MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-18 18:28:27 PST
Job id & description: 1690, igcpyd3
Query type: protein
Count queries & homologs: 100, 199
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0343_GL01730041140887CompleteK01580COG0076unknownunknown100.0100.0100.0
160765029-stool1_revised1144621CompleteK01580COG0076unknownunknown100.0100.0100.0
195102.CPE20581138275CompleteK01580COG0076FirmicutesClostridium100.0100.0100.0
DOM005_GL00524621143604CompleteK01580COG0076unknownunknown100.0100.0100.0
V1.CD18-3_GL00287971169173CompleteK01580COG0076FusobacteriaFusobacterium100.0100.0100.0
V1.FI14_GL00388841156328CompleteK01580COG0076unknownunknown100.0100.0100.0
O2.UC17-1_GL00035251168687CompleteK01580COG0076FirmicutesStreptococcus100.0100.0100.0
V1.CD7-0-PN_GL00233411176371CompleteK01580COG0076FirmicutesLactobacillus100.0100.0100.0
158802708-stool2_revised1235918Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
158499257-stool2_revised1250647Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
160400887-stool1_revised1280237Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
MH0229_GL02094801268031Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251302442Lack both endsK01580COG0076BacteroidetesBacteroides100.0100.0100.0
MH0020_GL0003925934653Lack 5'-endK01580COG0076BacteroidetesBacteroides100.088.299.55
V1.UC40-0_GL00372961198266CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0020_GL0003925936406Lack 5'-endK01580COG0076BacteroidetesBacteroides100.088.298.41
160400887-stool1_revised1131333CompleteK01580COG0076unknownunknown100.095.4896.17
MH0020_GL0003925917911Lack 5'-endK01580COG0076BacteroidetesBacteroides100.087.597.73
MH0149_GL00103981371283CompleteK01580COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251035503CompleteK01580COG0076BacteroidetesBacteroides100.091.6897.05
MH0020_GL00039251033054CompleteK01580COG0076BacteroidetesBacteroides100.091.6896.83
MH0020_GL0003925903647Lack 5'-endK01580COG0076BacteroidetesBacteroides100.086.9897.28
MH0020_GL00039251033042CompleteK01580COG0076BacteroidetesBacteroides100.091.6897.05
158499257-stool2_revised1075728CompleteK01580COG0076unknownunknown100.094.5194.87
MH0020_GL0003925917381Lack 5'-endK01580COG0076BacteroidetesBacteroides100.087.597.05
MH0020_GL00039251053182CompleteK01580COG0076BacteroidetesBacteroides100.092.2696.83
MH0020_GL00039251047906CompleteK01580COG0076BacteroidetesBacteroides100.092.2696.83
MH0020_GL00039251041009CompleteK01580COG0076BacteroidetesBacteroides100.091.8896.83
MH0020_GL00039251046790CompleteK01580COG0076BacteroidetesBacteroides100.092.0796.37
MH0020_GL00039251034341CompleteK01580COG0076BacteroidetesBacteroides100.091.6896.37
MH0020_GL0003925763696CompleteK01580COG0076BacteroidetesBacteroides99.7781.0396.82
158499257-stool2_revised1072583CompleteK01580COG0076unknownunknown100.094.5194.2
195102.CPE20581125222CompleteK01580COG0076FirmicutesClostridium100.0100.090.34
MH0020_GL0003925927520Lack 5'-endK01580COG0076BacteroidetesBacteroides100.087.8597.05
MH0020_GL00039251003041Lack 5'-endK01580COG0076BacteroidetesBacteroides100.090.5596.6
MH0020_GL0003925991221Lack 5'-endK01580COG0076BacteroidetesBacteroides100.090.1896.6
MH0020_GL00039251052093CompleteK01580COG0076BacteroidetesBacteroides100.092.2696.6
MH0020_GL00039251102468Lack 5'-endK01580COG0076BacteroidetesBacteroides100.094.0396.15
MH0020_GL00039251052364CompleteK01580COG0076BacteroidetesBacteroides100.092.2696.15
MH0020_GL00039251014506Lack 5'-endK01580COG0076BacteroidetesBacteroides100.091.1296.15
MH0020_GL00039251052360CompleteK01580COG0076BacteroidetesBacteroides100.092.2695.69
556268.OFAG_017041410565CompleteK01590COG0076ProteobacteriaOxalobacter100.0100.0100.0
MH0020_GL00039251052672CompleteK01580COG0076BacteroidetesBacteroides100.092.2695.69
160400887-stool1_revised1126953CompleteK01580COG0076unknownunknown100.095.4893.69
MH0020_GL0003925999737CompleteK01580COG0076BacteroidetesBacteroides100.090.5594.78
575599.HMPREF0513_009021452702CompleteK01580COG0076FirmicutesLactobacillus100.0100.0100.0
MH0020_GL00039251036979CompleteK01580COG0076BacteroidetesBacteroides100.091.8894.56
MH0366_GL01330811414104CompleteK04487COG1104unknownunknown100.0100.0100.0
V1.CD22-0_GL02440851374892Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251036542CompleteK01580COG0076BacteroidetesBacteroides100.091.8893.65
MH0141_GL00705771503476CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251049107CompleteK01580COG0076BacteroidetesBacteroides100.092.2692.74
809635352-stool1_revised1501829CompleteK01592COG0076unknownunknown100.0100.0100.0
V1.UC54-4_GL01185481524830Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
MH0020_GL00039251031980CompleteK01580COG0076Bacteroidetesunknown100.091.6891.16
T2D-78A_GL00242401534424Lack 5'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
MH0250_GL02676961554845CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0415_GL02032911565136Lack both endsK01580COG0076ProteobacteriaEscherichia100.0100.0100.0
160400887-stool1_revised1105294Lack 5'-endK01580COG0076BacteroidetesOdoribacter100.094.6788.96
656420.ERJG_026071596329CompleteK01580COG0076ProteobacteriaEscherichia100.0100.0100.0
160400887-stool1_revised1119132CompleteK01580COG0076Bacteroidetesunknown100.095.2889.41
MH0369_GL00936771573377Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
MH0415_GL0203291993070CompleteK01580COG0076ProteobacteriaEscherichia99.7683.4497.79
MH0457_GL00766961592024CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0409_GL00681631556326Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251035210Lack 5'-endK01580COG0076BacteroidetesBacteroides99.3291.0689.5
160400887-stool1_revised1121614CompleteK01580COG0076unknownunknown100.095.2887.39
MH0020_GL00039251040707CompleteK01580COG0076Bacteroidetesunknown100.091.8888.89
656420.ERJG_026071125248CompleteK01580COG0076ProteobacteriaEscherichia100.087.1296.8
MH0369_GL00936771061837Lack 3'-endK01580COG0076unknownunknown100.085.5396.57
MH0369_GL00936771050234CompleteK01580COG0076unknownunknown100.085.3696.57
O2.CD1-0_GL00590801619272CompleteK01592COG0076unknownunknown100.0100.0100.0
V1.FI05_GL00426981688215Lack 3'-endK01580COG0076ActinobacteriaEggerthella100.0100.0100.0
MH0020_GL00039251075604CompleteK01580COG0076Bacteroidetesunknown100.093.0488.21
MH0369_GL00936771049235CompleteK01580COG0076unknownunknown100.085.3696.57
MH0020_GL00039251075921CompleteK01580COG0076Bacteroidetesunknown100.093.0487.76
MH0369_GL00936771052902CompleteK01580COG0076unknownunknown100.085.3696.08
656420.ERJG_026071125249CompleteK01580COG0076ProteobacteriaEscherichia100.087.1295.81
MH0369_GL00936771049216CompleteK01580COG0076unknownunknown100.085.3695.34
MH0020_GL00039251018674Lack 5'-endK01580COG0076BacteroidetesBacteroides100.091.1286.39
MH0369_GL0093677962350CompleteK01580COG0076unknownunknown100.082.4295.59
MH0020_GL00039251025458CompleteK01580COG0076BacteroidetesBacteroides100.091.4986.17
T2D-78A_GL00242401062982CompleteK01593COG0076FirmicutesBlautia100.086.5593.45
MH0020_GL0003925976304CompleteK01580COG0076Bacteroidetesunknown99.7789.4386.82
MH0020_GL00039251026794CompleteK01580COG0076BacteroidetesBacteroides100.091.4985.71
T2D-78A_GL00242401062773CompleteK01593COG0076FirmicutesBlautia100.086.5593.2
MH0020_GL00039251026047CompleteK01580COG0076BacteroidetesBacteroides100.091.4985.49
MH0020_GL00039251051093CompleteK01580COG0076Bacteroidetesunknown99.7792.0585.0
MH0020_GL00039251020248CompleteK01580COG0076Bacteroidetesunknown99.7791.185.91
MH0020_GL00039251037668CompleteK01580COG0076Bacteroidetesunknown99.7791.6785.23
MH0020_GL0003925996300Lack 5'-endK01580COG0076Bacteroidetesunknown99.7790.1685.23
MH0020_GL00039251052757CompleteK01580COG0076BacteroidetesParabacteroides99.7792.0586.36
MH0020_GL00039251042017CompleteK01580COG0076BacteroidetesParabacteroides99.7791.8686.14
MH0020_GL00039251039010CompleteK01580COG0076Bacteroidetesunknown99.7791.6785.0
MH0020_GL00039251040955CompleteK01580COG0076Bacteroidetesunknown100.091.8885.26
MH0020_GL0003925818604CompleteK01580COG0076BacteroidetesParabacteroides99.7783.4985.91
MH0020_GL0003925983408CompleteK01580COG0076BacteroidetesParabacteroides99.7789.885.91
MH0233_GL01134601781930CompleteK11717COG0520unknownunknown100.0100.0100.0
MH0020_GL00039251029646CompleteK01580COG0076BacteroidetesBacteroides100.091.4984.58
O2.UC29-1_GL00672571775349CompleteK01590COG0076unknownunknown100.0100.0100.0
656420.ERJG_02607972809CompleteK01580COG0076ProteobacteriaEscherichia100.087.8390.37
339860.Msp_03291750555CompleteK01592COG0076EuryarchaeotaMethanosphaera100.0100.0100.0
MH0020_GL00039251040372CompleteK01580COG0076Bacteroidetesunknown100.091.8884.13
NLM027_GL00626971816416CompleteK01590COG0076ProteobacteriaEnterobacter100.0100.0100.0
O2.UC51-2_GL00795351775685CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251043703CompleteK01580COG0076Bacteroidetesunknown99.7791.8685.68
MH0020_GL00039251047323CompleteK01580COG0076Bacteroidetesunknown99.7791.8685.0
MH0020_GL00039251036664CompleteK01580COG0076unknownunknown99.7791.6783.41
158802708-stool1_revised1827390CompleteK01590COG0076unknownunknown100.0100.0100.0
V1.CD3-0-PT_GL00699431854472CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0006_GL00041421818638CompleteK11717COG0520unknownunknown100.0100.0100.0
MH0020_GL00039251042408CompleteK01580COG0076Bacteroidetesunknown99.7791.8684.55
O2.UC41-2_GL00475141775512Lack 5'-endK01592COG0076EuryarchaeotaMethanobrevibacter100.0100.0100.0
MH0020_GL0003925872687CompleteK01580COG0076Bacteroidetesunknown99.7785.684.77
V1.CD46-0_GL00225491834557CompleteK11717COG0520unknownunknown100.0100.0100.0
MH0293_GL00161791782496CompleteK01592COG0076EuryarchaeotaMethanobrevibacter100.0100.0100.0
MH0333_GL00506601821837CompleteK11717COG0520unknownunknown100.0100.0100.0
V1.CD17-4_GL01374981864205CompleteK11717COG0520unknownunknown100.0100.0100.0
MH0020_GL00039251038468CompleteK01580COG0076unknownunknown100.091.8882.31
MH0362_GL01809021812361CompleteK01590COG0076unknownunknown100.0100.0100.0
MH0020_GL00039251047289CompleteK01580COG0076unknownunknown99.3291.4482.19
V1.CD46-0_GL00225491833958CompleteK11717COG0520unknownunknown100.0100.097.89
MH0020_GL0003925892465CompleteK01580COG0076unknownunknown99.3286.0583.11
656420.ERJG_026071125353CompleteK01580COG0076Proteobacteriaunknown100.087.1289.41
V1.CD46-0_GL00225491837578CompleteK11717COG0520unknownunknown100.0100.096.84
V1.CD46-0_GL00225491830506CompleteK11717COG0520unknownunknown100.0100.096.32
MH0168_GL00017751984109Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
V1.CD46-0_GL00225491835167CompleteK11717COG0520unknownunknown100.0100.095.53
DLM013_GL00259991958762Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0143_GL01205831931366CompleteK04487COG1104unknownunknown100.0100.0100.0
V1.CD46-0_GL00225491830798CompleteK11717COG0520unknownunknown100.0100.095.26
575599.HMPREF0513_009021112243CompleteK01580COG0076FirmicutesMegasphaera100.090.1780.81
MH0006_GL00041421822976CompleteK11717COG0520unknownunknown100.0100.092.91
MH0369_GL00936771075727CompleteK01580COG0076unknownunknown98.7785.0283.37
MH0370_GL00330992148555Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
MH0452_GL00522952243712Lack both endsK01580COG0076Bacteroidetesunknown100.0100.0100.0
O2.CD2-0-PT_GL00020302243873CompleteK01620COG2008FirmicutesCoprobacillus100.0100.0100.0
T2D-78A_GL00242401082374CompleteK01593COG0076Firmicutesunknown98.7986.2380.59
T2D-78A_GL0024240966151CompleteK01593COG0076unknownunknown97.0980.9780.75
V1.UC13-3_GL00365412323111Lack both endsK01580COG0076ActinobacteriaEggerthella100.0100.0100.0
MH0233_GL01134601784426CompleteK11717COG0520unknownunknown100.0100.084.68
MH0233_GL01140072330195CompleteK01593COG0076unknownunknown100.0100.0100.0
V1.FI14_GL00248052309643Lack 5'-endK01590COG0076unknownunknown100.0100.0100.0
V1.FI20_GL00203912450556Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0233_GL01134601247816CompleteK11717COG0520unknownunknown100.085.9480.26
MH0186_GL00507072535590Lack 5'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
159753524-stool1_revised2573449Lack both endsK01593COG0076unknownunknown100.0100.0100.0
ED19A_GL00072802658665Lack 5'-endK01592COG0076unknownunknown100.0100.0100.0
V1.UC3-2_GL00204462556599Lack 5'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
MH0266_GL00911512621264Lack 5'-endK01580COG0076BacteroidetesAlistipes100.0100.0100.0
158337416-stool1_revised2573040Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
764588959-stool1_revised2646165Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
MH0250_GL02341272681030Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
158499257-stool2_revised2660258Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
O2.UC56-0_GL00278572730588Lack 5'-endK01580COG0076BacteroidetesBacteroides100.0100.0100.0
V1.UC35-0_GL00618272778730Lack 3'-endK01580COG0076FusobacteriaFusobacterium100.0100.0100.0
V1.UC5-3_GL00580292779036Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
V1.CD46-0_GL00225492687851Lack 3'-endK11717COG0520unknownunknown81.58100.097.1
V1.FI17_GL01874242793326Lack both endsK01582COG1982unknownunknown100.0100.0100.0
MH0433_GL02231572868083Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0400_GL00674862914684CompleteK01580COG0076FirmicutesLactobacillus100.0100.0100.0
NOM026_GL00135162873095Lack 3'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
MH0277_GL00285292961084Lack both endsK13745COG0076ProteobacteriaProteus100.0100.0100.0
MH0437_GL01343982931450Lack both endsK13745COG0076unknownunknown100.0100.0100.0
V1.UC30-0_GL00526943048555Lack 3'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
V1.CD3-0-PN_GL01305853111862Lack 3'-endK01580COG0076ActinobacteriaEggerthella100.0100.0100.0
763840445-stool2_revised3133612Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0367_GL01399763107817CompleteK01580COG0076unknownunknown100.0100.0100.0
159814214-stool2_revised3133286Lack 5'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
MH0145_GL00701163169582CompleteK01580COG0076unknownunknown100.0100.0100.0
MH0177_GL00668263218274Lack 5'-endK01580COG0076BacteroidetesAlistipes100.0100.0100.0
MH0370_GL00552123285876Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
MH0377_GL01125963334414Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
V1.CD12-3_GL00035613404230Lack 3'-endK01593COG0076Firmicutesunknown100.0100.0100.0
765034022-stool1_revised3377144Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
DOM012_GL00750113551489CompleteK01580COG0076unknownunknown100.0100.0100.0
T2D-11A_GL00261943590114Lack 5'-endK01580COG0076BacteroidetesAlistipes100.0100.0100.0
T2D-51A_GL00576463590645Lack 5'-endK01580COG0076BacteroidetesParabacteroides100.0100.0100.0
T2D-76A_GL00371403628642Lack 3'-endK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
V1.CD27-0_GL00023523604488Lack 3'-endK04487COG0520unknownunknown100.0100.0100.0
V1.CD4-0-PT_GL00158203699554Lack both endsK01580COG0076ProteobacteriaAeromonas100.0100.0100.0
ED19A_GL00502123665536Lack both endsK01590COG0076unknownunknown100.0100.0100.0
158256496-stool1_revised3723452Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
T2D-51A_GL00096083722908Lack 3'-endK01580COG0076BacteroidetesParabacteroides100.0100.0100.0
T2D-59A_GL01838423628483CompleteK13745COG0076unknownunknown100.0100.0100.0
158499257-stool2_revised3780465Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
O2.CD3-0-PT_GL01249123811117Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
V1.UC13-3_GL00818543814851Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
MH0277_GL00298823825888Lack both endsK01580COG0076Proteobacteriaunknown100.0100.0100.0
MH0196_GL00857613862604Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
MH0126_GL01239463822841Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
MH0196_GL00857614259693Lack both endsK01580COG0076BacteroidetesBacteroides92.08100.085.07
T2D-51A_GL00096084511932Lack 3'-endK01580COG0076Bacteroidetesunknown84.68100.090.0
T2D-51A_GL00096084274273Lack 3'-endK01580COG0076Bacteroidetesunknown85.8996.3885.92
V1.CD12-3_GL00035614355115Lack 3'-endK01593COG0076FirmicutesBlautia81.89100.084.33
V1.CD12-3_GL00035614182957Lack 3'-endK01593COG0076unknownunknown84.91100.080.89
MH0196_GL00857614584322Lack both endsK01580COG0076BacteroidetesBacteroides85.8399.5285.44
T2D-51A_GL00576464195388Lack 5'-endK01580COG0076BacteroidetesBacteroides86.2298.2180.82
T2D-51A_GL00576464188116Lack both endsK01580COG0076unknownunknown81.8992.4481.73
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.8330.00.0
genusBacteroides0.8330.00.0
phylumFirmicutes-0.6291.91e-2063.01e-204
phylumBacteroidetes0.6167.21e-1965.68e-194
classBacteroidia0.6167.22e-1965.68e-194
orderBacteroidales0.6167.22e-1965.68e-194
classClostridia-0.5516.55e-1493.86e-147
orderClostridiales-0.5516.55e-1493.86e-147
genusDorea-0.5235.26e-1322.76e-130
genusParabacteroides0.5149.11e-1274.3e-125
genusCoprococcus-0.5121.86e-1257.98e-124
speciesDorea_longicatena-0.5032.18e-1208.57e-119
familyRuminococcaceae-0.4952.52e-1169.15e-115
speciesCoprococcus_catus-0.4862.07e-1116.98e-110
speciesRuminococcus_obeum-0.4823.74e-1091.18e-107
speciesBacteroides_ovatus0.4782.53e-1077.46e-106
speciesBacteroides_thetaiotaomicron0.4676.18e-1021.72e-100
familyPorphyromonadaceae0.4541.15e-953.02e-94
speciesCoprococcus_comes-0.4526.24e-951.55e-93
speciesDorea_formicigenerans-0.4437.04e-911.66e-89
speciesCollinsella_aerofaciens-0.4381.95e-884.38e-87
orderCoriobacteriales-0.4263.74e-837.68e-82
familyCoriobacteriaceae-0.4263.74e-837.68e-82
phylumActinobacteria-0.421.3e-802.45e-79
classActinobacteria-0.421.3e-802.45e-79
speciesEubacterium_hallii-0.4184.35e-807.9e-79
genusCollinsella-0.416.98e-771.22e-75
familyLachnospiraceae-0.418.61e-771.45e-75
speciesClostridium_bolteae0.3941.98e-703.22e-69
speciesBifidobacterium_adolescentis-0.3891.94e-683.05e-67
genusFlavonifractor0.3824e-665.9e-65
speciesFlavonifractor_plautii0.3824e-665.9e-65
speciesClostridiales_bacterium_1_7_47FAA0.382.02e-652.89e-64
speciesBacteroides_uniformis0.3744.86e-636.75e-62
speciesEubacterium_ramulus-0.3692.85e-613.84e-60
speciesBacteroides_vulgatus0.3631.98e-592.6e-58
speciesBacteroides_fragilis0.3632.26e-592.88e-58
orderBifidobacteriales-0.3572.4e-572.9e-56
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speciesProteus_mirabilis0.0360.1160.145
speciesBacteroides_sp_3_1_190.0360.1170.146
speciesLachnospiraceae_bacterium_7_1_58FAA0.0360.1230.152
speciesAlistipes_sp_AP110.0360.1230.152
genusStaphylococcus-0.0350.1290.159
speciesBacteroides_eggerthii-0.0350.1340.165
familyPodoviridae0.0350.1350.166
genusCampylobacter0.0340.1370.168
speciesLactobacillus_mucosae-0.0330.150.183
speciesErysipelotrichaceae_bacterium_2_2_44A0.0330.1520.185
familyCampylobacteraceae0.0330.1590.193
speciesAlistipes_sp_HGB50.0320.170.206
speciesVeillonella_parvula0.0320.1720.208
genusPeptoniphilus0.030.190.229
speciesBlautia_hydrogenotrophica-0.030.1960.236
speciesEscherichia_unclassified0.030.20.24
speciesErysipelotrichaceae_bacterium_6_1_450.0280.2290.274
speciesCampylobacter_concisus0.0270.2350.281
familyViruses_noname-0.0270.2450.29
genusViruses_noname-0.0270.2450.29
speciesEubacterium_limosum0.0270.2450.29
speciesMegamonas_rupellensis0.0270.2450.29
genusMegasphaera0.0270.2490.294
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0260.2530.298
familyStaphylococcaceae-0.0260.2590.303
speciesAlistipes_unclassified-0.0260.2590.303
speciesLactobacillus_vaginalis-0.0250.2760.322
genusEnterobacter-0.0250.2810.327
speciesEnterobacter_cloacae-0.0240.3040.353
classEpsilonproteobacteria0.0240.3070.355
orderCampylobacterales0.0240.3070.355
speciesBacteroides_sp_4_3_47FAA0.0230.320.369
speciesKlebsiella_oxytoca-0.0230.3230.372
speciesBifidobacterium_breve-0.0220.3350.385
orderAeromonadales-0.0220.3430.393
speciesStreptococcus_infantarius0.0220.3480.398
speciesAlistipes_indistinctus-0.0210.3710.423
genusActinobacillus-0.020.3840.436
speciesActinobacillus_unclassified-0.020.3840.436
genusVeillonella0.020.3990.452
speciesAcidaminococcus_intestini0.0190.4060.458
speciesHaemophilus_parainfluenzae0.0190.4140.466
genusAcidaminococcaceae_unclassified0.0190.4220.474
genusHaemophilus0.0190.4230.474
speciesLactobacillus_salivarius0.0180.4270.478
orderPasteurellales0.0180.4350.484
familyPasteurellaceae0.0180.4350.484
speciesMegamonas_hypermegale-0.0180.4380.486
speciesCoriobacteriaceae_bacterium_phI0.0180.4450.493
speciesPorphyromonas_uenonis0.0180.4470.494
speciesOdoribacter_laneus-0.0170.4510.497
speciesVeillonella_atypica0.0170.4590.505
speciesLactococcus_phage_936_sensu_lato-0.0170.4640.509
genusCitrobacter0.0170.4740.519
genusCoriobacteriaceae_noname0.0160.5030.55
speciesLactobacillus_oris-0.0150.5150.561
genusSutterellaceae_unclassified-0.0150.5240.57
speciesBifidobacterium_pseudocatenulatum0.0130.5610.609
speciesDesulfovibrio_desulfuricans-0.0130.5730.62
speciesCitrobacter_unclassified0.0130.5770.623
speciesParabacteroides_sp_20_3-0.0130.580.625
speciesAcidaminococcus_unclassified0.0130.5820.626
genusMyoviridae_noname-0.0120.5940.637
speciesMegasphaera_unclassified-0.0120.6130.656
genusMegamonas0.0120.6170.659
speciesHaemophilus_sputorum-0.0110.6220.661
speciesCoprobacillus_sp_29_10.0110.6220.661
speciesMegamonas_unclassified0.0110.6260.664
speciesHoldemania_unclassified-0.010.6510.689
speciesLactococcus_phage_bIL670.010.6730.711
speciesHoldemania_filiformis-0.010.6790.715
speciesLactobacillus_amylovorus-0.0090.7020.737
speciesEnterobacter_aerogenes-0.0090.7030.737
genusPorphyromonas-0.0080.7150.748
speciesCitrobacter_freundii0.0080.7190.751
speciesAggregatibacter_segnis-0.0080.7430.774
speciesHaemophilus_paraphrohaemolyticus-0.0070.7480.777
speciesCoprobacillus_sp_D60.0070.7490.777
speciesPeptostreptococcus_anaerobius-0.0070.7520.778
speciesStreptococcus_lutetiensis0.0070.7620.787
speciesDialister_invisus0.0060.7860.81
speciesStreptococcus_phage_Sfi21-0.0060.7940.816
speciesBacteroides_faecis-0.0060.8010.821
speciesPorphyromonas_asaccharolytica0.0060.8020.821
speciesBacteroides_fluxus0.0060.8060.823
genusLambdalikevirus-0.0050.8430.859
genusAggregatibacter-0.0040.850.865
speciesVeillonella_unclassified0.0040.8650.878
speciesEggerthella_lenta0.0030.8890.9
familyMyoviridae-0.0030.9080.918
speciesClostridium_perfringens0.0020.9180.926
speciesKlebsiella_phage_KP360.0020.9290.935
genusAcidaminococcus-0.0020.9390.943
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0020.9410.943
genusTunalikevirus-0.0010.9540.954
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.3861668285260.1754842780733.6216578715e-064961.64921
Type II diabetesChina1831850.3305969380920.2820358273190.00789988458167341511.2859
ObesityDenmark1691230.1827987894740.1604031100330.0484648391924493616.231
Colorectal cancerAustria64350.1282383169280.07384365441390.0723553060408392613.2833
Rheumatoid arthritisChina127980.1948224310890.1780969076790.143359516914699623.3301
Liver cirrhosisChina1201140.3141943699880.2781158817010.1758790845721887963.4183
Type II diabetesDenmark752770.1928744171170.1722821577610.3695978762481751857.4229
Type II diabetesSweden53920.1029115192830.1034856478080.4109238428921329345.0152
Ulcerative colitisSpain78660.1644392042510.1754842780730.5367661326862001666.0289
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382