MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-03 22:27:44 PST
Job id & description: 1678, gna3
Query type: protein
Count queries & homologs: 89, 45
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
UniRef90_A0A173Z5Q614694Lack 5'-endK01205NOG86381FirmicutesBlautia100.099.1598.5
UniRef90_A0A174JQ6418048CompleteK12373COG0823;COG3525unknownunknown100.0100.097.95
UniRef90_A0A1C5XGZ019210CompleteK01197firmNOG16121FirmicutesBlautia99.8898.1499.76
UniRef90_A0A173YX8820138CompleteK12373COG0823;COG3525FirmicutesBlautia100.098.8299.88
UniRef90_A0A1C6FYP022622CompleteK01205NOG86381unknownunknown100.0100.098.34
UniRef90_A0A1C6FYP022092CompleteK01205NOG86381unknownunknown100.0100.097.19
UniRef90_A0A1C6FYP023167CompleteK01205NOG86381unknownunknown100.0100.096.56
UniRef90_A0A173YX8821998CompleteK12373COG0823;COG3525FirmicutesBlautia98.5100.092.27
UniRef90_A0A1C5MLX635135CompleteK12373NOG04067unknownunknown100.0100.097.97
UniRef90_B1BRJ736925CompleteK12373NOG12793FirmicutesClostridium100.099.9398.08
UniRef90_A0A1C6DLU532449Lack 5'-endK12373COG0823;COG3525unknownunknown100.099.1195.99
UniRef90_B1C4V141248CompleteK01197NOG69445Firmicutesunknown100.0100.0100.0
UniRef90_A0A1C6FYP029931Lack both endsK01205NOG86381unknownunknown83.7491.3194.0
UniRef90_A0A173YX8822383CompleteK12373COG0823;COG3525FirmicutesBlautia92.1594.6684.45
UniRef90_B1C36352189CompleteK01197NOG69445Firmicutesunknown100.0100.0100.0
UniRef90_B1C49653918CompleteK01197NOG69445Firmicutesunknown100.0100.0100.0
UniRef90_A0A1C5MLX651233Lack 3'-endK12373NOG04067unknownunknown89.68100.097.98
UniRef90_A0A1C5QJ0957833CompleteK01187COG1501Bacteroidetesunknown95.67100.099.84
UniRef90_A0A173YX8830648Lack 5'-endK12373COG0823;COG3525Firmicutesunknown86.196.8384.7
UniRef90_A0A1C5LNQ764124CompleteunknownCOG5492unknownunknown100.0100.099.92
UniRef90_A0A1C5QJ0950032CompleteK01187COG1501Bacteroidetesunknown100.0100.090.65
UniRef90_A0A1C5QJ0951796CompleteK01187COG1501Bacteroidetesunknown100.0100.089.95
UniRef90_A0A1C5QJ0951830CompleteK01187COG1501Bacteroidetesunknown100.0100.089.57
UniRef90_A0A1C5QJ0950135CompleteK01187COG1501BacteroidetesBacteroides100.0100.086.54
UniRef90_B1C4U983541CompleteK01197NOG69445Firmicutesunknown100.0100.0100.0
UniRef90_A0A1C5QJ0949997CompleteK01187COG1501BacteroidetesBacteroides100.0100.084.09
UniRef90_A0A1C5MLX665152Lack 5'-endK12373NOG04067unknownunknown83.92100.094.5
UniRef90_A0A1C5QJ0950007CompleteK01187COG1501BacteroidetesBacteroides100.0100.084.4
UniRef90_A0A1C5QJ0952069CompleteK01187COG1501Bacteroidetesunknown100.0100.080.91
UniRef90_A0A1C5QJ0952004CompleteK01187COG1501unknownunknown96.4497.4282.04
UniRef90_B1C4V190481Lack 3'-endK01197NOG69445Firmicutesunknown80.5699.7392.62
UniRef90_A0A1C5LNQ760891CompleteunknownCOG5492unknownunknown100.097.8787.4
UniRef90_A0A174K080572798CompleteK01197NOG69445unknownunknown100.099.599.83
UniRef90_R7EXG0597371CompleteK01197NOG69445unknownunknown100.0100.099.66
UniRef90_A0A174K080574720CompleteK01197NOG69445unknownunknown100.099.587.71
UniRef90_A0A414NWP91030689CompleteK01197NOG69445FirmicutesMitsuokella100.0100.096.68
UniRef90_A0A0P0ES571281202CompleteK01186NOG70940BacteroidetesBacteroides100.099.32100.0
UniRef90_A0A2M9V6U71279693Lack 5'-endK01114NOG70940BacteroidetesBacteroides100.099.198.64
UniRef90_A0A173Z3W81051464CompleteK01197NOG69445unknownunknown100.0100.094.56
UniRef90_A0A0P0ES571283509CompleteK01186NOG70940BacteroidetesBacteroides100.099.3295.45
UniRef90_A0A2M9V6U71302984CompleteK01190NOG70940BacteroidetesBacteroides100.0100.092.95
UniRef90_A0A0N7IF122829881CompleteunknownNOG84401unknownunknown100.0100.099.67
UniRef90_A0A0N7IF122834653CompleteunknownNOG84401unknownunknown100.0100.082.61
UniRef90_A0A0N7IF122841418CompleteunknownNOG84401unknownunknown100.0100.081.27
UniRef90_A0A0N7IF122835594CompleteunknownNOG84401unknownunknown100.0100.082.27
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.5551.78e-1514.2e-149
genusBacteroides0.5551.78e-1514.2e-149
speciesBacteroides_fragilis0.4285.3e-848.34e-82
speciesClostridium_bolteae0.4262.47e-832.91e-81
speciesBacteroides_thetaiotaomicron0.4221.1e-811.04e-79
speciesClostridium_symbiosum0.4085.55e-764.37e-74
speciesClostridiales_bacterium_1_7_47FAA0.4014.88e-733.29e-71
speciesRuminococcus_gnavus0.381.95e-651.15e-63
speciesClostridium_hathewayi0.3742.82e-631.48e-61
genusCoprococcus-0.3692.25e-611.06e-59
genusFlavonifractor0.3535.34e-562.1e-54
speciesFlavonifractor_plautii0.3535.34e-562.1e-54
genusParabacteroides0.3443.95e-531.43e-51
classBacteroidia0.3375.26e-511.57e-49
orderBacteroidales0.3375.26e-511.57e-49
phylumBacteroidetes0.3375.32e-511.57e-49
familyRuminococcaceae-0.3369.91e-512.75e-49
phylumFirmicutes-0.3283.84e-481.01e-46
speciesCoprococcus_catus-0.3183.52e-458.74e-44
genusCoprobacillus0.3139.68e-442.28e-42
speciesCoprococcus_comes-0.3099.86e-432.22e-41
familyClostridiales_noname0.3068.33e-421.79e-40
speciesBacteroides_ovatus0.3051.58e-413.24e-40
genusClostridiales_noname0.3042.95e-415.8e-40
speciesClostridium_citroniae0.3021.33e-402.51e-39
speciesDorea_longicatena-0.2996.87e-401.25e-38
speciesCoprobacillus_unclassified0.2981.56e-392.73e-38
classClostridia-0.2972.71e-394.41e-38
orderClostridiales-0.2972.71e-394.41e-38
familyClostridiaceae0.2861.22e-361.92e-35
speciesClostridium_asparagiforme0.2861.73e-362.63e-35
speciesClostridium_clostridioforme0.2852.3e-363.39e-35
genusClostridium0.2812.26e-353.23e-34
speciesBifidobacterium_adolescentis-0.286.38e-358.86e-34
speciesCollinsella_aerofaciens-0.2798.14e-351.1e-33
speciesAnaerostipes_unclassified0.2765.51e-347.22e-33
genusDorea-0.2723.58e-334.57e-32
speciesClostridium_ramosum0.2724.62e-335.74e-32
familyPorphyromonadaceae0.2716.91e-338.36e-32
familyPrevotellaceae-0.2683.07e-323.62e-31
speciesEggerthella_unclassified0.2611.53e-301.76e-29
genusCollinsella-0.2589.69e-301.09e-28
speciesMethanobrevibacter_smithii-0.2571.08e-291.19e-28
speciesEubacterium_biforme-0.2571.7e-291.82e-28
classMethanobacteria-0.2545.88e-295.91e-28
orderMethanobacteriales-0.2545.88e-295.91e-28
familyMethanobacteriaceae-0.2545.88e-295.91e-28
genusMethanobrevibacter-0.2547.66e-297.53e-28
genusEggerthella0.2538.27e-297.97e-28
speciesBacteroides_uniformis0.2512.63e-282.48e-27
speciesClostridium_nexile0.2498.31e-287.69e-27
phylumEuryarchaeota-0.2481.03e-279.35e-27
speciesSubdoligranulum_unclassified-0.2455.24e-274.67e-26
speciesLachnospiraceae_bacterium_1_4_56FAA0.2441.14e-269.96e-26
speciesAnaerotruncus_colihominis0.2422.94e-262.52e-25
genusButyrivibrio-0.2413.87e-263.26e-25
speciesLachnospiraceae_bacterium_8_1_57FAA-0.2414.17e-263.45e-25
speciesParaprevotella_unclassified-0.2398.7e-266.71e-25
phylumFusobacteria0.2398.74e-266.71e-25
classFusobacteriia0.2398.74e-266.71e-25
orderFusobacteriales0.2398.74e-266.71e-25
speciesFusobacterium_ulcerans0.2398.81e-266.71e-25
genusParaprevotella-0.2381.61e-251.21e-24
genusSubdoligranulum-0.2372.73e-252.01e-24
speciesRuminococcus_obeum-0.2373.32e-252.41e-24
familyFusobacteriaceae0.2363.63e-252.6e-24
speciesEubacterium_siraeum-0.2341.4e-249.86e-24
genusFusobacterium0.2314.37e-243.03e-23
genusFaecalibacterium-0.237.46e-245.03e-23
speciesFaecalibacterium_prausnitzii-0.237.46e-245.03e-23
speciesOlsenella_unclassified-0.2265.21e-233.46e-22
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2257.34e-234.81e-22
speciesFusobacterium_varium0.2213.88e-222.51e-21
familyEubacteriaceae-0.2214.31e-222.75e-21
genusEubacterium-0.2214.75e-222.99e-21
speciesBacteroides_caccae0.2199.72e-226.04e-21
phylumActinobacteria-0.2191.02e-216.17e-21
classActinobacteria-0.2191.02e-216.17e-21
speciesParaprevotella_clara-0.2164.09e-212.44e-20
speciesPrevotella_copri-0.2131.31e-207.73e-20
genusClostridiaceae_noname0.2131.46e-208.4e-20
speciesClostridiaceae_bacterium_JC1180.2131.46e-208.4e-20
genusOlsenella-0.2122.25e-201.28e-19
speciesAlistipes_senegalensis-0.2112.98e-201.67e-19
speciesEubacterium_hallii-0.214.89e-202.72e-19
speciesCoprococcus_sp_ART55_1-0.2081.11e-196.09e-19
speciesParaprevotella_xylaniphila-0.2081.22e-196.62e-19
speciesDorea_formicigenerans-0.2062.37e-191.27e-18
speciesEubacterium_ramulus-0.2054.18e-192.22e-18
speciesBacteroides_xylanisolvens0.2045.02e-192.63e-18
genusBifidobacterium-0.2021.01e-185.24e-18
speciesEubacterium_rectale-0.2021.11e-185.69e-18
orderBifidobacteriales-0.2012.06e-181.03e-17
familyBifidobacteriaceae-0.2012.06e-181.03e-17
speciesButyrivibrio_crossotus-0.22.63e-181.28e-17
orderCoriobacteriales-0.22.64e-181.28e-17
familyCoriobacteriaceae-0.22.64e-181.28e-17
genusRuminococcus-0.1993.41e-181.64e-17
speciesLachnospiraceae_bacterium_6_1_63FAA0.1985.46e-182.6e-17
speciesBlautia_producta0.1979.12e-184.3e-17
speciesRuminococcus_lactaris-0.1942.65e-171.24e-16
genusCatenibacterium-0.191.01e-164.63e-16
speciesCatenibacterium_mitsuokai-0.191.01e-164.63e-16
speciesLachnospiraceae_bacterium_2_1_58FAA0.1856.19e-162.81e-15
speciesLachnospiraceae_bacterium_5_1_57FAA0.1856.3e-162.83e-15
genusPhascolarctobacterium-0.1857.3e-163.22e-15
speciesPhascolarctobacterium_succinatutens-0.1857.3e-163.22e-15
speciesEubacterium_sp_3_1_310.1831.54e-156.73e-15
speciesParabacteroides_unclassified0.1831.59e-156.89e-15
genusPrevotella-0.1822e-158.58e-15
speciesBacteroides_vulgatus0.1795.7e-152.42e-14
speciesRoseburia_hominis-0.1761.68e-147.08e-14
speciesRuminococcus_callidus-0.1743.13e-141.31e-13
speciesAnaerostipes_hadrus-0.171.29e-135.34e-13
speciesErysipelotrichaceae_bacterium_6_1_450.1612.27e-129.32e-12
speciesEubacterium_dolichum0.1612.32e-129.44e-12
speciesErysipelotrichaceae_bacterium_2_2_44A0.163.69e-121.49e-11
speciesClostridium_sp_L2_50-0.163.94e-121.58e-11
speciesCoprococcus_eutactus-0.1594.13e-121.64e-11
speciesEubacterium_eligens-0.1594.38e-121.72e-11
familyOscillospiraceae0.1595.2e-122.01e-11
genusOscillibacter0.1595.2e-122.01e-11
speciesLactobacillus_ruminis-0.1585.54e-122.13e-11
speciesRuminococcus_bromii-0.1579.81e-123.71e-11
speciesMethanobrevibacter_unclassified-0.1579.82e-123.71e-11
speciesBacteroides_nordii0.1561.15e-114.31e-11
genusBilophila0.1551.66e-116.17e-11
genusBarnesiella-0.1551.82e-116.66e-11
speciesBarnesiella_intestinihominis-0.1551.82e-116.66e-11
genusBlautia0.1541.89e-116.86e-11
speciesBilophila_unclassified0.1542.34e-118.43e-11
speciesEscherichia_coli0.1532.72e-119.73e-11
speciesBilophila_wadsworthia0.1515.31e-111.88e-10
speciesPeptostreptococcaceae_noname_unclassified-0.156.23e-112.19e-10
speciesBifidobacterium_longum-0.1499.43e-113.3e-10
familyLachnospiraceae-0.1481.1e-103.82e-10
genusEscherichia0.1471.93e-106.65e-10
genusMethanosphaera-0.1462.1e-107.13e-10
speciesMethanosphaera_stadtmanae-0.1462.1e-107.13e-10
speciesDesulfovibrio_piger-0.1453.14e-101.06e-09
speciesOscillibacter_unclassified0.1427.1e-102.38e-09
genusMitsuokella-0.1419.44e-103.14e-09
speciesClostridium_sp_ATCC_BAA_4420.1419.67e-103.19e-09
speciesMitsuokella_unclassified-0.1391.63e-095.34e-09
speciesAnaerotruncus_unclassified-0.1382.04e-096.64e-09
speciesBacteroides_oleiciplenus0.1372.48e-098.02e-09
speciesBacteroides_pectinophilus-0.1372.81e-099.02e-09
phylumProteobacteria0.1363.55e-091.13e-08
genusAdlercreutzia-0.1363.93e-091.24e-08
speciesAdlercreutzia_equolifaciens-0.1363.93e-091.24e-08
familyAcidaminococcaceae-0.1345.43e-091.7e-08
genusPeptostreptococcaceae_noname-0.1345.81e-091.8e-08
speciesMitsuokella_multacida-0.1338.06e-092.49e-08
speciesErysipelotrichaceae_bacterium_3_1_530.1338.18e-092.51e-08
speciesBifidobacterium_bifidum-0.1338.84e-092.69e-08
speciesBacteroides_cellulosilyticus0.1321.06e-083.21e-08
speciesMegasphaera_micronuciformis0.131.5e-084.51e-08
familyBacteroidales_noname-0.1283.02e-088.91e-08
genusBacteroidales_noname-0.1283.02e-088.91e-08
speciesBacteroidales_bacterium_ph8-0.1283.02e-088.91e-08
speciesFusobacterium_nucleatum0.1273.31e-089.7e-08
genusTuricibacter-0.1273.64e-081.06e-07
speciesTuricibacter_sanguinis-0.1256.16e-081.78e-07
speciesEggerthella_lenta0.1256.44e-081.85e-07
speciesPrevotella_buccae0.1247.16e-082.05e-07
orderEnterobacteriales0.1231.05e-072.97e-07
familyEnterobacteriaceae0.1231.05e-072.97e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1221.19e-073.34e-07
speciesDialister_succinatiphilus-0.1221.21e-073.38e-07
speciesFusobacterium_mortiferum0.1221.28e-073.55e-07
speciesParabacteroides_distasonis0.1211.48e-074.09e-07
speciesRuminococcus_champanellensis-0.1211.59e-074.36e-07
speciesBifidobacterium_catenulatum-0.121.86e-075.07e-07
familyPeptostreptococcaceae-0.1192.34e-076.35e-07
speciesHoldemania_sp_AP20.1192.62e-077.07e-07
speciesTuricibacter_unclassified-0.1182.79e-077.48e-07
speciesBacteroides_plebeius-0.1174.03e-071.07e-06
speciesSubdoligranulum_sp_4_3_54A2FAA0.1164.84e-071.28e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1165.03e-071.33e-06
classDeltaproteobacteria0.1165.29e-071.37e-06
orderDesulfovibrionales0.1165.29e-071.37e-06
familyDesulfovibrionaceae0.1165.29e-071.37e-06
phylumVerrucomicrobia-0.1148.14e-072.04e-06
classVerrucomicrobiae-0.1148.14e-072.04e-06
orderVerrucomicrobiales-0.1148.14e-072.04e-06
familyVerrucomicrobiaceae-0.1148.14e-072.04e-06
genusAkkermansia-0.1148.14e-072.04e-06
speciesAkkermansia_muciniphila-0.1148.14e-072.04e-06
speciesEubacterium_ventriosum-0.1121.28e-063.2e-06
genusHoldemania0.112.05e-065.09e-06
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1092.14e-065.29e-06
genusLactobacillus-0.1082.83e-066.95e-06
speciesSutterella_wadsworthensis-0.1082.84e-066.95e-06
familyLactobacillaceae-0.1073.44e-068.37e-06
genusOxalobacter-0.1073.79e-069.13e-06
speciesOxalobacter_formigenes-0.1073.79e-069.13e-06
speciesButyrivibrio_unclassified-0.1064.51e-061.08e-05
speciesOscillibacter_sp_KLE_17450.1064.82e-061.15e-05
familyOxalobacteraceae-0.1054.87e-061.16e-05
genusMorganella0.1046.23e-061.46e-05
speciesMorganella_morganii0.1046.23e-061.46e-05
speciesBacteroides_dorei0.1038.88e-062.07e-05
speciesPrevotella_bivia0.1038.9e-062.07e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1011.15e-052.66e-05
speciesRoseburia_inulinivorans-0.0982.28e-055.25e-05
genusRoseburia-0.0972.5e-055.73e-05
classGammaproteobacteria0.0972.64e-056.02e-05
familyRikenellaceae0.0963.02e-056.82e-05
genusAlistipes0.0963.02e-056.82e-05
genusDesulfovibrio-0.0953.53e-057.93e-05
genusSutterella-0.0944.34e-059.71e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0944.77e-050.000106
speciesOscillibacter_sp_KLE_17280.0945.06e-050.000112
genusCoprobacter-0.0945.08e-050.000112
speciesCoprobacter_fastidiosus-0.0945.08e-050.000112
speciesEubacterium_cylindroides-0.0935.85e-050.000128
speciesClostridium_sp_KLE_17550.0918.2e-050.000178
speciesStreptococcus_thermophilus-0.099.23e-050.0002
speciesEubacterium_limosum0.090.0001040.000224
genusErysipelotrichaceae_noname-0.0890.0001130.000242
orderLactobacillales-0.0890.0001150.000246
speciesRoseburia_intestinalis-0.0890.0001270.00027
classBacilli-0.0880.0001310.000277
speciesBacteroides_coprocola-0.0870.0001730.000365
speciesMegasphaera_elsdenii-0.0860.0001930.000405
classNegativicutes-0.0860.0002060.000428
orderSelenomonadales-0.0860.0002060.000428
speciesPrevotella_stercorea-0.0850.0002380.000493
speciesBacteroides_coprophilus-0.0840.0002670.00055
genusPeptoniphilus0.0810.0004360.000895
orderActinomycetales-0.0810.0004670.000954
speciesClostridium_bartlettii-0.080.0005710.00116
speciesAlistipes_onderdonkii0.0790.0006010.00122
speciesBifidobacterium_animalis-0.0790.0006460.0013
speciesBacteroides_stercoris0.0780.0007480.0015
speciesRuminococcus_torques0.0780.0007550.00151
speciesClostridium_spiroforme0.0770.0008040.0016
speciesLactobacillus_rhamnosus-0.0760.0009480.00188
speciesVeillonella_dispar0.0750.001150.00227
genusPantoea0.0750.001220.00239
speciesPantoea_unclassified0.0750.001220.00239
speciesBacteroides_sp_2_1_220.0740.00130.00254
speciesStreptococcus_pasteurianus0.0740.001320.00256
speciesDorea_unclassified0.0740.001350.00261
genusCampylobacter0.0730.001630.00314
speciesPropionibacterium_freudenreichii-0.0730.001710.00328
speciesBacteroides_eggerthii-0.0720.001720.00329
speciesRuminococcus_sp_JC304-0.0720.001880.00358
genusActinomyces-0.0710.002180.00413
familyActinomycetaceae-0.070.002410.00455
speciesCoprobacillus_sp_29_10.070.002440.00459
speciesBacteroides_salanitronis-0.070.002570.00481
speciesCollinsella_intestinalis0.070.002630.00491
classErysipelotrichia-0.0690.002750.00507
orderErysipelotrichales-0.0690.002750.00507
familyErysipelotrichaceae-0.0690.002750.00507
familyCampylobacteraceae0.0690.002890.00531
speciesKlebsiella_pneumoniae0.0690.0030.00549
genusPseudoflavonifractor-0.0670.003520.00639
speciesPseudoflavonifractor_capillosus-0.0670.003520.00639
speciesStreptococcus_salivarius-0.0670.003570.00644
genusButyricicoccus0.0670.003590.00644
speciesButyricicoccus_pullicaecorum0.0670.003590.00644
speciesBifidobacterium_angulatum-0.0670.003670.00656
familyBurkholderiales_noname0.0670.003750.00668
genusBurkholderiales_noname0.0670.003850.00681
speciesBurkholderiales_bacterium_1_1_470.0670.003850.00681
speciesLactobacillus_salivarius0.0660.004280.00753
speciesMegamonas_funiformis-0.0660.004290.00753
familySuccinivibrionaceae-0.0640.005760.0101
familyMicrococcaceae-0.0630.00680.0118
genusRothia-0.0620.007210.0125
genusKlebsiella0.0620.00760.0131
genusSuccinatimonas-0.0620.007810.0134
speciesSuccinatimonas_hippei-0.0620.007810.0134
orderViruses_noname-0.0610.008090.0138
classEpsilonproteobacteria0.0610.008850.015
orderCampylobacterales0.0610.008850.015
speciesStreptococcus_infantarius0.060.009050.0153
speciesBlautia_hydrogenotrophica0.0580.0120.0202
speciesParabacteroides_goldsteinii0.0580.01220.0205
speciesBacteroides_sp_1_1_60.0580.01250.0209
speciesLactobacillus_sanfranciscensis-0.0580.01280.0213
speciesRothia_mucilaginosa-0.0570.01290.0214
speciesParabacteroides_sp_D13-0.0570.01420.0235
speciesCoprobacillus_sp_D60.0560.01460.0241
speciesKlebsiella_unclassified0.0560.01610.0265
familyStreptococcaceae-0.0550.01710.028
speciesProteus_mirabilis0.0550.01820.0297
speciesCollinsella_unclassified0.0530.02080.0339
genusCitrobacter0.0530.02130.0345
genusStreptococcus-0.0530.02180.0352
speciesLactobacillus_casei_paracasei-0.0530.02310.0372
speciesCitrobacter_unclassified0.0520.02360.0379
speciesBacteroides_barnesiae-0.0520.02450.0392
genusAnaerostipes-0.0520.02470.0394
speciesSlackia_piriformis-0.0520.02480.0394
speciesSutterella_parvirubra0.0520.02560.0405
speciesStreptococcus_parasanguinis-0.0510.02630.0415
speciesCitrobacter_freundii0.0510.02790.0439
speciesBacteroides_intestinalis0.0510.02820.0442
genusParasutterella0.0510.02870.0447
speciesParasutterella_excrementihominis0.0510.02870.0447
speciesLachnospiraceae_bacterium_7_1_58FAA0.0490.0350.0543
phylumViruses_noname-0.0490.03580.0552
classViruses_noname-0.0490.03580.0552
speciesLactococcus_phage_P680-0.0480.03720.0572
speciesLactobacillus_delbrueckii-0.0480.03770.0578
phylumSynergistetes0.0480.03870.0585
classSynergistia0.0480.03870.0585
orderSynergistales0.0480.03870.0585
familySynergistaceae0.0480.03870.0585
speciesBacteroides_salyersiae0.0480.03980.06
genusLachnospiraceae_noname0.0470.04050.0608
speciesCampylobacter_concisus0.0470.04060.0608
orderBacillales-0.0470.04090.0611
genusProteus0.0470.04240.0631
genusButyricimonas0.0460.04570.0676
speciesButyricimonas_synergistica0.0460.04570.0676
speciesBacteroides_fluxus-0.0460.04590.0677
familyPodoviridae0.0460.04680.0688
speciesPeptostreptococcus_anaerobius0.0450.05090.0744
speciesVeillonella_parvula0.0450.05090.0744
speciesStreptococcus_lutetiensis0.0450.0540.0787
speciesAlistipes_shahii-0.0440.05520.0801
genusPropionibacterium-0.0440.05530.0801
speciesKlebsiella_sp_MS_92_30.0440.05810.0839
speciesBacteroides_massiliensis-0.0430.06530.094
genusHaemophilus-0.0420.06640.0953
speciesHaemophilus_parainfluenzae-0.0420.06920.099
speciesStreptococcus_sanguinis-0.0420.0710.101
speciesOdoribacter_splanchnicus0.0410.0740.105
orderPasteurellales-0.0410.07810.11
familyPasteurellaceae-0.0410.07810.11
genusPyramidobacter0.040.08130.114
speciesPyramidobacter_piscolens0.040.08130.114
genusC2likevirus-0.040.08140.114
familyBacillales_noname-0.040.08730.122
genusGemella-0.040.08730.122
speciesClostridium_leptum-0.0390.08850.123
speciesC2likevirus_unclassified-0.0390.08950.124
speciesLactococcus_phage_phi7-0.0390.09210.127
speciesLactococcus_phage_jm2-0.0390.09330.128
speciesAggregatibacter_segnis0.0390.09590.132
speciesParabacteroides_johnsonii0.0380.09940.136
speciesAcidaminococcus_fermentans-0.0380.1010.138
speciesLactococcus_phage_936_sensu_lato-0.0380.1020.139
speciesDialister_invisus0.0380.1030.14
genusLactococcus-0.0370.1080.146
speciesStreptococcus_australis-0.0360.1160.156
genusAggregatibacter0.0360.1180.158
speciesRoseburia_unclassified-0.0360.1180.158
genusRuminococcaceae_noname-0.0360.1210.161
speciesRuminococcaceae_bacterium_D16-0.0360.1210.161
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0350.1270.169
genusMegasphaera0.0350.1310.174
classBetaproteobacteria0.0340.1360.18
orderBurkholderiales0.0340.1470.194
speciesVeillonella_atypica0.0330.1480.195
speciesStreptococcus_gordonii-0.0330.150.197
genusLeuconostoc-0.0330.1510.197
orderAeromonadales-0.0330.1540.201
speciesHoldemania_filiformis0.0330.1560.203
genusOdoribacter0.0330.1570.204
speciesMegamonas_rupellensis0.0320.1630.211
speciesErysipelotrichaceae_bacterium_21_30.0320.1710.22
speciesAlistipes_sp_AP110.0320.1710.22
genusPorphyromonas0.0310.1740.223
genusSutterellaceae_unclassified-0.0310.1750.224
orderPseudomonadales-0.030.1880.239
speciesBifidobacterium_breve-0.030.1880.239
genusSlackia-0.030.1910.242
speciesEscherichia_unclassified0.030.1940.245
familySiphoviridae-0.030.1980.249
speciesPorphyromonas_uenonis0.030.1980.249
speciesLactobacillus_oris0.0290.2080.261
familyPropionibacteriaceae-0.0290.2120.265
familyClostridiales_Family_XI_Incertae_Sedis0.0290.2180.272
speciesBacteroides_finegoldii-0.0280.2190.273
familyVeillonellaceae-0.0280.2250.279
speciesHoldemania_unclassified0.0280.2340.29
speciesOdoribacter_unclassified-0.0270.2390.295
speciesMegasphaera_unclassified-0.0260.2650.327
genusPeptostreptococcus0.0260.2690.331
speciesEnterobacter_cloacae-0.0250.2740.336
genusActinobacillus-0.0250.2810.342
speciesActinobacillus_unclassified-0.0250.2810.342
speciesLactobacillus_vaginalis0.0250.2810.342
speciesEnterobacteria_phage_HK5440.0250.2880.349
speciesPorphyromonas_asaccharolytica0.0240.2910.352
speciesParabacteroides_sp_20_3-0.0240.2920.352
familyLeuconostocaceae-0.0240.2950.355
genusMyoviridae_noname0.0240.2970.357
speciesLactococcus_lactis-0.0240.2980.357
genusMegamonas0.0240.2990.357
speciesAlistipes_indistinctus-0.0240.3060.365
speciesMegamonas_unclassified0.0240.3070.365
speciesAcidaminococcus_intestini0.0240.3090.366
speciesLactobacillus_gasseri-0.0230.310.367
speciesBifidobacterium_dentium-0.0230.3180.375
genusSiphoviridae_noname-0.0220.3450.406
genusVeillonella0.0220.3480.408
genusGordonibacter-0.0220.3490.408
speciesGordonibacter_pamelaeae-0.0220.3490.408
familyMyoviridae0.0210.3680.429
speciesBacteroides_sp_4_3_47FAA0.0210.370.43
speciesCoriobacteriaceae_bacterium_phI0.020.3790.44
speciesStreptococcus_anginosus0.020.3820.442
speciesBacteroides_clarus0.020.3870.447
genusEnterobacter-0.020.3890.448
speciesOdoribacter_laneus-0.020.3970.456
speciesBifidobacterium_pseudocatenulatum0.0180.4340.497
speciesAlistipes_sp_HGB50.0180.4410.504
speciesStreptococcus_phage_Sfi210.0180.4440.506
speciesDesulfovibrio_desulfuricans-0.0180.4480.509
genusCoriobacteriaceae_noname0.0180.4490.509
speciesStreptococcus_vestibularis-0.0170.4620.523
speciesLactobacillus_reuteri-0.0170.4630.523
speciesLactococcus_garvieae-0.0170.4740.534
speciesEnterococcus_faecium-0.0160.4810.541
speciesPeptostreptococcus_stomatis0.0160.4830.542
genusDialister-0.0160.490.548
orderCaudovirales-0.0160.4980.556
speciesAlistipes_unclassified-0.0140.5360.597
speciesStreptococcus_mitis_oralis_pneumoniae0.0140.5560.617
genusStaphylococcus-0.0120.5890.652
genusEnterococcus0.0120.590.652
speciesBacteroides_faecis0.0120.5940.655
speciesHaemophilus_paraphrohaemolyticus-0.0120.5980.658
speciesEnterobacter_aerogenes0.0120.6160.676
genusTunalikevirus0.0110.6280.688
familyEnterococcaceae0.0110.6410.7
speciesEnterococcus_faecalis-0.0110.6440.702
speciesLactobacillus_plantarum-0.010.6530.71
genusParvimonas-0.010.6550.711
speciesParvimonas_unclassified-0.010.6570.711
speciesHaemophilus_sputorum-0.010.6650.718
genusAnaerotruncus-0.010.6690.721
familySutterellaceae0.010.6740.724
genusAcidaminococcus-0.010.6750.724
speciesAlistipes_putredinis0.0090.6910.74
speciesLeuconostoc_lactis0.0090.7010.749
speciesLactococcus_phage_bIL67-0.0080.7190.766
speciesLachnospiraceae_bacterium_1_1_57FAA0.0080.7250.771
speciesMegamonas_hypermegale-0.0080.7280.772
speciesCollinsella_tanakaei0.0070.7580.802
speciesWeissella_confusa-0.0070.7790.823
speciesLactobacillus_acidophilus0.0060.7850.826
genusLambdalikevirus-0.0060.7860.826
speciesBacteroides_sp_3_1_19-0.0060.790.829
speciesKlebsiella_phage_KP360.0060.8080.846
speciesWeissella_cibaria-0.0050.8150.851
speciesAcidaminococcus_unclassified-0.0050.8210.855
speciesAlistipes_finegoldii-0.0050.8370.87
familyViruses_noname-0.0050.8420.87
genusViruses_noname-0.0050.8420.87
speciesLactobacillus_crispatus-0.0050.8420.87
genusSolobacterium-0.0040.8650.889
speciesSolobacterium_moorei-0.0040.8650.889
speciesClostridium_perfringens-0.0040.8750.898
speciesStreptococcus_mutans0.0030.8930.914
speciesGemella_morbillorum0.0020.9210.941
speciesLactobacillus_fermentum-0.0020.9330.951
speciesLactobacillus_amylovorus0.0020.9420.956
speciesVeillonella_unclassified0.0020.9430.956
speciesParabacteroides_merdae0.0020.9450.956
familyStaphylococcaceae-0.0020.9460.956
speciesEggerthella_sp_1_3_56FAA0.0010.9550.963
speciesLactobacillus_mucosae-0.0010.9610.967
genusAcidaminococcaceae_unclassified0.0010.9730.977
genusWeissella0.0010.9760.978
speciesKlebsiella_oxytoca0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.07979644557740.03763600429371.3823035672e-0721657.27267
Type II diabetesChina1831850.07006105097420.05882389053560.0046746584544828079.27658
ObesityDenmark1691230.03384472589850.02284558846120.012928124478726578.73697
Type II diabetesDenmark752770.03729557679250.02941290949550.0354711496344635020.8149
Ulcerative colitisSpain78660.02905815490440.03962196233370.0609592408759529317.4606
Colorectal cancerAustria64350.0218627163760.01504717019290.119864939178575819.4817
Crohns diseaseSpain17660.0476138491840.03962196233370.1703814759871611653.586
Type II diabetesSweden53920.03202033045080.02988722748420.6389643398911990367.3993
Rheumatoid arthritisChina127980.03625138542320.03516470406170.6652192378592150571.7144
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382