MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-11 00:19:08 PST
Job id & description: 1683, 6I-cond-98
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 98%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
6I-Cond1081831CompleteunknownCOG1020FirmicutesEubacterium100.099.7999.58
6I-Cond1127317CompleteunknownCOG1020FirmicutesEubacterium100.099.7898.51
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEubacterium_rectale0.8740.00.0
genusEubacterium0.6627.31e-2361.39e-233
familyEubacteriaceae0.6628.84e-2361.39e-233
classClostridia0.3671.01e-609.53e-59
orderClostridiales0.3671.01e-609.53e-59
genusCoprococcus0.3245.84e-474.59e-45
speciesDorea_longicatena0.3191.5e-451.01e-43
speciesCoprococcus_catus0.2995.49e-403.24e-38
speciesCoprococcus_comes0.2981.19e-396.24e-38
phylumFirmicutes0.291.25e-375.9e-36
speciesEubacterium_ramulus0.2884.35e-371.87e-35
genusDorea0.2853.23e-361.27e-34
speciesDorea_formicigenerans0.2751.08e-333.92e-32
speciesRuminococcus_sp_5_1_39BFAA0.2717.03e-332.37e-31
familyFusobacteriaceae-0.2652.41e-317.58e-30
phylumFusobacteria-0.2636.17e-311.62e-29
classFusobacteriia-0.2636.17e-311.62e-29
orderFusobacteriales-0.2636.17e-311.62e-29
speciesClostridium_bolteae-0.2621.27e-303.15e-29
speciesClostridium_ramosum-0.2611.96e-304.63e-29
genusFusobacterium-0.262.83e-306.36e-29
genusRuminococcus0.2593.9e-308.37e-29
speciesCoprobacillus_unclassified-0.2571.2e-292.46e-28
genusCoprobacillus-0.2521.52e-282.99e-27
familyRuminococcaceae0.2521.7e-283.21e-27
speciesRuminococcus_gnavus-0.2512.69e-284.88e-27
speciesClostridiales_bacterium_1_7_47FAA-0.2481.4e-272.45e-26
speciesRuminococcus_obeum0.2455.78e-279.74e-26
speciesEubacterium_hallii0.2414.03e-266.56e-25
speciesEubacterium_ventriosum0.2373.37e-255.3e-24
genusAdlercreutzia0.2314e-245.9e-23
speciesAdlercreutzia_equolifaciens0.2314e-245.9e-23
speciesCollinsella_aerofaciens0.2281.72e-232.46e-22
speciesAnaerostipes_unclassified-0.2272.97e-234.12e-22
speciesClostridium_symbiosum-0.2222.17e-222.93e-21
speciesClostridium_hathewayi-0.2181.35e-211.77e-20
genusClostridiales_noname-0.2171.92e-212.45e-20
speciesFusobacterium_ulcerans-0.2163.67e-214.56e-20
familyClostridiaceae-0.214.39e-205.31e-19
speciesRoseburia_hominis0.2096.41e-207.56e-19
speciesRuminococcus_bromii0.2081.16e-191.34e-18
genusCollinsella0.2081.2e-191.35e-18
speciesSubdoligranulum_unclassified0.2062.19e-192.4e-18
speciesFusobacterium_varium-0.2062.39e-192.56e-18
genusClostridium-0.2053.07e-193.22e-18
speciesBifidobacterium_adolescentis0.2044.78e-194.9e-18
speciesClostridium_nexile-0.2037.44e-197.47e-18
phylumBacteroidetes-0.22.71e-182.6e-17
classBacteroidia-0.22.75e-182.6e-17
orderBacteroidales-0.22.75e-182.6e-17
genusSubdoligranulum0.1985.22e-184.83e-17
phylumProteobacteria-0.1985.53e-185.02e-17
genusFaecalibacterium0.1978.26e-187.22e-17
speciesFaecalibacterium_prausnitzii0.1978.26e-187.22e-17
speciesAnaerostipes_hadrus0.1951.77e-171.52e-16
speciesRoseburia_inulinivorans0.1942.6e-172.19e-16
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1942.93e-172.43e-16
speciesEubacterium_siraeum0.1934.31e-173.51e-16
genusEscherichia-0.1916.86e-175.49e-16
speciesClostridium_clostridioforme-0.191.27e-169.99e-16
orderEnterobacteriales-0.1891.88e-161.43e-15
familyEnterobacteriaceae-0.1891.88e-161.43e-15
speciesEscherichia_coli-0.1873.15e-162.36e-15
classGammaproteobacteria-0.1841.22e-159e-15
speciesDorea_unclassified-0.1787.77e-155.64e-14
speciesPrevotella_buccae-0.1718.29e-145.93e-13
speciesLachnospiraceae_bacterium_3_1_46FAA0.1719.15e-146.45e-13
speciesRoseburia_intestinalis0.1691.64e-131.14e-12
speciesCoprococcus_sp_ART55_10.1692.07e-131.42e-12
orderCoriobacteriales0.1682.82e-131.87e-12
familyCoriobacteriaceae0.1682.82e-131.87e-12
genusBarnesiella0.1673.1e-132e-12
speciesBarnesiella_intestinihominis0.1673.1e-132e-12
speciesMegasphaera_micronuciformis-0.1648.25e-135.26e-12
speciesClostridium_leptum0.1631.17e-127.36e-12
familyBacteroidales_noname0.1621.75e-121.06e-11
genusBacteroidales_noname0.1621.75e-121.06e-11
speciesBacteroidales_bacterium_ph80.1621.75e-121.06e-11
speciesRuminococcus_lactaris0.1594.83e-122.89e-11
familyBacteroidaceae-0.1595.32e-123.1e-11
genusBacteroides-0.1595.32e-123.1e-11
speciesRuminococcus_callidus0.1595.4e-123.11e-11
genusPrevotella-0.1561.28e-117.28e-11
speciesLachnospiraceae_bacterium_5_1_63FAA0.1532.79e-111.57e-10
speciesKlebsiella_pneumoniae-0.1523.82e-112.12e-10
familyLachnospiraceae0.157.08e-113.89e-10
familyClostridiales_noname-0.1434.73e-102.57e-09
speciesBacteroides_fragilis-0.1435.13e-102.75e-09
genusRoseburia0.1426.09e-103.23e-09
speciesPrevotella_copri-0.1426.22e-103.26e-09
speciesLachnospiraceae_bacterium_5_1_57FAA-0.141.16e-096.02e-09
speciesBifidobacterium_longum0.141.28e-096.57e-09
genusMegasphaera-0.1381.95e-099.9e-09
genusKlebsiella-0.1382.28e-091.14e-08
speciesBacteroides_thetaiotaomicron-0.1372.63e-091.31e-08
genusGordonibacter0.1372.71e-091.32e-08
speciesGordonibacter_pamelaeae0.1372.71e-091.32e-08
speciesStreptococcus_thermophilus0.1355.14e-092.48e-08
speciesAlistipes_putredinis0.1346.63e-093.16e-08
genusFlavonifractor-0.1329.3e-094.35e-08
speciesFlavonifractor_plautii-0.1329.3e-094.35e-08
speciesFusobacterium_mortiferum-0.1329.53e-094.41e-08
genusTuricibacter0.1329.87e-094.52e-08
speciesEubacterium_eligens0.1311.16e-085.26e-08
genusButyrivibrio0.131.73e-087.78e-08
speciesRoseburia_unclassified-0.1292.29e-081.02e-07
speciesClostridium_citroniae-0.1292.37e-081.05e-07
speciesBlautia_producta-0.1282.55e-081.11e-07
speciesRuminococcus_torques0.1264.64e-082.01e-07
speciesClostridium_asparagiforme-0.1255.72e-082.45e-07
speciesAnaerotruncus_unclassified0.1256.43e-082.73e-07
speciesFusobacterium_nucleatum-0.1246.8e-082.87e-07
genusPseudoflavonifractor0.1246.93e-082.87e-07
speciesPseudoflavonifractor_capillosus0.1246.93e-082.87e-07
phylumActinobacteria0.1239.27e-083.77e-07
classActinobacteria0.1239.27e-083.77e-07
speciesTuricibacter_unclassified0.1239.91e-084e-07
speciesTuricibacter_sanguinis0.1231.04e-074.16e-07
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1231.05e-074.16e-07
genusCoprobacter0.1221.21e-074.72e-07
speciesCoprobacter_fastidiosus0.1221.21e-074.72e-07
speciesCoprococcus_eutactus0.1182.92e-071.13e-06
speciesButyrivibrio_unclassified0.1182.98e-071.14e-06
genusBifidobacterium0.1183.43e-071.31e-06
genusMitsuokella0.1173.81e-071.44e-06
genusMegamonas-0.1164.52e-071.69e-06
speciesBifidobacterium_catenulatum0.1164.74e-071.76e-06
speciesMegamonas_unclassified-0.1164.96e-071.83e-06
speciesParabacteroides_unclassified-0.1156.6e-072.41e-06
orderBifidobacteriales0.1147.61e-072.74e-06
familyBifidobacteriaceae0.1147.61e-072.74e-06
speciesMitsuokella_unclassified0.1131.03e-063.68e-06
speciesAlistipes_onderdonkii0.1121.11e-063.94e-06
genusPantoea-0.1121.29e-064.51e-06
speciesPantoea_unclassified-0.1121.29e-064.51e-06
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1111.6e-065.55e-06
phylumVerrucomicrobia0.1092.46e-068.18e-06
classVerrucomicrobiae0.1092.46e-068.18e-06
orderVerrucomicrobiales0.1092.46e-068.18e-06
familyVerrucomicrobiaceae0.1092.46e-068.18e-06
genusAkkermansia0.1092.46e-068.18e-06
speciesAkkermansia_muciniphila0.1092.46e-068.18e-06
genusParabacteroides-0.1082.91e-069.61e-06
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1073.21e-061.05e-05
familyRikenellaceae0.1073.59e-061.16e-05
genusAlistipes0.1073.59e-061.16e-05
genusDialister0.1064.68e-061.5e-05
speciesDialister_invisus0.1055.85e-061.87e-05
speciesLactobacillus_salivarius-0.1029.1e-062.88e-05
speciesStreptococcus_pasteurianus-0.11.42e-054.47e-05
genusMethanobrevibacter0.0991.84e-055.75e-05
classMethanobacteria0.0982.3e-057.05e-05
orderMethanobacteriales0.0982.3e-057.05e-05
familyMethanobacteriaceae0.0982.3e-057.05e-05
speciesLachnospiraceae_bacterium_8_1_57FAA0.0963.01e-059.17e-05
phylumEuryarchaeota0.0963.09e-059.35e-05
speciesMethanobrevibacter_smithii0.0954.24e-050.000127
speciesAlistipes_senegalensis0.0944.38e-050.000131
speciesPeptostreptococcaceae_noname_unclassified0.0944.48e-050.000133
genusOdoribacter0.0935.15e-050.000152
genusC2likevirus0.0935.42e-050.000158
orderCaudovirales0.0935.43e-050.000158
speciesBifidobacterium_bifidum0.0935.51e-050.00016
speciesBlautia_hydrogenotrophica0.0935.83e-050.000168
speciesC2likevirus_unclassified0.0936.08e-050.000174
speciesAlistipes_shahii0.0926.7e-050.000191
familySiphoviridae0.0926.99e-050.000198
speciesClostridium_sp_ATCC_BAA_442-0.0927.15e-050.000201
speciesAlistipes_sp_AP110.0917.42e-050.000207
speciesBacteroides_stercoris-0.0917.88e-050.000219
speciesOdoribacter_splanchnicus0.0890.000110.000304
speciesParabacteroides_goldsteinii-0.0890.0001140.000313
speciesEubacterium_limosum-0.0890.0001160.000316
speciesAlistipes_finegoldii0.0860.0001970.000534
speciesBacteroides_nordii-0.0850.0002420.000649
speciesHoldemania_filiformis0.0850.0002420.000649
phylumViruses_noname0.0840.0002770.000735
classViruses_noname0.0840.0002770.000735
genusRuminococcaceae_noname0.0840.0002830.000742
speciesRuminococcaceae_bacterium_D160.0840.0002830.000742
genusPeptostreptococcaceae_noname0.0830.0003070.000801
speciesCampylobacter_concisus-0.0830.0003440.000892
genusPeptostreptococcus-0.0820.0003760.00097
speciesStreptococcus_anginosus-0.0820.0003820.00098
speciesLactobacillus_fermentum-0.0820.0003990.00102
genusAnaerostipes0.0820.0004140.00105
speciesHaemophilus_paraphrohaemolyticus-0.0810.0004430.00112
classErysipelotrichia-0.080.0005380.00134
orderErysipelotrichales-0.080.0005380.00134
familyErysipelotrichaceae-0.080.0005380.00134
speciesLactococcus_lactis0.0790.0006080.0015
speciesLachnospiraceae_bacterium_7_1_58FAA0.0790.0006150.00151
speciesEggerthella_unclassified-0.0790.0006650.00163
speciesMethanobrevibacter_unclassified0.0780.0006920.00168
speciesPeptostreptococcus_stomatis-0.0780.0007270.00176
genusCampylobacter-0.0780.0007510.00181
speciesEubacterium_biforme0.0780.0007840.00188
speciesLactococcus_phage_P6800.0770.0009010.00215
speciesLachnospiraceae_bacterium_1_1_57FAA0.0760.0009750.00231
familyCampylobacteraceae-0.0760.001010.00238
speciesClostridium_sp_L2_500.0760.001020.00238
classEpsilonproteobacteria-0.0760.001030.00238
orderCampylobacterales-0.0760.001030.00238
genusSiphoviridae_noname0.0760.001030.00238
speciesMegamonas_hypermegale-0.0760.001050.00242
speciesErysipelotrichaceae_bacterium_3_1_53-0.0750.001150.00263
speciesLactobacillus_mucosae-0.0750.001250.00285
speciesVeillonella_dispar-0.0740.00140.00318
genusLactococcus0.0730.001510.00341
speciesPorphyromonas_asaccharolytica0.0730.001640.00369
genusEggerthella-0.0730.001690.00378
speciesPrevotella_stercorea-0.0720.00180.00401
familyPrevotellaceae-0.0710.002150.00476
speciesClostridium_bartlettii0.0710.00220.00485
speciesMegamonas_rupellensis-0.0710.002250.00494
speciesHoldemania_unclassified0.070.002470.0054
familyPropionibacteriaceae0.070.002630.00572
speciesEscherichia_unclassified-0.0690.003010.00652
speciesEnterobacter_cloacae-0.0660.004250.00916
speciesBacteroides_uniformis0.0650.005050.0108
speciesBifidobacterium_breve-0.0650.005150.011
speciesBacteroides_ovatus-0.0640.005850.0124
speciesEubacterium_cylindroides0.0640.005870.0124
genusHoldemania0.0630.006350.0134
speciesMegasphaera_unclassified-0.0630.006810.0143
genusVeillonella-0.0620.007250.0151
familyPeptostreptococcaceae0.0620.007320.0152
speciesVeillonella_parvula-0.0620.00750.0155
speciesClostridium_sp_KLE_1755-0.0620.007770.016
genusEnterobacter-0.0610.008060.0165
speciesBacteroides_xylanisolvens-0.0610.008370.0171
speciesVeillonella_unclassified-0.0610.008650.0176
speciesLactobacillus_crispatus-0.060.00920.0186
genusPorphyromonas0.060.009280.0187
speciesLactobacillus_sanfranciscensis0.0590.01010.0203
speciesDesulfovibrio_desulfuricans0.0590.01040.0208
speciesCitrobacter_freundii-0.0590.01080.0215
classNegativicutes-0.0590.01090.0215
orderSelenomonadales-0.0590.01090.0215
genusErysipelotrichaceae_noname-0.0590.01120.022
speciesSutterella_wadsworthensis0.0580.01250.0245
speciesPropionibacterium_freudenreichii0.0570.01340.0261
speciesLactobacillus_acidophilus0.0560.0150.0291
speciesOscillibacter_sp_KLE_17280.0560.01520.0294
speciesButyrivibrio_crossotus0.0560.01630.0314
speciesParaprevotella_unclassified0.0550.01710.0328
speciesBacteroides_salyersiae-0.0550.01810.0346
genusParaprevotella0.0540.01880.0358
speciesLeuconostoc_lactis0.0540.01960.0372
speciesBifidobacterium_animalis0.0540.02020.0381
genusPropionibacterium0.0540.02040.0384
genusLachnospiraceae_noname0.0530.02230.0418
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0530.02260.0422
genusButyricicoccus-0.0520.02430.045
speciesButyricicoccus_pullicaecorum-0.0520.02430.045
speciesParaprevotella_xylaniphila0.0510.02670.0492
speciesBifidobacterium_angulatum0.050.03050.056
familyClostridiales_Family_XI_Incertae_Sedis-0.050.03080.0563
speciesVeillonella_atypica-0.050.0310.0565
familyPorphyromonadaceae-0.050.03120.0566
speciesErysipelotrichaceae_bacterium_2_2_44A-0.050.03160.0571
speciesHoldemania_sp_AP2-0.0490.03290.0593
speciesStreptococcus_mitis_oralis_pneumoniae-0.0490.03390.0608
genusSutterella0.0490.03430.0613
familyVeillonellaceae-0.0490.03490.0622
speciesLactobacillus_rhamnosus0.0480.03880.0688
speciesEnterobacteria_phage_HK544-0.0470.04020.0711
speciesEubacterium_sp_3_1_31-0.0470.0420.0739
familyViruses_noname-0.0470.04230.0739
genusViruses_noname-0.0470.04230.0739
classDeltaproteobacteria-0.0470.04380.0756
orderDesulfovibrionales-0.0470.04380.0756
familyDesulfovibrionaceae-0.0470.04380.0756
speciesCitrobacter_unclassified-0.0470.04390.0756
speciesAnaerotruncus_colihominis-0.0460.04620.0793
speciesEnterococcus_faecalis-0.0460.04740.0811
genusCitrobacter-0.0460.0490.0835
speciesStreptococcus_parasanguinis0.0450.05190.0881
genusLeuconostoc0.0450.05260.089
speciesClostridium_perfringens-0.0450.05290.0892
familyBacillales_noname-0.0440.05550.0929
genusGemella-0.0440.05550.0929
speciesLactobacillus_reuteri-0.0440.0570.0951
genusMorganella-0.0430.06090.101
speciesMorganella_morganii-0.0430.06090.101
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0430.06390.105
speciesOdoribacter_unclassified0.0430.06510.107
speciesSutterella_parvirubra-0.0430.06590.108
speciesLactobacillus_oris-0.0420.06960.114
speciesStreptococcus_infantarius-0.0410.07640.124
genusAggregatibacter-0.040.08410.136
speciesBacteroides_clarus-0.040.08630.139
speciesBacteroides_pectinophilus0.0390.09390.151
speciesLactobacillus_delbrueckii0.0380.09710.156
familyEnterococcaceae-0.0380.09760.156
speciesBilophila_unclassified-0.0380.09990.159
orderBacillales-0.0380.1030.164
genusActinobacillus-0.0380.1050.166
speciesActinobacillus_unclassified-0.0380.1050.166
genusBilophila-0.0370.1060.166
speciesBacteroides_oleiciplenus-0.0370.1060.166
speciesBacteroides_plebeius-0.0370.1060.166
speciesLactobacillus_amylovorus-0.0370.1080.168
genusMethanosphaera0.0370.1120.173
speciesMethanosphaera_stadtmanae0.0370.1120.173
genusClostridiaceae_noname-0.0370.1140.175
genusEnterococcus-0.0370.1140.175
speciesClostridiaceae_bacterium_JC118-0.0370.1140.175
speciesOscillibacter_unclassified0.0350.1250.191
speciesOdoribacter_laneus0.0350.1320.201
speciesAlistipes_sp_HGB50.0350.1350.205
orderAeromonadales-0.0340.1390.209
genusProteus-0.0340.1390.209
genusAnaerotruncus0.0340.1390.209
speciesBacteroides_intestinalis-0.0340.1410.211
familyMicrococcaceae-0.0330.1490.223
speciesRothia_mucilaginosa-0.0330.150.223
speciesLactococcus_phage_936_sensu_lato0.0330.150.223
genusRothia-0.0330.1540.228
speciesLactobacillus_casei_paracasei0.0330.1570.232
genusHaemophilus-0.0320.1610.235
speciesAggregatibacter_segnis-0.0320.1610.235
speciesHaemophilus_parainfluenzae-0.0320.1610.235
speciesParabacteroides_distasonis-0.0320.1640.239
speciesStreptococcus_lutetiensis-0.0320.1670.243
speciesEggerthella_lenta-0.0320.1680.243
familyBurkholderiales_noname0.0320.1690.244
orderPasteurellales-0.0310.1770.254
familyPasteurellaceae-0.0310.1770.254
genusBurkholderiales_noname0.0310.1820.26
speciesBurkholderiales_bacterium_1_1_470.0310.1820.26
speciesBacteroides_dorei-0.030.1880.267
speciesSlackia_piriformis0.030.1890.268
genusAcidaminococcus-0.030.1950.276
speciesAlistipes_indistinctus0.0290.2060.29
familySuccinivibrionaceae-0.0290.2120.297
genusSolobacterium-0.0290.2130.297
speciesSolobacterium_moorei-0.0290.2130.297
speciesParvimonas_unclassified-0.0290.2150.298
genusPhascolarctobacterium0.0290.2160.298
speciesPhascolarctobacterium_succinatutens0.0290.2160.298
genusParvimonas-0.0290.2170.298
speciesCollinsella_tanakaei-0.0290.2170.298
speciesBacteroides_finegoldii-0.0290.2170.298
speciesRuminococcus_sp_JC3040.0280.220.298
speciesMitsuokella_multacida0.0280.220.298
speciesMegamonas_funiformis-0.0280.220.298
speciesParaprevotella_clara0.0280.220.298
speciesStreptococcus_gordonii-0.0280.2240.303
speciesKlebsiella_unclassified-0.0280.2250.303
speciesAcidaminococcus_intestini-0.0280.2260.304
speciesLactobacillus_ruminis0.0280.230.308
speciesLactococcus_phage_phi70.0280.2310.309
speciesProteus_mirabilis-0.0270.2350.313
classBetaproteobacteria-0.0270.240.319
speciesRuminococcus_champanellensis0.0270.2420.321
speciesParabacteroides_merdae0.0270.2470.327
phylumSynergistetes-0.0270.2510.328
classSynergistia-0.0270.2510.328
orderSynergistales-0.0270.2510.328
familySynergistaceae-0.0270.2510.328
speciesEubacterium_dolichum-0.0260.260.339
speciesKlebsiella_sp_MS_92_3-0.0260.2690.35
speciesStreptococcus_salivarius0.0250.2730.354
speciesBacteroides_salanitronis0.0250.2840.367
genusPyramidobacter-0.0240.2930.376
speciesPyramidobacter_piscolens-0.0240.2930.376
speciesDialister_succinatiphilus0.0240.2930.376
familyStaphylococcaceae0.0240.2950.377
genusSuccinatimonas-0.0240.2980.379
speciesSuccinatimonas_hippei-0.0240.2980.379
speciesCoprobacillus_sp_29_1-0.0240.3060.388
speciesBacteroides_faecis-0.0230.310.392
familyOxalobacteraceae0.0230.3120.394
speciesBacteroides_sp_4_3_47FAA0.0230.3130.394
genusDesulfovibrio0.0230.3180.399
speciesBacteroides_barnesiae0.0230.3280.411
genusPeptoniphilus-0.0220.3420.427
genusStaphylococcus0.0220.3430.427
speciesLactobacillus_plantarum0.0220.3440.427
speciesPeptostreptococcus_anaerobius-0.0220.3510.435
genusLambdalikevirus-0.0210.3560.44
genusOxalobacter0.0210.3670.451
speciesOxalobacter_formigenes0.0210.3670.451
genusParasutterella0.020.3790.463
speciesParasutterella_excrementihominis0.020.3790.463
genusWeissella-0.020.3810.465
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.020.3880.472
orderBurkholderiales-0.020.3960.48
speciesWeissella_cibaria-0.0190.4020.487
speciesBacteroides_coprocola-0.0190.4080.492
speciesCoprobacillus_sp_D60.0190.4090.492
familyMyoviridae0.0190.4150.498
familyOscillospiraceae0.0190.4220.503
genusOscillibacter0.0190.4220.503
speciesParabacteroides_sp_D130.0190.4220.503
speciesGemella_morbillorum-0.0180.4280.509
genusButyricimonas-0.0180.4330.512
speciesButyricimonas_synergistica-0.0180.4330.512
speciesBacteroides_sp_3_1_19-0.0180.4350.513
speciesBilophila_wadsworthia-0.0180.4410.519
orderViruses_noname0.0170.4640.545
speciesPrevotella_bivia-0.0170.4650.545
speciesLactobacillus_vaginalis-0.0160.4960.579
speciesBacteroides_cellulosilyticus0.0150.510.594
speciesMegasphaera_elsdenii-0.0140.5350.622
speciesBacteroides_caccae0.0140.5460.633
familySutterellaceae-0.0140.5560.643
speciesOlsenella_unclassified0.0130.5670.654
speciesStreptococcus_sanguinis-0.0130.5680.654
speciesParabacteroides_sp_20_30.0130.5720.657
speciesBacteroides_coprophilus-0.0130.580.664
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0130.5880.672
speciesKlebsiella_phage_KP360.0120.5960.679
speciesAcidaminococcus_fermentans-0.0120.5980.68
speciesBifidobacterium_dentium-0.0120.6020.683
speciesBacteroides_massiliensis0.0120.6060.686
speciesStreptococcus_mutans-0.0120.6190.699
speciesDesulfovibrio_piger-0.0110.6410.722
genusAcidaminococcaceae_unclassified0.0110.6470.727
speciesStreptococcus_australis-0.010.6540.733
familyLactobacillaceae0.010.6660.743
familyAcidaminococcaceae0.010.6660.743
familyStreptococcaceae0.0090.6820.759
genusStreptococcus0.0090.6890.765
genusBlautia-0.0090.7010.777
orderActinomycetales-0.0090.7070.782
speciesLactococcus_phage_bIL670.0080.720.794
genusCatenibacterium0.0080.7330.805
speciesCatenibacterium_mitsuokai0.0080.7330.805
orderLactobacillales-0.0080.7420.81
speciesCollinsella_unclassified-0.0080.7420.81
classBacilli-0.0080.7430.81
speciesLactobacillus_gasseri-0.0070.7480.813
speciesCoriobacteriaceae_bacterium_phI-0.0070.7590.824
orderPseudomonadales-0.0070.7610.824
speciesHaemophilus_sputorum-0.0070.770.832
genusSutterellaceae_unclassified-0.0070.7720.832
genusLactobacillus0.0060.7820.841
speciesBacteroides_fluxus0.0060.7910.849
speciesBacteroides_sp_1_1_6-0.0060.8050.862
speciesBacteroides_sp_2_1_220.0060.8090.863
speciesWeissella_confusa-0.0060.8110.863
speciesStreptococcus_phage_Sfi210.0060.8120.863
speciesBifidobacterium_pseudocatenulatum-0.0050.8180.868
genusOlsenella-0.0050.8250.873
speciesEnterococcus_faecium0.0050.8270.873
speciesAlistipes_unclassified-0.0050.8330.878
speciesBacteroides_eggerthii-0.0050.8390.882
speciesLactococcus_phage_jm20.0040.8490.891
familyPodoviridae0.0040.860.898
speciesLactococcus_garvieae-0.0040.860.898
speciesAcidaminococcus_unclassified0.0040.8620.898
speciesParabacteroides_johnsonii-0.0040.8670.899
genusTunalikevirus0.0040.8680.899
genusActinomyces-0.0040.8690.899
speciesOscillibacter_sp_KLE_1745-0.0040.8720.901
speciesStreptococcus_vestibularis0.0040.8770.904
familyActinomycetaceae-0.0030.9140.94
speciesClostridium_spiroforme0.0020.9160.94
genusCoriobacteriaceae_noname-0.0020.9240.946
speciesErysipelotrichaceae_bacterium_6_1_450.0020.9280.948
genusSlackia0.0020.9310.949
speciesBacteroides_vulgatus0.0020.9330.949
speciesCollinsella_intestinalis0.0020.9410.955
speciesKlebsiella_oxytoca-0.0010.9490.961
speciesEggerthella_sp_1_3_56FAA0.0010.9560.966
speciesEnterobacter_aerogenes-0.0010.9580.966
speciesErysipelotrichaceae_bacterium_21_3-0.0010.970.975
genusMyoviridae_noname-0.0010.9710.975
familyLeuconostocaceae0.00.9960.998
speciesPorphyromonas_uenonis0.01.01.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.00661566477460.01011715306220.000106215385118518517.4174
Ulcerative colitisSpain78660.01168560962230.02138441163720.001922841540267902.60606
Type II diabetesChina1831850.008526956215680.01361823143370.00600958100079307910.1755
Crohns diseaseSpain17660.01082401860060.02138441163720.020381892761941531.3051
Colorectal cancerAustria64350.01796964198590.02774557721050.2830561972451154539.0614
Rheumatoid arthritisChina127980.02812267874310.02138394552220.4925656574941750958.3886
ObesityDenmark1691230.01808178434770.0159999764040.6723893865492331376.6598
Type II diabetesDenmark752770.01758550081970.01729237667990.8797247892252821092.4706
Type II diabetesSweden53920.04096798322240.03716595362410.9738309359572879797.5178
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382