09e-201.36e-19
speciesBilophila_unclassified0.214.03e-201.76e-19
genusBilophila0.214.14e-201.79e-19
speciesFusobacterium_varium0.2062.44e-191.05e-18
genusPhascolarctobacterium-0.2052.95e-191.24e-18
speciesPhascolarctobacterium_succinatutens-0.2052.95e-191.24e-18
speciesStreptococcus_sanguinis-0.2038.46e-193.53e-18
speciesLachnospiraceae_bacterium_5_1_63FAA-0.2038.62e-193.57e-18
familyPeptostreptococcaceae-0.2039.26e-193.8e-18
genusPeptostreptococcaceae_noname-0.2021.06e-184.31e-18
familyPrevotellaceae-0.2021.14e-184.6e-18
speciesPrevotella_copri-0.22.8e-181.12e-17
speciesClostridium_sp_L2_50-0.1993.36e-181.33e-17
classBetaproteobacteria0.1961.08e-174.25e-17
speciesAnaerostipes_unclassified0.1942.14e-178.35e-17
orderBurkholderiales0.1933.48e-171.35e-16
speciesCoprococcus_eutactus-0.1891.63e-166.25e-16
speciesClostridium_leptum-0.1882.16e-168.22e-16
speciesFusobacterium_mortiferum0.1873.09e-161.17e-15
speciesRuminococcus_torques-0.1865.17e-161.94e-15
speciesParabacteroides_unclassified0.1858.14e-163.03e-15
speciesCoprobacillus_unclassified0.1822.03e-157.49e-15
speciesStreptococcus_vestibularis-0.1822.41e-158.82e-15
genusMethanosphaera-0.1812.61e-159.4e-15
speciesMethanosphaera_stadtmanae-0.1812.61e-159.4e-15
genusRothia-0.1812.92e-151.04e-14
familyMicrococcaceae-0.1813.06e-151.09e-14
speciesBilophila_wadsworthia0.1788.59e-153.03e-14
speciesRuminococcus_callidus-0.1771.28e-144.48e-14
speciesLactobacillus_rhamnosus-0.1761.61e-145.59e-14
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1761.76e-146.06e-14
speciesLachnospiraceae_bacterium_6_1_63FAA0.1752.19e-147.49e-14
speciesBifidobacterium_catenulatum-0.1752.53e-148.59e-14
orderBacillales-0.1752.92e-149.77e-14
speciesRoseburia_hominis-0.1752.92e-149.77e-14
genusBlautia-0.1743.85e-141.26e-13
genusLactococcus-0.1743.9e-141.26e-13
familyBacillales_noname-0.1743.91e-141.26e-13
genusGemella-0.1743.91e-141.26e-13
speciesBifidobacterium_animalis-0.1743.91e-141.26e-13
familyOscillospiraceae0.1743.97e-141.27e-13
genusOscillibacter0.1743.97e-141.27e-13
speciesBacteroides_caccae0.1734.33e-141.37e-13
speciesBacteroides_massiliensis0.1735.51e-141.73e-13
speciesRothia_mucilaginosa-0.1718.46e-142.64e-13
genusFaecalibacterium-0.1718.59e-142.65e-13
speciesFaecalibacterium_prausnitzii-0.1718.59e-142.65e-13
speciesBacteroides_dorei0.1711.01e-133.1e-13
speciesMitsuokella_multacida-0.1711.11e-133.38e-13
genusSolobacterium-0.171.37e-134.12e-13
speciesSolobacterium_moorei-0.171.37e-134.12e-13
genusCoprobacillus0.171.49e-134.45e-13
familyRikenellaceae0.171.59e-134.69e-13
genusAlistipes0.171.59e-134.69e-13
familySutterellaceae0.1682.65e-137.77e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1682.94e-138.57e-13
speciesStreptococcus_gordonii-0.1665.4e-131.56e-12
classDeltaproteobacteria0.1657.68e-132.18e-12
orderDesulfovibrionales0.1657.68e-132.18e-12
familyDesulfovibrionaceae0.1657.68e-132.18e-12
speciesStreptococcus_mutans-0.1649.8e-132.77e-12
genusPrevotella-0.1631.28e-123.6e-12
speciesPropionibacterium_freudenreichii-0.1631.33e-123.71e-12
speciesPeptostreptococcaceae_noname_unclassified-0.163.21e-128.91e-12
genusLeuconostoc-0.1594.62e-121.28e-11
speciesAnaerotruncus_colihominis0.1595.03e-121.38e-11
speciesOdoribacter_splanchnicus0.1586.86e-121.87e-11
speciesAlistipes_senegalensis-0.1561.21e-113.28e-11
genusTuricibacter-0.1541.97e-115.31e-11
phylumVerrucomicrobia-0.1533.03e-117.9e-11
classVerrucomicrobiae-0.1533.03e-117.9e-11
orderVerrucomicrobiales-0.1533.03e-117.9e-11
familyVerrucomicrobiaceae-0.1533.03e-117.9e-11
genusAkkermansia-0.1533.03e-117.9e-11
speciesAkkermansia_muciniphila-0.1533.03e-117.9e-11
speciesTuricibacter_sanguinis-0.1533.12e-118.09e-11
speciesOscillibacter_unclassified0.1533.29e-118.49e-11
speciesLachnospiraceae_bacterium_2_1_46FAA0.1533.32e-118.52e-11
speciesLactococcus_lactis-0.1523.55e-119.06e-11
phylumProteobacteria0.1523.6e-119.14e-11
speciesStreptococcus_anginosus-0.1524.04e-111.02e-10
speciesBacteroides_pectinophilus-0.1524.43e-111.11e-10
genusParaprevotella-0.1514.69e-111.17e-10
speciesParaprevotella_unclassified-0.1515.37e-111.33e-10
speciesClostridium_sp_ATCC_BAA_4420.1515.6e-111.38e-10
genusPropionibacterium-0.156.34e-111.56e-10
genusClostridiaceae_noname0.157.17e-111.74e-10
speciesClostridiaceae_bacterium_JC1180.157.17e-111.74e-10
speciesBacteroides_plebeius0.1498.88e-112.15e-10
phylumViruses_noname-0.1499.16e-112.19e-10
classViruses_noname-0.1499.16e-112.19e-10
speciesLactobacillus_ruminis-0.1481.12e-102.67e-10
genusBurkholderiales_noname0.1471.52e-103.59e-10
speciesBurkholderiales_bacterium_1_1_470.1471.52e-103.59e-10
familyBurkholderiales_noname0.1471.57e-103.69e-10
speciesDialister_succinatiphilus-0.1471.91e-104.46e-10
speciesBifidobacterium_dentium-0.1461.96e-104.56e-10
familyAcidaminococcaceae-0.1462.19e-105.07e-10
genusOdoribacter0.1452.67e-106.15e-10
familyClostridiaceae0.1427.18e-101.65e-09
genusGordonibacter-0.1419.69e-102.2e-09
speciesGordonibacter_pamelaeae-0.1419.69e-102.2e-09
genusParasutterella0.141.11e-092.49e-09
speciesParasutterella_excrementihominis0.141.11e-092.49e-09
familyEnterococcaceae-0.141.29e-092.89e-09
speciesLactobacillus_delbrueckii-0.141.31e-092.92e-09
genusClostridium0.141.33e-092.95e-09
speciesClostridium_bartlettii-0.1391.54e-093.4e-09
genusEnterococcus-0.1391.73e-093.8e-09
speciesLactococcus_phage_P680-0.1391.75e-093.82e-09
speciesErysipelotrichaceae_bacterium_21_3-0.1391.79e-093.89e-09
genusPseudoflavonifractor-0.1372.61e-095.63e-09
speciesPseudoflavonifractor_capillosus-0.1372.61e-095.63e-09
speciesTuricibacter_unclassified-0.1372.71e-095.81e-09
speciesRuminococcus_sp_JC304-0.1372.87e-096.13e-09
speciesRuminococcus_champanellensis-0.1363.44e-097.31e-09
genusLachnospiraceae_noname-0.1363.74e-097.92e-09
speciesClostridium_ramosum0.1363.99e-098.41e-09
speciesEggerthella_unclassified0.1355.17e-091.08e-08
speciesLactobacillus_casei_paracasei-0.1346.24e-091.3e-08
speciesRuminococcus_lactaris-0.1346.34e-091.32e-08
speciesParaprevotella_clara-0.1329.59e-091.98e-08
speciesParabacteroides_merdae0.1329.59e-091.98e-08
speciesEubacterium_ventriosum-0.1321.07e-082.2e-08
genusBarnesiella-0.1311.41e-082.87e-08
speciesBarnesiella_intestinihominis-0.1311.41e-082.87e-08
genusSiphoviridae_noname-0.131.6e-083.24e-08
speciesDesulfovibrio_piger-0.131.69e-083.41e-08
speciesDorea_unclassified0.1291.92e-083.86e-08
speciesEnterococcus_faecium-0.1282.58e-085.16e-08
speciesBifidobacterium_bifidum-0.1283.1e-086.17e-08
speciesLachnospiraceae_bacterium_1_4_56FAA0.1273.69e-087.32e-08
familyLeuconostocaceae-0.1273.75e-087.41e-08
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1265.12e-081.01e-07
speciesBacteroides_oleiciplenus0.1255.89e-081.15e-07
familySiphoviridae-0.1246.9e-081.35e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1247.09e-081.38e-07
speciesBacteroides_cellulosilyticus0.1248.02e-081.55e-07
speciesPrevotella_buccae0.121.88e-073.62e-07
genusEggerthella0.1192.54e-074.87e-07
speciesParabacteroides_goldsteinii0.1182.92e-075.58e-07
speciesStreptococcus_mitis_oralis_pneumoniae-0.1183.44e-076.55e-07
genusAnaerotruncus-0.1156.21e-071.18e-06
speciesStreptococcus_australis-0.1156.27e-071.18e-06
speciesBacteroides_salyersiae0.1147.25e-071.36e-06
speciesEubacterium_dolichum0.1121.24e-062.32e-06
genusDialister-0.1111.46e-062.72e-06
speciesParaprevotella_xylaniphila-0.1111.59e-062.95e-06
orderCaudovirales-0.1111.6e-062.96e-06
speciesKlebsiella_pneumoniae0.111.87e-063.45e-06
speciesOscillibacter_sp_KLE_17450.111.91e-063.51e-06
speciesEubacterium_sp_3_1_310.1092.16e-063.95e-06
speciesEubacterium_cylindroides-0.1082.62e-064.77e-06
speciesBacteroides_sp_2_1_220.1082.66e-064.83e-06
speciesStreptococcus_pasteurianus0.1083.05e-065.52e-06
speciesMegamonas_rupellensis0.1083.12e-065.62e-06
speciesOscillibacter_sp_KLE_17280.1073.56e-066.39e-06
speciesLactobacillus_gasseri-0.1073.77e-066.74e-06
familyPropionibacteriaceae-0.1046.51e-061.16e-05
genusOxalobacter-0.1046.67e-061.18e-05
speciesOxalobacter_formigenes-0.1046.67e-061.18e-05
speciesBacteroides_intestinalis0.1047.27e-061.28e-05
familyOxalobacteraceae-0.1037.53e-061.32e-05
speciesEnterococcus_faecalis-0.1029.5e-061.66e-05
classNegativicutes-0.1029.66e-061.68e-05
orderSelenomonadales-0.1029.66e-061.68e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1011.18e-052.04e-05
genusKlebsiella0.0991.63e-052.81e-05
genusParvimonas-0.0991.8e-053.08e-05
speciesParvimonas_unclassified-0.0991.8e-053.08e-05
speciesButyrivibrio_unclassified-0.0991.87e-053.19e-05
speciesMegasphaera_micronuciformis0.0972.55e-054.33e-05
genusButyricimonas0.0972.87e-054.84e-05
speciesButyricimonas_synergistica0.0972.87e-054.84e-05
speciesLactobacillus_plantarum-0.0953.59e-056.03e-05
orderViruses_noname-0.0954.06e-056.8e-05
genusDesulfovibrio-0.0954.13e-056.89e-05
speciesBacteroides_finegoldii0.0944.31e-057.16e-05
familyBacteroidales_noname-0.0935.19e-058.54e-05
genusBacteroidales_noname-0.0935.19e-058.54e-05
speciesBacteroidales_bacterium_ph8-0.0935.19e-058.54e-05
speciesAlistipes_putredinis0.0935.65e-059.26e-05
genusMegamonas0.0926.63e-050.000108
speciesMegamonas_unclassified0.0926.75e-050.00011
speciesEggerthella_sp_1_3_56FAA-0.0927.31e-050.000119
genusHaemophilus0.099.26e-050.00015
speciesParabacteroides_johnsonii0.099.61e-050.000155
speciesEscherichia_coli0.099.9e-050.000159
orderPasteurellales0.099.97e-050.000159
familyPasteurellaceae0.099.97e-050.000159
speciesHaemophilus_parainfluenzae0.0890.0001150.000183
speciesPrevotella_bivia0.0880.000130.000206
speciesEubacterium_eligens-0.0880.0001330.00021
genusPeptostreptococcus-0.0870.0001640.000258
speciesBacteroides_clarus0.0870.0001740.000273
speciesGemella_morbillorum-0.0870.0001760.000275
speciesLactococcus_phage_jm2-0.0860.000210.000327
speciesCollinsella_intestinalis0.0840.0002830.000439
speciesSutterella_parvirubra0.0830.0003050.000472
speciesRoseburia_unclassified-0.0830.0003080.000475
genusEscherichia0.0830.0003270.000503
speciesBifidobacterium_angulatum-0.0820.0004010.000615
speciesSutterella_wadsworthensis-0.0810.0004230.000646
familyClostridiales_Family_XI_Incertae_Sedis-0.0810.000490.000746
speciesBlautia_producta0.080.0005180.000786
speciesVeillonella_dispar0.080.0005280.000799
orderPseudomonadales-0.0790.00060.000905
speciesMegasphaera_elsdenii-0.0770.0007960.0012
genusRuminococcaceae_noname-0.0770.0008530.00127
speciesRuminococcaceae_bacterium_D16-0.0770.0008530.00127
speciesLactococcus_garvieae-0.0740.001320.00197
speciesLactobacillus_amylovorus-0.0720.001770.00263
speciesHoldemania_sp_AP20.0720.001860.00275
genusMorganella0.0720.001880.00276
speciesMorganella_morganii0.0720.001880.00276
speciesPeptostreptococcus_stomatis-0.0720.001910.0028
speciesAcidaminococcus_fermentans-0.070.002380.00348
speciesCollinsella_unclassified0.0690.002750.00401
genusPyramidobacter0.0690.002830.0041
speciesPyramidobacter_piscolens0.0690.002830.0041
speciesClostridium_spiroforme-0.0690.002940.00423
orderEnterobacteriales0.0690.002950.00423
familyEnterobacteriaceae0.0690.002950.00423
phylumSynergistetes0.0680.003180.00451
classSynergistia0.0680.003180.00451
orderSynergistales0.0680.003180.00451
familySynergistaceae0.0680.003180.00451
classGammaproteobacteria0.0680.00320.00452
speciesLactococcus_phage_phi7-0.0650.005070.00714
speciesVeillonella_parvula0.0640.005720.00804
genusSutterella-0.0640.005840.00818
speciesAlistipes_onderdonkii0.0630.006520.0091
speciesWeissella_cibaria-0.0620.007070.00984
speciesBacteroides_sp_3_1_190.0620.007520.0104
speciesFusobacterium_nucleatum0.0620.00770.0107
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0610.008080.0112
genusC2likevirus-0.060.009580.0132
speciesC2likevirus_unclassified-0.0590.0110.0151
genusVeillonella0.0580.01260.0172
genusCampylobacter0.0570.01430.0195
speciesLactobacillus_fermentum-0.0560.01520.0207
speciesBlautia_hydrogenotrophica-0.0560.0160.0217
speciesOdoribacter_unclassified-0.0550.01840.0249
speciesCampylobacter_concisus0.0540.01930.026
speciesMegamonas_hypermegale0.0540.01960.0264
speciesLactobacillus_reuteri-0.0530.0210.0282
speciesParabacteroides_sp_D13-0.0530.02160.0289
speciesKlebsiella_unclassified0.0530.02260.0301
familyCampylobacteraceae0.0520.02430.0323
speciesClostridium_sp_KLE_17550.0510.02610.0346
speciesLactobacillus_sanfranciscensis-0.0510.02880.0381
speciesProteus_mirabilis0.050.02980.0393
speciesErysipelotrichaceae_bacterium_3_1_530.050.03170.0417
speciesLactobacillus_acidophilus-0.0490.0330.0433
speciesBifidobacterium_breve-0.0490.03330.0435
classEpsilonproteobacteria0.0470.04220.0549
orderCampylobacterales0.0470.04220.0549
genusCoprobacter-0.0470.04320.0559
speciesCoprobacter_fastidiosus-0.0470.04320.0559
speciesVeillonella_atypica0.0470.04380.0565
speciesSlackia_piriformis-0.0470.04420.0568
speciesVeillonella_unclassified0.0460.04590.0589
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0460.04650.0595
familyViruses_noname-0.0460.04740.0603
genusViruses_noname-0.0460.04740.0603
genusPorphyromonas-0.0450.04950.0628
speciesKlebsiella_oxytoca-0.0450.05260.0666
genusSlackia-0.0440.05590.0705
speciesDialister_invisus-0.0440.05660.0712
speciesCollinsella_tanakaei0.0440.05760.0723
speciesOdoribacter_laneus-0.0440.05890.0737
speciesBacteroides_sp_1_1_60.0430.06020.0752
speciesBifidobacterium_pseudocatenulatum0.0430.06290.0783
genusStaphylococcus-0.0420.06760.084
speciesBacteroides_faecis0.0420.07050.0873
genusProteus0.0410.07980.0986
speciesAlistipes_shahii0.040.08510.105
speciesPorphyromonas_asaccharolytica-0.0390.09370.115
speciesHoldemania_filiformis-0.0380.1020.125
speciesLeuconostoc_lactis-0.0380.1040.127
speciesLactobacillus_vaginalis-0.0370.1060.129
genusWeissella-0.0370.1070.13
speciesAlistipes_finegoldii0.0370.1110.135
genusAggregatibacter0.0360.1160.14
speciesBacteroides_sp_4_3_47FAA0.0360.120.145
familySuccinivibrionaceae-0.0360.1220.147
genusAcidaminococcaceae_unclassified0.0350.1330.16
familyStaphylococcaceae-0.0340.1410.169
genusSuccinatimonas-0.0330.1480.176
speciesSuccinatimonas_hippei-0.0330.1480.176
genusLambdalikevirus-0.0330.1530.181
speciesWeissella_confusa-0.0330.1530.181
speciesBacteroides_fluxus0.0330.1560.184
speciesLactobacillus_mucosae-0.0330.1560.184
speciesPeptostreptococcus_anaerobius-0.0330.1580.186
speciesLactobacillus_oris-0.0320.1610.189
familyVeillonellaceae-0.0320.1620.189
genusMegasphaera0.0320.1620.189
genusSutterellaceae_unclassified0.0310.1760.205
genusAcidaminococcus-0.0310.1840.214
speciesStreptococcus_infantarius0.0290.2020.234
speciesAlistipes_indistinctus-0.0290.2090.242
genusCitrobacter0.0290.2110.243
genusPantoea0.0290.2120.243
speciesPantoea_unclassified0.0290.2120.243
speciesPrevotella_stercorea-0.0280.2190.251
speciesAggregatibacter_segnis0.0280.220.251
speciesEggerthella_lenta-0.0280.2340.267
speciesAlistipes_unclassified-0.0270.2380.271
speciesCitrobacter_unclassified0.0270.2440.277
genusPeptoniphilus0.0270.2460.278
speciesBacteroides_coprocola0.0270.2510.283
familyPodoviridae0.0260.2640.297
speciesLactobacillus_salivarius0.0250.2710.305
speciesCoriobacteriaceae_bacterium_phI0.0240.290.325
genusButyricicoccus0.0240.2940.328
speciesButyricicoccus_pullicaecorum0.0240.2940.328
genusCoriobacteriaceae_noname0.0240.2970.331
speciesAlistipes_sp_HGB50.0240.3060.34
speciesEnterobacteria_phage_HK5440.0240.3070.34
speciesLactococcus_phage_936_sensu_lato-0.0240.3080.34
speciesBacteroides_barnesiae-0.0230.3270.361
speciesCitrobacter_freundii0.0230.3290.362
speciesLactobacillus_crispatus-0.0220.3470.381
genusTunalikevirus-0.0210.3720.407
speciesDesulfovibrio_desulfuricans-0.0190.40.437
speciesMegamonas_funiformis0.0190.4030.439
speciesRoseburia_intestinalis-0.0190.4080.444
genusActinobacillus0.0190.4140.448
speciesActinobacillus_unclassified0.0190.4140.448
speciesEubacterium_limosum-0.0180.4270.461
speciesKlebsiella_sp_MS_92_30.0180.4420.475
speciesRoseburia_inulinivorans0.0180.4420.475
speciesAcidaminococcus_intestini0.0170.4570.49
speciesKlebsiella_phage_KP36-0.0170.4610.493
speciesHaemophilus_sputorum0.0170.4720.504
speciesEnterobacter_aerogenes0.0160.4790.51
speciesBacteroides_salanitronis-0.0160.490.521
orderAeromonadales-0.0160.50.53
speciesBacteroides_coprophilus-0.0150.5070.537
genusRoseburia0.0150.510.539
genusHoldemania0.0140.5420.571
speciesPorphyromonas_uenonis-0.0130.560.589
speciesEnterobacter_cloacae-0.0130.5640.592
speciesErysipelotrichaceae_bacterium_6_1_45-0.0130.5840.611
genusMyoviridae_noname-0.0120.6070.634
genusEnterobacter-0.0120.6180.644
speciesParabacteroides_sp_20_3-0.010.6630.689
speciesStreptococcus_lutetiensis0.010.6670.692
speciesHoldemania_unclassified-0.0090.6920.716
speciesClostridium_perfringens-0.0090.7030.726
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0090.7060.728
speciesStreptococcus_phage_Sfi210.0090.7130.733
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0080.7160.735
familyMyoviridae-0.0070.760.776
speciesAcidaminococcus_unclassified-0.0070.760.776
speciesMegasphaera_unclassified-0.0070.7710.786
speciesCoprobacillus_sp_D6-0.0060.8040.818
speciesCoprobacillus_sp_29_10.0060.8110.823
speciesHaemophilus_paraphrohaemolyticus0.0050.8290.838
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0050.830.838
speciesEscherichia_unclassified0.0050.8310.838
speciesLactococcus_phage_bIL67-0.0050.8410.846
speciesErysipelotrichaceae_bacterium_2_2_44A0.0040.8660.87
speciesAlistipes_sp_AP110.0010.9530.955
speciesBacteroides_eggerthii-0.0010.9810.981
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.2611283921820.1486931381150.00023984161313426438.78803
Ulcerative colitisSpain78660.1131486510510.1486931381150.0766447349041609420.1029
ObesityDenmark1691230.1297035082690.1184538276490.1871412179041055734.7144
Type II diabetesSweden53920.07597638285480.05755122530230.4195886125261353145.8212
Colorectal cancerAustria64350.04798745966550.03964200236120.453120299651634155.2883
Type II diabetesDenmark752770.1307945141110.1255407810580.5646337037592183671.577
Type II diabetesChina1831850.212824365520.2122177061070.9139236450862873894.9734
Liver cirrhosisChina1201140.2535501382950.251378526310.9213379504292864496.2209
Rheumatoid arthritisChina127980.139126938750.1428537388270.9497687227172878395.9849
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382