MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-17 18:16:48 PST
Job id & description: 1687, HIF
Query type: protein
Count queries & homologs: 2, 3
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
UniRef90_A7B1V0972000Lack 5'-endK01593COG0076FirmicutesBlautia100.099.39100.0
UniRef90_A7B1V01051560CompleteK01593COG0076FirmicutesBlautia97.55100.092.26
UniRef90_A7B1V01047184CompleteK01593COG0076FirmicutesBlautia97.1499.3792.44
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.9330.00.0
speciesCoprobacillus_unclassified0.5563.83e-1529.04e-150
genusCoprobacillus0.5455.2e-1458.18e-143
speciesClostridium_ramosum0.5141.5e-1261.77e-124
speciesSubdoligranulum_unclassified-0.5032.85e-1202.69e-118
genusSubdoligranulum-0.4928.82e-1156.94e-113
speciesClostridium_bolteae0.4843.38e-1102.28e-108
speciesClostridium_nexile0.4673.74e-1022.21e-100
speciesLachnospiraceae_bacterium_9_1_43BFAA0.4654.08e-1012.14e-99
speciesLachnospiraceae_bacterium_2_1_58FAA0.4532.28e-951.08e-93
phylumFusobacteria0.4512.39e-948.68e-93
classFusobacteriia0.4512.39e-948.68e-93
orderFusobacteriales0.4512.39e-948.68e-93
familyFusobacteriaceae0.455.48e-941.85e-92
genusFusobacterium0.4451.91e-916.01e-90
speciesAlistipes_senegalensis-0.4065.57e-751.64e-73
genusCoprococcus-0.4037.01e-741.95e-72
speciesClostridium_symbiosum0.48.33e-732.18e-71
familyBacteroidales_noname-0.3986.21e-721.4e-70
genusBacteroidales_noname-0.3986.21e-721.4e-70
speciesBacteroidales_bacterium_ph8-0.3986.21e-721.4e-70
speciesEubacterium_siraeum-0.3971.2e-712.57e-70
speciesCoprococcus_catus-0.3962.11e-714.33e-70
speciesLachnospiraceae_bacterium_1_4_56FAA0.3933.26e-706.41e-69
speciesEggerthella_unclassified0.3891.2e-682.27e-67
genusEggerthella0.3861.12e-672.03e-66
speciesAnaerotruncus_unclassified-0.3855.24e-679.16e-66
speciesLachnospiraceae_bacterium_6_1_63FAA0.3832.55e-664.3e-65
genusBlautia0.3781.15e-641.87e-63
speciesRoseburia_hominis-0.371.13e-611.78e-60
speciesClostridium_clostridioforme0.3649.23e-601.41e-58
speciesClostridiales_bacterium_1_7_47FAA0.362.7e-583.98e-57
speciesAnaerostipes_unclassified0.3581.21e-571.73e-56
familyRuminococcaceae-0.3551.1e-561.53e-55
speciesBlautia_producta0.3473.33e-544.49e-53
genusButyrivibrio-0.3461.29e-531.69e-52
familyClostridiaceae0.3421.54e-521.96e-51
genusClostridium0.346.68e-528.3e-51
genusFlavonifractor0.3383.88e-514.58e-50
speciesFlavonifractor_plautii0.3383.88e-514.58e-50
speciesClostridium_hathewayi0.3361.62e-501.86e-49
speciesEscherichia_coli0.3292.02e-482.27e-47
genusEscherichia0.3275.58e-486.13e-47
orderEnterobacteriales0.3252.78e-472.92e-46
familyEnterobacteriaceae0.3252.78e-472.92e-46
familyRikenellaceae-0.3253.83e-473.85e-46
genusAlistipes-0.3253.83e-473.85e-46
speciesAlistipes_shahii-0.3244.96e-474.88e-46
speciesFusobacterium_ulcerans0.3231.13e-461.09e-45
genusOdoribacter-0.3184.22e-453.98e-44
speciesMethanobrevibacter_smithii-0.3174.9e-454.53e-44
classMethanobacteria-0.3169.76e-458.53e-44
orderMethanobacteriales-0.3169.76e-458.53e-44
familyMethanobacteriaceae-0.3169.76e-458.53e-44
classGammaproteobacteria0.3161.17e-441e-43
phylumEuryarchaeota-0.3152.74e-442.31e-43
genusMethanobrevibacter-0.3143.92e-443.25e-43
genusBarnesiella-0.3131.09e-438.72e-43
speciesBarnesiella_intestinihominis-0.3131.09e-438.72e-43
speciesCoprococcus_comes-0.3067.15e-425.62e-41
genusOxalobacter-0.3052.04e-411.55e-40
speciesOxalobacter_formigenes-0.3052.04e-411.55e-40
familyOxalobacteraceae-0.3011.72e-401.29e-39
speciesEubacterium_eligens-0.34.09e-403.02e-39
speciesOdoribacter_splanchnicus-0.2962.99e-392.17e-38
speciesEubacterium_rectale-0.2941.58e-381.13e-37
speciesAlistipes_putredinis-0.2917.55e-385.32e-37
familyEubacteriaceae-0.291.32e-379.16e-37
genusEubacterium-0.291.49e-371.02e-36
speciesEubacterium_ramulus-0.2886.39e-374.31e-36
speciesMitsuokella_unclassified-0.2877.39e-374.91e-36
speciesBifidobacterium_adolescentis-0.2879.26e-375.88e-36
phylumVerrucomicrobia-0.2879.72e-375.88e-36
classVerrucomicrobiae-0.2879.72e-375.88e-36
orderVerrucomicrobiales-0.2879.72e-375.88e-36
familyVerrucomicrobiaceae-0.2879.72e-375.88e-36
genusAkkermansia-0.2879.72e-375.88e-36
speciesAkkermansia_muciniphila-0.2879.72e-375.88e-36
genusAnaerotruncus-0.2837.87e-364.7e-35
speciesCoprococcus_sp_ART55_1-0.2838.21e-364.84e-35
genusMitsuokella-0.2831.07e-356.24e-35
speciesFusobacterium_varium0.2821.46e-358.4e-35
speciesFusobacterium_mortiferum0.2773.28e-341.87e-33
speciesLachnospiraceae_bacterium_5_1_57FAA0.2759.14e-345.14e-33
speciesDorea_longicatena-0.2683.58e-321.99e-31
speciesBacteroides_fragilis0.2677.56e-324.15e-31
speciesAlistipes_finegoldii-0.2621.26e-306.84e-30
familyBacteroidaceae0.2594.89e-302.59e-29
genusBacteroides0.2594.89e-302.59e-29
speciesButyrivibrio_crossotus-0.2589.19e-304.82e-29
speciesStreptococcus_mitis_oralis_pneumoniae0.2571.14e-295.91e-29
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2571.23e-296.31e-29
speciesRuminococcus_lactaris-0.2562.67e-291.36e-28
speciesCollinsella_aerofaciens-0.2553.29e-291.65e-28
speciesClostridium_citroniae0.2554.04e-292.01e-28
phylumProteobacteria0.2546.62e-293.25e-28
genusPseudoflavonifractor-0.2512.94e-281.42e-27
speciesPseudoflavonifractor_capillosus-0.2512.94e-281.42e-27
classClostridia-0.254.21e-281.99e-27
orderClostridiales-0.254.21e-281.99e-27
speciesAlistipes_indistinctus-0.254.59e-282.15e-27
speciesEubacterium_biforme-0.2481.14e-275.28e-27
speciesMegasphaera_micronuciformis0.2481.35e-276.19e-27
genusKlebsiella0.2464.07e-271.85e-26
genusCoprobacter-0.2456.24e-272.78e-26
speciesCoprobacter_fastidiosus-0.2456.24e-272.78e-26
speciesEubacterium_dolichum0.2456.99e-273.08e-26
speciesEubacterium_ventriosum-0.2423.1e-261.35e-25
speciesRuminococcus_callidus-0.246.86e-262.97e-25
genusClostridiales_noname0.247.33e-263.15e-25
speciesKlebsiella_pneumoniae0.2372.41e-251.02e-24
genusDesulfovibrio-0.2373.05e-251.29e-24
genusFaecalibacterium-0.2357.82e-253.24e-24
speciesFaecalibacterium_prausnitzii-0.2357.82e-253.24e-24
speciesEggerthella_lenta0.2322.99e-241.23e-23
familyBacillales_noname0.2256.52e-232.63e-22
genusGemella0.2256.52e-232.63e-22
speciesClostridium_leptum-0.2249.39e-233.76e-22
speciesOlsenella_unclassified-0.2249.77e-233.88e-22
speciesFusobacterium_nucleatum0.2231.41e-225.55e-22
genusCollinsella-0.2231.83e-227.14e-22
familyClostridiales_noname0.2213.59e-221.39e-21
speciesCoprococcus_eutactus-0.2172.75e-211.06e-20
speciesClostridium_sp_L2_50-0.2156.06e-212.31e-20
speciesLachnospiraceae_bacterium_2_1_46FAA0.2131.18e-204.46e-20
speciesErysipelotrichaceae_bacterium_2_2_44A0.2112.54e-209.51e-20
genusParaprevotella-0.2088.72e-203.24e-19
speciesParaprevotella_unclassified-0.2089.64e-203.55e-19
speciesParaprevotella_xylaniphila-0.2071.34e-194.9e-19
speciesAlistipes_onderdonkii-0.2061.96e-197.12e-19
speciesVeillonella_parvula0.2045.64e-192.03e-18
speciesRuminococcus_obeum-0.2036.63e-192.37e-18
speciesMethanobrevibacter_unclassified-0.2038.95e-193.18e-18
orderBacillales0.2029.69e-193.41e-18
speciesParaprevotella_clara-0.1977.52e-182.63e-17
genusVeillonella0.1979.72e-183.37e-17
speciesPrevotella_buccae0.1961.34e-174.62e-17
genusCatenibacterium-0.1933.83e-171.3e-16
speciesCatenibacterium_mitsuokai-0.1933.83e-171.3e-16
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1917.12e-172.4e-16
genusPeptostreptococcus0.191.07e-163.58e-16
genusAdlercreutzia-0.1891.57e-165.18e-16
speciesAdlercreutzia_equolifaciens-0.1891.57e-165.18e-16
speciesClostridium_asparagiforme0.1891.79e-165.87e-16
genusOlsenella-0.1864.96e-161.61e-15
phylumFirmicutes-0.1865.85e-161.89e-15
genusSolobacterium0.1856.75e-162.15e-15
speciesSolobacterium_moorei0.1856.75e-162.15e-15
speciesButyrivibrio_unclassified-0.1841.16e-153.67e-15
speciesLactobacillus_salivarius0.1831.32e-154.15e-15
genusDorea-0.1831.33e-154.16e-15
speciesStreptococcus_anginosus0.1831.75e-155.43e-15
speciesDesulfovibrio_piger-0.1821.85e-155.71e-15
speciesEubacterium_hallii-0.1821.88e-155.76e-15
genusPantoea0.1821.92e-155.81e-15
speciesPantoea_unclassified0.1821.92e-155.81e-15
speciesBacteroides_pectinophilus-0.1813.56e-151.07e-14
genusEnterococcus0.1762.03e-146.06e-14
familyEnterococcaceae0.1752.27e-146.74e-14
speciesDesulfovibrio_desulfuricans-0.1743.42e-141.01e-13
speciesVeillonella_dispar0.1735.85e-141.72e-13
speciesRuminococcus_champanellensis-0.1727.77e-142.26e-13
speciesPeptostreptococcus_stomatis0.1682.55e-137.38e-13
speciesParabacteroides_merdae-0.1682.8e-138.06e-13
speciesStreptococcus_sanguinis0.1673.41e-139.75e-13
speciesRuminococcus_bromii-0.1641.12e-123.18e-12
speciesLactobacillus_ruminis-0.1621.86e-125.26e-12
familyActinomycetaceae0.1612.78e-127.81e-12
genusActinomyces0.1594.24e-121.18e-11
speciesEubacterium_sp_3_1_310.1594.58e-121.27e-11
genusRuminococcaceae_noname-0.1595.05e-121.39e-11
speciesRuminococcaceae_bacterium_D16-0.1595.05e-121.39e-11
genusMegamonas0.1585.51e-121.5e-11
speciesMegamonas_unclassified0.1586.08e-121.65e-11
genusStreptococcus0.1586.39e-121.72e-11
speciesVeillonella_atypica0.1586.99e-121.87e-11
familyStreptococcaceae0.1577.84e-122.09e-11
speciesVeillonella_unclassified0.1542.13e-115.65e-11
speciesClostridium_perfringens0.1542.42e-116.38e-11
classBacilli0.1532.52e-116.61e-11
genusMegasphaera0.1533.2e-118.34e-11
orderLactobacillales0.156.43e-111.67e-10
genusRuminococcus-0.156.92e-111.78e-10
familyPrevotellaceae-0.158.14e-112.09e-10
speciesCampylobacter_concisus0.1498.34e-112.13e-10
speciesDorea_formicigenerans-0.1499e-112.28e-10
speciesErysipelotrichaceae_bacterium_3_1_530.1491.07e-102.7e-10
speciesSutterella_wadsworthensis-0.1471.76e-104.42e-10
speciesBifidobacterium_pseudocatenulatum0.1471.93e-104.82e-10
speciesClostridium_sp_ATCC_BAA_4420.1462.4e-105.96e-10
speciesLactobacillus_mucosae0.1391.71e-094.23e-09
familyAcidaminococcaceae-0.1372.69e-096.61e-09
speciesStreptococcus_pasteurianus0.1372.86e-096.99e-09
speciesEscherichia_unclassified0.1372.88e-097.01e-09
genusAggregatibacter0.1363.27e-097.92e-09
speciesStreptococcus_gordonii0.1363.77e-099.08e-09
speciesStreptococcus_australis0.1354.66e-091.12e-08
speciesStreptococcus_lutetiensis0.1354.71e-091.12e-08
speciesAlistipes_sp_AP11-0.1346.58e-091.56e-08
genusButyricicoccus0.1337.43e-091.74e-08
speciesButyricicoccus_pullicaecorum0.1337.43e-091.74e-08
genusButyricimonas-0.1329.76e-092.27e-08
speciesButyricimonas_synergistica-0.1329.76e-092.27e-08
genusSutterella-0.1321.04e-082.41e-08
speciesStreptococcus_infantarius0.1321.06e-082.44e-08
speciesEnterococcus_faecalis0.1321.08e-082.47e-08
genusClostridiaceae_noname0.131.91e-084.33e-08
speciesClostridiaceae_bacterium_JC1180.131.91e-084.33e-08
speciesAggregatibacter_segnis0.1292.23e-085.04e-08
speciesRoseburia_inulinivorans-0.1292.39e-085.37e-08
speciesKlebsiella_unclassified0.1282.65e-085.93e-08
speciesClostridium_bartlettii0.1282.7e-086.01e-08
genusPhascolarctobacterium-0.1282.96e-086.53e-08
speciesPhascolarctobacterium_succinatutens-0.1282.96e-086.53e-08
speciesBacteroides_stercoris0.1283.12e-086.85e-08
speciesBacteroides_cellulosilyticus-0.1273.49e-087.61e-08
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1273.5e-087.61e-08
speciesOscillibacter_unclassified-0.1273.87e-088.38e-08
speciesMegamonas_rupellensis0.1265.03e-081.08e-07
speciesGemella_morbillorum0.1255.25e-081.13e-07
speciesCollinsella_intestinalis0.1255.64e-081.2e-07
speciesMitsuokella_multacida-0.1248.03e-081.71e-07
speciesBacteroides_thetaiotaomicron0.1231.05e-072.22e-07
speciesStreptococcus_vestibularis0.1211.4e-072.95e-07
genusLachnospiraceae_noname0.1211.66e-073.48e-07
genusMethanosphaera-0.121.81e-073.76e-07
speciesMethanosphaera_stadtmanae-0.121.81e-073.76e-07
speciesCitrobacter_unclassified0.121.98e-074.1e-07
familyPorphyromonadaceae-0.1192.52e-075.19e-07
genusCampylobacter0.1192.68e-075.5e-07
speciesStreptococcus_salivarius0.1182.92e-075.97e-07
familyOscillospiraceae-0.1173.54e-077.17e-07
genusOscillibacter-0.1173.54e-077.17e-07
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1173.96e-077.99e-07
speciesParabacteroides_unclassified0.1173.99e-078.01e-07
genusMorganella0.1174.28e-078.52e-07
speciesMorganella_morganii0.1174.28e-078.52e-07
speciesHaemophilus_paraphrohaemolyticus0.1165.03e-079.98e-07
speciesEnterococcus_faecium0.1156.75e-071.33e-06
genusCitrobacter0.1146.99e-071.37e-06
familyCampylobacteraceae0.1147.21e-071.41e-06
familyPeptostreptococcaceae0.1131.06e-062.07e-06
speciesAnaerostipes_hadrus-0.1111.38e-062.68e-06
speciesEubacterium_cylindroides-0.1092.36e-064.57e-06
speciesBacteroides_ovatus0.1092.41e-064.64e-06
speciesC2likevirus_unclassified-0.1082.59e-064.97e-06
familyLeuconostocaceae0.1073.18e-066.08e-06
genusC2likevirus-0.1073.28e-066.24e-06
speciesErysipelotrichaceae_bacterium_6_1_450.1073.47e-066.58e-06
orderActinomycetales0.1073.63e-066.85e-06
speciesBacteroides_uniformis-0.1064.28e-068.05e-06
speciesRuminococcus_torques0.1064.44e-068.32e-06
speciesStreptococcus_mutans0.1046.51e-061.21e-05
speciesWeissella_cibaria0.1047.05e-061.31e-05
speciesCitrobacter_freundii0.1037.65e-061.42e-05
speciesAlistipes_sp_HGB5-0.1021.02e-051.88e-05
classEpsilonproteobacteria0.1021.09e-051.99e-05
orderCampylobacterales0.1021.09e-051.99e-05
speciesLactobacillus_crispatus0.1011.16e-052.11e-05
speciesLactobacillus_fermentum0.1011.26e-052.29e-05
genusWeissella0.11.35e-052.44e-05
familySutterellaceae-0.11.57e-052.83e-05
speciesClostridium_sp_KLE_17550.0982.05e-053.68e-05
genusRoseburia-0.0982.15e-053.84e-05
speciesBifidobacterium_dentium0.0972.47e-054.4e-05
familySiphoviridae-0.0972.59e-054.6e-05
orderCoriobacteriales-0.0972.72e-054.79e-05
familyCoriobacteriaceae-0.0972.72e-054.79e-05
familyClostridiales_Family_XI_Incertae_Sedis0.0972.73e-054.79e-05
speciesHoldemania_sp_AP20.0972.76e-054.82e-05
speciesDialister_succinatiphilus-0.0962.98e-055.19e-05
speciesProteus_mirabilis0.0954.18e-057.25e-05
genusPeptostreptococcaceae_noname0.0944.87e-058.42e-05
familyVeillonellaceae0.0944.9e-058.44e-05
orderBurkholderiales-0.0926.94e-050.000119
familyLactobacillaceae0.0927.1e-050.000121
classBacteroidia0.0927.36e-050.000125
orderBacteroidales0.0927.36e-050.000125
phylumBacteroidetes0.0927.39e-050.000125
speciesBifidobacterium_breve0.0917.86e-050.000132
speciesLactococcus_phage_936_sensu_lato-0.099.46e-050.000159
speciesBifidobacterium_angulatum-0.099.59e-050.000161
genusActinobacillus0.090.0001050.000175
speciesActinobacillus_unclassified0.090.0001050.000175
speciesLactococcus_phage_P680-0.0890.0001120.000185
speciesMegamonas_hypermegale0.0890.0001240.000205
speciesRothia_mucilaginosa0.0890.0001270.000209
speciesStreptococcus_parasanguinis0.0880.0001450.000238
genusAcidaminococcaceae_unclassified-0.0870.0001530.00025
speciesAnaerotruncus_colihominis0.0870.0001580.000257
speciesEubacterium_limosum0.0870.0001650.000268
speciesLactobacillus_gasseri0.0870.0001760.000284
speciesHoldemania_unclassified-0.0860.0001810.000292
speciesLactobacillus_vaginalis0.0860.0001880.000302
speciesLactobacillus_oris0.0860.0002030.000325
genusLactobacillus0.0850.0002260.00036
speciesEnterobacter_aerogenes0.0840.0002690.000428
classDeltaproteobacteria-0.0840.0002960.000466
orderDesulfovibrionales-0.0840.0002960.000466
familyDesulfovibrionaceae-0.0840.0002960.000466
speciesEnterobacter_cloacae0.0830.0003090.000485
genusPeptoniphilus0.0830.0003190.000499
classBetaproteobacteria-0.0830.0003350.000522
genusProteus0.0830.0003390.000526
familyMicrococcaceae0.0820.0003870.000599
genusRothia0.0820.0004060.000626
genusEnterobacter0.0810.0004420.00068
speciesOdoribacter_laneus-0.0810.000450.00069
speciesPeptostreptococcaceae_noname_unclassified-0.080.0005730.000875
speciesKlebsiella_oxytoca0.0790.0006530.000994
speciesRoseburia_intestinalis-0.0790.0006650.001
phylumViruses_noname-0.0790.0006660.001
classViruses_noname-0.0790.0006660.001
familyMyoviridae0.0770.0008160.00123
speciesHaemophilus_sputorum0.0770.0008270.00124
genusParasutterella-0.0760.001030.00153
speciesParasutterella_excrementihominis-0.0760.001030.00153
speciesLactobacillus_rhamnosus0.0740.001370.00203
speciesHaemophilus_parainfluenzae0.0720.001860.00275
orderPasteurellales0.0720.001940.00284
familyPasteurellaceae0.0720.001940.00284
genusHaemophilus0.0720.001940.00284
speciesTuricibacter_unclassified-0.070.002520.00368
speciesParabacteroides_sp_D13-0.070.002540.0037
speciesLactobacillus_amylovorus0.0690.002710.00394
speciesOdoribacter_unclassified-0.0690.002820.00408
genusTuricibacter-0.0690.002830.00408
speciesParvimonas_unclassified0.0690.002870.00413
genusParvimonas0.0690.002890.00415
orderCaudovirales-0.0680.003160.00452
speciesEggerthella_sp_1_3_56FAA0.0680.003270.00466
genusLeuconostoc0.0660.004030.00573
genusMyoviridae_noname0.0660.004230.006
speciesKlebsiella_sp_MS_92_30.0660.004550.00643
speciesBacteroides_vulgatus0.0650.004640.00654
speciesEnterobacteria_phage_HK5440.0630.006450.00906
speciesWeissella_confusa0.0630.006730.00943
speciesBacteroides_coprophilus-0.0620.006960.00972
speciesBacteroides_salanitronis-0.0610.008060.0112
speciesBacteroides_xylanisolvens0.0610.008240.0114
speciesBlautia_hydrogenotrophica0.0590.01060.0147
speciesBifidobacterium_catenulatum-0.0590.01130.0156
speciesDorea_unclassified0.0570.01370.0189
speciesLactococcus_phage_phi7-0.0570.01420.0195
speciesHoldemania_filiformis-0.0560.01490.0204
genusSiphoviridae_noname-0.0550.01640.0224
speciesBacteroides_dorei-0.0550.01670.0227
speciesPrevotella_bivia0.0550.01690.0229
speciesBacteroides_barnesiae-0.0540.02010.0272
speciesSutterella_parvirubra0.0530.0220.0297
familySuccinivibrionaceae-0.0530.02240.0301
speciesLactococcus_garvieae0.0520.02450.0329
speciesBacteroides_intestinalis-0.0520.02580.0345
speciesLactobacillus_plantarum0.0510.02690.0359
speciesPrevotella_stercorea0.0510.02730.0363
speciesBacteroides_oleiciplenus0.050.02980.0395
speciesBacteroides_caccae-0.050.03020.0399
genusSuccinatimonas-0.050.03180.0418
speciesSuccinatimonas_hippei-0.050.03180.0418
genusSutterellaceae_unclassified-0.0490.0340.0446
speciesAcidaminococcus_fermentans-0.0490.03450.0451
speciesTuricibacter_sanguinis-0.0480.0370.0482
speciesPrevotella_copri-0.0470.04180.0544
speciesStreptococcus_phage_Sfi210.0460.0450.0584
speciesAcidaminococcus_intestini0.0460.04590.0592
speciesStreptococcus_thermophilus-0.0460.04590.0592
speciesSubdoligranulum_sp_4_3_54A2FAA0.0460.04620.0594
speciesCoprobacillus_sp_D60.0450.05080.0652
speciesRoseburia_unclassified-0.0450.05130.0656
speciesLactococcus_phage_jm2-0.0450.05210.0665
familyBurkholderiales_noname-0.0450.05430.0688
genusBurkholderiales_noname-0.0440.05450.0688
speciesLeuconostoc_lactis0.0440.05450.0688
speciesBurkholderiales_bacterium_1_1_47-0.0440.05450.0688
speciesClostridium_spiroforme0.0430.06390.0804
speciesRuminococcus_sp_5_1_39BFAA-0.0430.06430.0807
speciesMegasphaera_unclassified0.0430.0650.0814
genusAnaerostipes0.0420.0670.0837
phylumActinobacteria-0.0420.06980.0866
classActinobacteria-0.0420.06980.0866
speciesBacteroides_sp_3_1_190.0420.06990.0866
speciesBacteroides_eggerthii-0.0410.07730.0955
orderViruses_noname-0.040.08010.0985
speciesParabacteroides_goldsteinii-0.040.08010.0985
speciesBacteroides_plebeius0.0390.090.11
speciesCoprobacillus_sp_29_10.0380.09650.118
speciesLactobacillus_delbrueckii0.0380.1020.124
genusBifidobacterium-0.0370.1070.13
genusPorphyromonas-0.0370.1110.135
classErysipelotrichia0.0360.1160.14
orderErysipelotrichales0.0360.1160.14
familyErysipelotrichaceae0.0360.1160.14
speciesCollinsella_unclassified0.0360.120.144
genusPrevotella-0.0340.1420.17
orderBifidobacteriales-0.0340.1440.172
familyBifidobacteriaceae-0.0340.1440.172
genusDialister-0.0330.1480.176
speciesPropionibacterium_freudenreichii-0.0330.1560.185
speciesBacteroides_finegoldii-0.0330.1560.185
speciesCoriobacteriaceae_bacterium_phI0.0330.1570.185
speciesLachnospiraceae_bacterium_1_1_57FAA0.0330.1570.185
speciesLachnospiraceae_bacterium_5_1_63FAA0.0320.1620.19
speciesParabacteroides_sp_20_3-0.0320.1640.192
speciesLactobacillus_sanfranciscensis0.0320.170.199
speciesParabacteroides_johnsonii-0.0320.1720.2
speciesBacteroides_faecis-0.0320.1720.2
genusCoriobacteriaceae_noname0.0310.1830.212
orderPseudomonadales0.030.1940.224
speciesBacteroides_fluxus0.0290.2060.238
speciesPorphyromonas_asaccharolytica-0.0290.2150.248
speciesPeptostreptococcus_anaerobius0.0280.2190.252
speciesBifidobacterium_animalis-0.0280.2210.253
speciesBifidobacterium_bifidum-0.0260.2570.294
speciesBacteroides_massiliensis0.0260.2630.3
speciesBacteroides_sp_1_1_6-0.0260.2650.301
familyStaphylococcaceae0.0250.2720.309
classNegativicutes0.0250.2760.312
orderSelenomonadales0.0250.2760.312
genusSlackia0.0250.2890.325
speciesCollinsella_tanakaei0.0250.2890.325
speciesMegamonas_funiformis0.0240.3090.346
familyLachnospiraceae-0.0230.3110.348
speciesKlebsiella_phage_KP36-0.0210.3590.401
speciesAlistipes_unclassified0.0210.360.401
genusGordonibacter-0.0210.3750.415
speciesGordonibacter_pamelaeae-0.0210.3750.415
speciesBacteroides_sp_2_1_220.020.3960.438
speciesBilophila_unclassified-0.020.3970.438
genusBilophila-0.0190.4030.443
speciesErysipelotrichaceae_bacterium_21_30.0180.4250.467
speciesLactobacillus_acidophilus-0.0180.4260.467
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0180.4360.476
speciesDialister_invisus0.0180.4480.488
speciesPorphyromonas_uenonis0.0160.4760.518
speciesLactobacillus_casei_paracasei0.0160.4890.531
speciesBilophila_wadsworthia-0.0160.4920.533
speciesBifidobacterium_longum-0.0160.5010.541
speciesBacteroides_coprocola0.0150.5140.554
genusStaphylococcus0.0150.520.559
genusPyramidobacter0.0130.5680.608
speciesPyramidobacter_piscolens0.0130.5680.608
speciesBacteroides_salyersiae0.0130.5720.609
familyViruses_noname0.0130.5730.609
genusViruses_noname0.0130.5730.609
speciesRuminococcus_sp_JC3040.0120.6190.657
speciesLactobacillus_reuteri0.0110.6210.657
genusHoldemania-0.0110.6280.663
familyPropionibacteriaceae0.0110.6460.681
genusTunalikevirus-0.010.6550.689
genusLactococcus0.010.6690.702
genusLambdalikevirus0.010.6770.707
speciesBacteroides_clarus-0.010.6770.707
speciesBacteroides_sp_4_3_47FAA-0.0090.6940.723
orderAeromonadales-0.0090.6970.725
speciesOscillibacter_sp_KLE_17280.0090.7070.733
speciesAcidaminococcus_unclassified-0.0080.7440.77
speciesMegasphaera_elsdenii-0.0070.7540.779
speciesSlackia_piriformis0.0070.7580.781
genusParabacteroides0.0070.770.791
speciesLactococcus_phage_bIL67-0.0070.7710.791
speciesOscillibacter_sp_KLE_1745-0.0060.7920.811
genusPropionibacterium0.0060.7980.815
speciesBacteroides_nordii0.0060.810.826
familyPodoviridae0.0050.8310.845
speciesParabacteroides_distasonis0.0040.8780.89
speciesLactococcus_lactis0.0040.8790.89
genusAcidaminococcus-0.0030.9060.916
phylumSynergistetes0.0020.9180.92
classSynergistia0.0020.9180.92
orderSynergistales0.0020.9180.92
familySynergistaceae0.0020.9180.92
genusErysipelotrichaceae_noname-0.0010.9650.965
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.007252580067740.001430469389182.29628001506e-0817595.90883
Crohns diseaseSpain17660.009970001640250.0007273633377595.9138727729e-08320.106401
ObesityDenmark1691230.0006933558365070.0005874524933410.0246460325953351711.5649
Colorectal cancerAustria64350.008212622605740.01058582100960.2553583867881068936.1652
Type II diabetesChina1831850.006148419477070.004497355956270.2781247565551558351.4987
Type II diabetesSweden53920.0009435898929640.001571507583640.3584465500831193840.4267
Type II diabetesDenmark752770.0003360173096840.0005154235095550.8821301949342825892.6279
Rheumatoid arthritisChina127980.004044215515490.004679027721560.9292357364682830594.3909
Ulcerative colitisSpain78660.001546903107410.0007273633377590.9773831699062984698.4562
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382